RNA id: XM_039817866.1


Basic Information

Item Value
RNA id XM_039817866.1
length 5549
RNA type mRNA
GC content 0.48
exon number 16
gene id frmpd4
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19042151 ~ 19076783 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATGCAGTCTCCCAAATTCAGAAGAGGTCTTTTCAGTGTGTGTACGCTGccactgaggaaaaaaaaaatcacctgtGCAGGGATTTGTTTTGATCTGAGAGTCTGCATGTTCCCTAGAGGATGCTGGGTTGTTGTGTCATCAGCGTGATTGATCCTTCATAATTGGCACTTTTGGATATCTGTACTGGCAGCCACGTCTCCCAGAGCAGCTCCCTGGAGGAGGTTCGTCTGGACGGGGACAAGTTTGTGCCACAAGCGCCCCGGAAGGTGGAGATGAGACGAGATCCAGTGCTTGGCTTTGGATTTGTGGCAGGCAGTGAAAAACCTGTGGTGGTCCGCTCAGTCACACCAGGGGGTCCATCAGAAGGCAAGTTGATCCCAGGAGACGAGATCATCATGATTAATGATGAGCCAGTCACTTCAGCACCCAGGGAGAGGGTTATTGACCTTGTCAGGTATGACAACACATTAAGGAGTTGCAAGGAGTCCATATTGTTGAGCGTCATTCAGCCGTGCCCATCACCTAAATCGGCATTCATCAGCGCAGCCAAAAAGGCCAAGTTAAAGACTAATCCTGTTAAGGTCCGCTTCGCTGAAGAGGTCATCATCAATGGCCAGGTCCCCGAAACGGTGAAGGACAACTCCCTTCTCTTTATGCCAAATGTTTTGAAGGTGTACCTGGAGAACGGGCAgactaaatcatttaaatttgacAGCAGCACATCCATTAAGGATGTCATTTTGACCCTGCAAGAAAAGCTATCCATTAAGAGCATCGAgcacttctctctgatgctggAACAAAGAGCTGAGGGGTCTGCCAGCAAACTCATGCTCCTGCATGAGCAGGAGATGCTAACTCAGGTGACACAGAGGCCAGGGTCAAACAAGATGAAGTGCTTTTTTCGCATCACTTTTGTCCCAAAGGATCCCGTGGACCTGCTTAGGAGAGACGCAGTAGCATTTGAGTACCTCTATGTTCAGAGCTGTAATGATGTGGTATTGGAGAGATTTGGGTCAGAGCTGAAATACGACACGGCCCTCCATCTGGCTGCCCTGCAAATGTATATTCTAACCATCAATACCAAGCAGTCCCAGAAAGTTTCCCTCAAGTATATTGAGAAGGAGTGGGGTCTGGCGTTGTTCCTGCCTCCTGCAGTGCTGTCCAGCATGAAAGAGAAGAACATCAAAAAAGCCCTCACTCACATCCTCAAAACCAACCAGAACCTGGTGCCCCCTGGTAAAAAGCTGACTGCCTTGCAGGCAAAGGTCCATTATCTGAAGTATCTCAGCGATTTGAGGCTGTATGGAGGACGAGTTTTTAAATCCACACTAATTCAAGGCGAGAAGCACACAGAAGTGACATTGCTGGTGGGGCCCAAATACGGCATCAGCCATGTGATTAATACCAAAACAAACCTGGTGGCACTTCTGGCTGATTTCAGTCATGTCAATCGCATTGAGATGTATACAGAAGATGAGAACAGGGTTAGAGTGGAACTACACGTTCTGGACGTGAAGCCCATCACTCTCTTAATGGAGTCTGTTGATGCAATGAATCTGGCCTGTTTGACTGCTGGCTACTACAGATTACTGGTGGACTCTCGGCGCTCCATCTTCAATGTGgccaaaaacacagaaacaaGCCATGCAGCAAGAGTAAAGCAGACCTACCAGGCCATTGAGTGTACATACAGCACACCCCATAAAGGATTTGAAGAAAGAAACCAGAGATGCAACCAAGATTATTCTGACCAGGAGTCTGAATACCTCCAGCATGGGAGATTTGAAGGCCAGCGAGTCTACATTACTGAGATCCACCAACCCCAACACTCAATGCACATGGCAGAGAGGGCAGAGTGCTGCAGAATCCCTTGCTCCCAAACTTACCTCAACGTCCCCAGGCCCAAACCCCAAGACTCCTCCAGGAGTGCAAAGGTCTCCTTCATATTTGGAGATCCTCCCTTAGACAGTGTAAACCCCCAAAATCTGGGCTACCAGAGACTGATGGATGAGAGCCCAGAGATGTTAGACAATCACAGCCACATGTATAGGCGTCTCGAGGACGACTATAAGATGATGGATGCCATAGAAGACGGGGACGGGTATCAGTACTCCACCAAAATCTTTGGTCCTACTGAATGCATCGAGGAGCCGCTGCTGCACGATATCTGCTACGCAGACACAACAGATGACGcagaggatgaagatgacatCAGCTGTGAGGAGGACATGGTGATGAGTGACATTGACAAGCCTATGTTACTTTCACTCTCAGGGTCCAGCGATGACATCATTGACCtaacctccctccctcccccaccgGACGGTAATGACGAGGAGGACAATGACGTACTGCTTCACTCTCTTAACCTGGCCATCGCTGCTCCTCCTCCCGGCTTCAGGGACAGCTCTgacgaggaggagcagcagcagggggccgGCACTCGGGCCCAGGGGGCCTGCAATGATATCCCAGTGTCTCTTATAGATTCAGTGCCCGCCCTCGGAGCAGAAGGCCACGGCGAGCCTCTGAACGATGCAGTGGTGTCCACCTTACAGGCACTCGAGGCCCTCGCTGCGTCTGAGGAACAGAGTCCGGCACAGTCCGAGAGTAGCACAGGTGTAGAAATATCACGAGCATTTAGTCCTGAGTCCTCAGATTCTGGCAACGAGACAAATTCCTCTGAGATGACAGAGAGCTCCGAGCTGGCCGCTGCTCAAAGACACTCAGAGAACCACCTGAGGATGCAAGGTTACCACGCTGTGAACGAGGAAAAGACGGAGGTCGCTGCACCTAGCGATGGTGGTGCGGGAGCTATGCAGTACAACACCCAGGAGCATCAGGATGAGGAGGCTAAATCATCTGCCGTTGCCTCCTCCCAGATTTTTCACTCCGATGGCGGTGAGATGGAGCCAGAGACAATGGAAATAAAATCAGTCAGTGAATACTTCACTAAGATGCACATGGGCTCAGTAATGAGCAGGCAGAGAGGAAAACAGAGGGTGGCAGAGAGCAGAATGCAAGGAGTTACCTGTGAATCCTCTGACAGATCTCACACGACTTCTCACGACTCAGCTAGAGAGGAGGCCCCTCATCTTGTTGGGAAGTATAACGCTTTCACTGTGAGAGATTCCTACTACATGAATCAACTTGATCTGGGGCGAACTCATTTTAAAGACAGGCATCAAAAATGGCAGCAGAGAGTGCCCGAAAACAAAATGGCAGAAAATCTCTCTCCAGATGGTGTGACTGACTCACAGGCTTTCCACACAGACAGGTTGACAGTAAAGGAAGAGAAACAGGACTCAGATGATAGAAGCCAACAGTTAAATGCTCACTCTCCGTCCAAAGGGCCTGCCCTTGCAGAAGGAGATGCCACTTCACAGGACAATGAGCAGCAGAAAATTAAGATTCCACCATTGGATCATGACGTCACACGGTTATATGAATACCACGTGAGCAAGCGCATGTCATCGATACAGAGTGAAGGCGTTAATTCTCTTCAGAGCTCGCAGTGTTCCTCTATAGACGCCGGTTGTAGCacaggcagcagcagctgtgtCACCCCCATGGATTCTCCTCTTTGTGCCACAGACAACATGCATGTACTGTCAGAGTCCTCGCTCAAGGGGCTGAGTTATGTTACTGCTGAGGAAAAACATTATGGGCCCCCAGGTCAGGGGAGGGTTAGCCATCCCATAGACCCCACCCTGCTGAGGAAGATCCACGCAGCTACCAGTGCTGAGCCTGGGTTCGGGATTACACGAGATACCAGTCACCGTAