RNA id: XM_039817851.1


Basic Information

Item Value
RNA id XM_039817851.1
length 5222
RNA type mRNA
GC content 0.51
exon number 38
gene id rnf17
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 26314786 ~ 26373904 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGTAGTGACGTGCAACCGACCGCACCACCTGTTCTGACCTGGTTGTGAGCGAGACCTTTGCATTGACTGTATGGGCATGCTCAGAGCCATCACTCAGGGCATGCTGTATGGGTGTAAGACGCAAAAGAAGACGAAATTATGGACAGAGGCGATAACCCCAGCGCTGTCACTTGCACGTTGTGTGGCGAGGCATATACTCTGCCAGaggATGAAGTTGACGGCAACCTACCTCGTGCGCTTTTATGTGCCCACATCTACTGCACATCTTGCCTGCTGTCCATTCAATGTGACGGTGTCATTAGATGTCCAGAGTGTGAGGTTGAGTCAAACCTTCCTGAAGGTGGGGTGTTTGGCCTGCAGGAAGATAGCAGAATCATTGGCCTCATCTACACTTCTAAAATGAACAAGATGAAAAGGTGTGAGATGTCGAAGAATCGCAAAAGGAACAAAGTATCACCGTCCAAAGACATTAACACCAATACCAAGCATGTGGAGCAGCCAGCTGATATTAAGGACGTTGAGAAGGCGGTGGATGAGGCGTTGGTCCGAGCTGCAGAAAATCATGCCCTTCTGGACCACATCCATGAGTCTCTGACGACTGGTCTGGCAGAAcaggtgaagagagagagagctcggCTGGAGATTGAGATCAAGCAAGCTGCAGACAAGGCTTTACATGCTATTCAAAATTGGAGGGATGTGCAGTTGATTCAGCTGCCAAAACTGGAGGAACAATTCTCCACCAGCAAAGCAGAGGTGTGCTGTGTCCAGGAGAGGATAAAGGCCCTGGACATTGCCATGCAAATGGCCAGAGAAGTACGCCGTGTCCCCTTCCTGGAGCAGTACTGTACTCTGGATAAGGTCCTGGAGACGTTGCGTGCTCCTGTGGATATCCAGTCCTACGATATGAAATGCAATACTATGGATTCTGGAATGAGCTGTGTTTTCCTGTCAGAAGGTGGGAACCAGAGTCTGTCATTGTCTCTGAAGATGGAAGTCAGCAACCCAAAGAACTTGTCCGAGTCTCCACCCACAGACGTCCAGCATGGCAACTCCAACAGAAAGCCCCCCTGGCAAAGTGCAAAGGGCAGTAACAGAAACTGTATCTTACCTAGTCGCAACAAGTTCCCCACCCCACAAAACCAGGACCAGGAGAGCCCGGGAGCTAACTGTGTGTCATCGCGAGGCTCCTCTCCTAGCCCTACACTTCGTCGCAGGCCCAACCTTTCTCGCCACAACTCGGCCTCAGATCATGAAACTCCAGATGTTATTGTTGAGGAGCTTCTCATCGAGAGACAAGAGAACGCTCTCCCACCCACCGGCCCTGAGCTGGCTAATGACAAATGGAGAAGCCACAAGAGAAGGAAAAATCTGATGTTGGGCCATAAGAGAAATGGCACCCAGTGGGTGGTTGTTACCCACATTGTGAATCCAAATCACTTCTACGTCCGCTACATGGCCGAGAAGAGGGACAGCGAGATCCTATCTAAGAATATCCAATACTTCTGCAACAAACGCAGTTCTTACTTCACTTCTAGTCACATGGTGGAGACCGGCTCCATAATCTTTGCAAAGTGTAACAAGGATCACTGGTGCCGGGCCAGTGTGGCTGAAGTTTTGAGGAAAGGATGTGTGGAGGCTGTGAAAGCCTGCCCAGCCACCCAGCTGGCCAGTATCCGAGTCTTCTTCCTTGACTATGGCTTCTGCAAAATCCTCACCAtacagagTGAGGAGGGAAACTGTGAGGAGTCTTCACTGAATGCTGTGAATAACTGCCTGAGGAAGGTGGATGAATCGGTGAATGTAGAGCTGCAAAACTTTGTTCCTCAGGCCATCAGATGTTCACTCAAGGACCTGATCCCCTATGACCTGacaAAGGGCTGGAGTAAAGAGGCGCAGGTTGAATTCCAAAGTGTGGTTGGCTCTGCAGCAGTGGAGATGCGGCCTTTGGGTCAGGACAGAGACTCTTTATTGGTGGACCTAAGGAAAGCTCCCATGGACCAATCAAGTGATGTGCCCATCTCTGTCAGAGAGTTCCTTGTTTTCATTGAAGTGGCCAGGTTTTATTCTCCAGTGAAGTTGGGCAGGAGGCCCCTGCTGTACTACCCTCGTGACTATCCCAAATTCAACACGGAGCTCAATGCTGTGGTGTCCCATATCAACAACCCCTCTGACTTCTACATCCAGCTGGTTGATAATATGGAGTCTATGTTGCTCTCAAACAAGCTCCAAGAGTGTTACAATGCGACAAGCATGGCTGGAGAAGATGACCTCAACATCTACTGCCCTGTGATCGAACAGGCCTGTGTTGCCCGTTATGACGACAAGTTGTGGTACAGAGCTCAGGTCGTAGgtcATCCAGGGGGCAGAAAAGTGGAGGTGCAGTATGTTGACTTTGGCAATAAAGATATCTTGTCAGTCAGTGACTTAAGGAAGATCAAGGATGAGTTCTTTGCCCTTCCTTCCATGGCAATCCACTGCTCTTTGTCAGATGTGATTCCTTTGGATGGCAAGACTTGGAGTGATGCTTGCTGCAACCGATTCGTCAGCCTGGCTCACCAGAAACCGGTCACTGTTGTGGCTACAGGAACAGTCCCCAAGACTGAGCCTCTGCCAGTCAAACTGTTTGAAAGCGGCCTAAATGGGCCATTGGCCAACATAGCTGGGCTGTTGGTTAAAGAGGAGCTGGCTTCCTTCAAAGAGGGACGTGAGCCCAAGGACGCCAGTTTACCTGGTGATGAGTCTGCCATATGGGACCCTCCACTTGAGCTTGGCAACACATGTGGCGTTGATGCCTCGGACCAAACAAACCCTGGAAAGCAGAATGAGGAACTGCTGGAGGTTCAGTGTCAGCTGAAGCTCCCTGATCAACTCAAAGACCTAAAAGTCACAGTCAGCCACGTCAACTCACCGAGCAGCTTCTACGTCCAGCTCAGCCAGTACAACTCTCAGCTCAAAAGGATGTGTGAGCTGGTGAAGGACGCATGTGCACATATGGAGCCCCAAGATGTGGTGTGGAAATCAGACATGTCCTGTGCTGCTCACATTAACGGGGTTTGGGAGAGAGGACAGATCTGCTCTGATGTCACATCCAGCAACATTGCAGAGGTGATGCGCTGTGATCATGGCAACACGGTGAAGCTCGACGTCAGCTGCCTGCGTCCCCTGCCGTTGTCCTTGATGGGTTCTCTGGCTTTGGAGTGCACTCTCACTGACAtcagGCCAGCAGGAGGCAGATCCACCTGGACGGCTACAGCCTGCGACATGTTCTCCAACTACCTCACTGGAGCCTCGGCTGTTATGACCATCAAgGAGTTGACAGATGAGCGTCCAGTACCCGTCACACTGTTCTGCCCCAACAGAATGGGAAAGTTGGTCAACATTGCAGACTTTCTGGCCAGCGAAGGCCTTGCCCTCAAGGAAAGAAAACCAAGAGATGCTATAATTCAAAAATCCAAAGAAACTGATCCAAAGTCTGAAGTGAGCGAGACTAAAACTGGTGGCTCTGATGGCGAGAACAAAAACACTCCCCCAACTCCTCTCATTTCTTTACCCTCCCCATCCTCCCTCGTCTCCACTCCTGCTCTACCGAGACCTACCCCCCGCACCATTATGTCTGCTCAGAAGgtGCAGACTCAGTTGTACCAACCCCCAGAGCTTCCATGCCTCAGTCACATCCAGATAACTGTTACTGCCATTGGAGAGGACGGTCTCATTTACACCAGAACACAGAATGCAGAGTATCAGCTGGAGCAGCTTCGGGAGAGGATTCAGCAGAGTATGAAGACATTGCCTAAACAGAAGCCTTACACCTGGAAGTCAGTTCTTGGCTGTTCCGTCATTGGACCTGATATGCTGTGGTATCGAGGACAGCTGCTGGAGGTGCTGGGAGGACATGTTAAGGTACAGTATGTGGACTATGGCCTGGTGGAGAGCATCCCAGTGGTCCATGTGTACCCCAGGCTGCTGTGTGATGACATTCCTCAGCTCTGTATGCCCTGCCAGCTGCACAGCATCAACCCTATTGGTGGGAAGTGGCAGCAGGATGCGGTGGCCTTGCTGAGGGAGATGTTGCTGGGCCGCTCTGTGGACATGCAAGTCATGGAGCTGCCGACTGACCCAAGGGGACCCCTCAAAGTTATGCTCTTCCTGGACAGGCTGAGCCTCAGCAGGATCCTGTGTCACCACGAACATGCCTCCATTGACCGGACTGTCTCGACACagGAACATGCAGAGATGTCTCCTGCCCTCCTCCTGGATGATTGGGACATCAACACTGAGGGTCTAGAGGACCCAGAGGAGCAGATGCTGGGGCCCTTTATCTACCCAAATCTACCACAGGAGGGAGAGCAGTTTCAAGTCAGGGTCAAGCACCTGTTGACCCCCAACGAGCTGTTCCTGTGGCCTTTGGAGGGGGAAGCTGACGTGGAGGTGGATGGAGAGACTCTGGAGGAGGCTCTGGCCAGAATCAATTCAAACCGCCACGGTCTGCAACAACTCACCAACTTCTGTCATGGCAGTCCCTGTTTGGCAGAGTACAGTGATGGGAAGTACTACCGGGCCAAGCTGAGCAAGTTCGCCAGCATTGAGCCCCTCATGCTCCTGGTCCAGCACGTCGACTTTGGCTCTGACGACACTCTGCCCACCAGCAAGCTGCGTCAGATGCCGGCTAAACTCCTAAGGTTTCCATCGCGGGCACTCAAGGTCAAGGTCGCTGGCTTCAAGTCTCCGAGTGTGAACAAAGATGGAGACGTGCTGCCCTACAGCCCCGGCTGGAGCGTGAAGGCGGCAATGGAGATGATCGACATGTTACACGGCCACATTACAGCCTCTGTTGTGACCCAGGACCCAGAGCTCACCGTGCTGCTGTACAACGAGAAGGAAGAGTTGGTCCATCTGCCTCTGGTGAGCAGCGGACTGGCTGAGTTTGAGTGAAGCGGAGTGGAGACCATCTCCTCAACCCACAGGGTTTACTCACGGATATCCTGTTTTGGTATCTTGATTTCACTCTGTTGTGCTATTTGACTgccatttttagtttttacatgTTGCCGTAGTCTTTACATTCAGTAATCCTACAGGGCAgtgatttattttaagtttgGCTGTTGTGTTCAAGTGAGCTGTGTTGACTTTGCACtttgttttctatttatttGACTCAAGTTAGACAGACTTGCCTGTGTGAAGGTGAAGATTAAAGTCTTCCAATGCTGTCCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171175 lncRNA upstream 21997 26292443 ~ 26292789 (+) True G127204
TU171174 lncRNA upstream 46685 26267885 ~ 26268101 (+) True G127203
TU171040 lncRNA upstream 216245 26098273 ~ 26098541 (+) True G127095
XR_005641034.1 lncRNA upstream 230281 26081889 ~ 26084505 (+) True LOC120570231
TU170998 lncRNA upstream 488496 25825272 ~ 25826290 (+) True G127054
TU171246 lncRNA downstream 67492 26441396 ~ 26442298 (+) True G127264
TU171247 lncRNA downstream 103302 26477206 ~ 26483232 (+) False zmym2
TU171249 lncRNA downstream 103302 26477206 ~ 26484049 (+) False zmym2
TU171264 lncRNA downstream 129655 26503559 ~ 26505543 (+) True G127273
TU171257 lncRNA downstream 136271 26510175 ~ 26518288 (+) True G127270
XM_039817791.1 mRNA upstream 187675 26099440 ~ 26127111 (+) False LOC120569747
XM_039817793.1 mRNA upstream 187675 26099440 ~ 26127111 (+) False LOC120569747
XM_039817792.1 mRNA upstream 187675 26109739 ~ 26127111 (+) True LOC120569747
XM_039819168.1 mRNA upstream 218789 26086729 ~ 26095997 (+) True LOC120570670
XM_039817101.1 mRNA upstream 240447 26027829 ~ 26074339 (+) False il1rl1
XM_039817854.1 mRNA downstream 22166 26396070 ~ 26410761 (+) True ttf2
XM_039818320.1 mRNA downstream 37573 26411477 ~ 26439285 (+) True mphosph8
XM_039818026.1 mRNA downstream 75539 26449443 ~ 26484088 (+) True zmym2
XM_039818027.1 mRNA downstream 76505 26450409 ~ 26484088 (+) False zmym2
XM_039819109.1 mRNA downstream 162049 26535953 ~ 26560881 (+) True ift88
TU171128 other upstream 184907 26116988 ~ 26129879 (+) True G127165
TU170822 other upstream 656060 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other upstream 656060 25639806 ~ 25658726 (+) False cacnb4a
XR_005641105.1 other upstream 1447347 24867321 ~ 24867439 (+) True LOC120570682
TU169945 other upstream 3499684 22807193 ~ 22815102 (+) True G126363
TU171231 other downstream 37607 26411511 ~ 26417667 (+) False mphosph8
XR_005641067.1 other downstream 2014746 28388650 ~ 28409839 (+) True prkag3b
TU171918 other downstream 2654998 29028902 ~ 29041224 (+) True G127814
TU172007 other downstream 2922580 29296484 ~ 29299361 (+) True LOC120569952
TU172063 other downstream 3085240 29459144 ~ 29459978 (+) True G127932

Expression Profile