RNA id: XM_039817855.1


Basic Information

Item Value
RNA id XM_039817855.1
length 2933
RNA type mRNA
GC content 0.49
exon number 18
gene id slc25a12
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17304771 ~ 17324588 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGAGCAGACAGGAAACGCTATAACACACATCTGATGACCAAGTCTCTGTCCGGAGCCTGTGTCTCGGCAGCTCCTCGTTCGAAACACCGCCCTGACAGAAAAGGACAATACTTGGCTAAATATATATTTGGTGTCTCAGACCTCGGCAGTCCTGTCATGCTCGCTGTCATCCTCCTGCCCAGCGCCTGCGCTAGTCCGCGGCAGCTGACGTCACACCCAGCATGGCGGTCAAGGTGCAAGCAACAAAAAGAGCCGACCCCCATGACTTGAAGACTATTTTTCTGAAGTATGCCAGAGTGGTGGAGGATGGAGAGCATTACATGACCCCTAGCGACTTTGTACAGAGTTACCTGGGTCTGCATGCACAGCCTCAGCATAATCCCAAAACTGTGGAGCTGATAGCTGGAGTGGCTGACACGACTAAAGATGGACTGATCTCTTTCCAGGAGTTTCAGGCCTTTGAGTCAGTCCTATGTGCCCCGGACGCCCTGTTCATAGTAGCCTTTCAGTTGTTTGACAAGACTGGCACAGGGAACATCTCATTTGAGAATGTACGTGACATCTTCAGCCAGACCACAGTTCATCACCACATTCCCTTCAACTGGGACTGTGAGTTCATCAGGCTACACTTCGGCCATGAAAGAAACAAGAACCTCAGCTACACAGAGTTCACCCAGTTTCTGCAGGAGCTGCAGTTGGAGCATGCCCGCCAGGCATTTGCACAAAAAGACAAGAAGAAAATTGGCACCATCACTGCCTTGGACTTCAgcgacatcatggccaccattCGACATCACATGCTGACTCCATTTGTAGAGGAGAACCTGGTTTCAGCTGCAGGAGGCAGCACCTCCCACATGGTGAGCTtctcctacttcaatgcctTCAACTCCCTCCTCAACAACATGGAGCTGGTCCGCAAGATTTACAGCACCCTCGCCGGCACTCACAAAGACACACTTGTGACCAAAGAGGAGTTTGTTCATGTTGCAAATAAGTTTGGTCAAATCACTCCGATGGAGATTGACATCCTGTACCAGCTCGTTGGTCTCCACTCTCACTCCGGGCGGCTGAACCATGCAGACATCGAGAGGATAGCCCCGTTGGAGGAAGGAGCCATGCCATACCACCTAGCAGAGGTCCAGAGACAGCATGCTCACGAAACGTCTCGGCCCATCTGGCTCCAGGCTGCAGAGTCTGGCTACAGGTTTTCTCTGGGCTCAATCGCTGGAGCGACCGGTGCCACGGCTGTGTACCCCATCGACCTGGTGAAGACGCGCATGCAGAACCAACGCTCCACAGGCTCCTTTGTAGGAGAACTGATGTACAAGAACAGCTTCGACTGTGCGAAGAAAGTGCTCCGTTATGAGGGCTTCTTCGGATTCTACAGAGGTCTGCTCCCGCAGCTCATCGGCGTTGCCCCGGAGAAAGCTATCAAACTCACGaTGAATGATTTTATCAGAGACAAGTTCACCACACAAGATAATACCATCCCTCTGCCTGCAGAGATTCTCGCTGGTGGATGTGCTGGAGCTTCCCAGGTGATTTTCACCAATCCTCTGGAGATTGTTAAGATCCGTCTGCAGGTGGCTGGAGAGATCACCACAGGCCCCAGGGTCAAAGCCCTGAGTGTTGTGAGAGACCTGGGTTTCTTTGGCCTCTACAAGgGAGCCAAAGCATGCTTCCTGCGTGACATCCCCTTCTCCGCCATCTACTTTCCTGTTTATGCCCACACCAAGGAGAAATTGGCAGACGAGGACGGAAGGCTTGGGGCACTACAGCTGCTCACTGCTGGAGCTATTGCAGGTGTACCAGCGGCTTCGCTGGTGACCCCTGCTGATGTCATCAAGACCAGGCTCCAGGTAGCGGCCAGAGCAGGCCAGACGACATACAACGGAGTCATTGACTGCTTCAGGAAGATCCTCATGGAGGAAGGTTTCAGGGCGTTTTGGAAGGGTGCAGGAGCTCGCGTCTTCAGATCTTCACCACAGTTTGGTGTAACCCTGGTGACATATGAACTGTTACAGAGATGGTTCTACTTGGACTTCGGAGGACATCGCCCTGCCGGCTCTGAGCCTACTCCGAAACCCCTGATGGACCTTCCCTCTGTGACGGCAGACCACGTAGGCGGCTACCATCTGGCTGCTGCAACCTTTGCTGGCGTGGAGAGAAAGTTTGGTCTGCACCTGCCCAAGTTCAAGCCTTCTGGAGAGGGGACAATCAAACCAGCGGTGCCCAAAACGGAGCCACAGGCTTCATAAAGCGTCACTCATCGTGCCTGCGAGGGCTGCATGCTCCTCCGGTCATTAGGTTTCCTCCAAAATGGTTTTATTGAGCCACGTTTCAATTAAATACATTTGAGCGGTTGTCTTACTTTGAATGCTGCATGAGTATGgctttattgcattttctttGCATAGCTTGCACAACTTTATTGTACATATTGTACTTCTCCACAGAGGGACATTATGGCATGACGAAGGATTGTAACTGCGTTTTCTGGTGTGCAATAGCTTTGGTGTGCATGTGTCCGTTAAACTTAAGAGACACAAGGATGTACAGATGTTTTCAAAagtgtttattttgaaatcatGACCAGGGACTCggtaaataatttaaatgtatttattgtattttattgaaataaatcattcagacTGTTTGTTTCTACTGTGTGAAAAGTACATTCTCAGTTTTGACACCAAGCTTTGAGATTCTTCAGGAAACAAACAATCTCTGTTCAGATCCTGTCAACATACATTACTGAGCAGTTACAGCATACATGATCATCTTCTTAGGCATTGAGGATATTCCAACTATCTCTAGTCTAACCAGCTGCACTGATTAAGTGAAAACGTGCAGTATTACAATACAGAAAGTAGAAACATTAGTATTTTACAAACAAGTGAATATTTAGGTTATTAAGTCTCAAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K15105 SLC25A12_13, AGC; solute carrier family 25 (mitochondrial aspartate/glutamate transporter), member 12/13

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167700 lncRNA downstream 10131 17291927 ~ 17294640 (-) True G124695
TU167696 lncRNA downstream 14333 17287949 ~ 17290438 (-) True G124693
TU167672 lncRNA downstream 74655 17227899 ~ 17230116 (-) True G124679
TU167579 lncRNA downstream 124673 17176156 ~ 17180098 (-) True G124612
TU167573 lncRNA downstream 177227 17124881 ~ 17127544 (-) True G124606
TU167694 lncRNA upstream 23323 17347911 ~ 17350746 (-) True G124691
XR_005640878.1 lncRNA upstream 412696 17737284 ~ 17822487 (-) False LOC120569506
XR_005640876.1 lncRNA upstream 412696 17737284 ~ 17822487 (-) False LOC120569506
XR_005640877.1 lncRNA upstream 412696 17737284 ~ 17822487 (-) True LOC120569506
TU167930 lncRNA upstream 697821 18022409 ~ 18023477 (-) True G124872
XM_039818212.1 mRNA downstream 26888 17271740 ~ 17277883 (-) True mettl8
XM_039818005.1 mRNA downstream 33729 17250382 ~ 17271042 (-) True tlk1a
XM_039818482.1 mRNA downstream 226646 17074358 ~ 17078125 (-) False mettl5
XM_039818480.1 mRNA downstream 226646 17074374 ~ 17078125 (-) False mettl5
XM_039818481.1 mRNA downstream 226647 17075882 ~ 17078124 (-) True mettl5
XM_039818549.1 mRNA upstream 60175 17384763 ~ 17386999 (-) True dlx2a
XM_039819086.1 mRNA upstream 97279 17421867 ~ 17424329 (-) True nup62l
XM_039819082.1 mRNA upstream 108002 17432590 ~ 17457470 (-) False ppp1r9ala
XM_039819080.1 mRNA upstream 108002 17432590 ~ 17457470 (-) True ppp1r9ala
XM_039819079.1 mRNA upstream 109071 17433659 ~ 17458368 (-) False ppp1r9ala
TU167228 other downstream 924006 16378609 ~ 16380765 (-) False gcgb
TU167157 other downstream 1203178 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 1887499 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 2310982 14984485 ~ 14993789 (-) True G123960
TU166600 other downstream 2514865 14784561 ~ 14789906 (-) False G123886
TU168094 other upstream 788522 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 788922 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other upstream 788984 18113572 ~ 18115089 (-) False LOC120569287
XR_005640956.1 other upstream 832144 18156732 ~ 18163749 (-) False prkra
TU168240 other upstream 1370892 18695480 ~ 18699802 (-) True G125089

Expression Profile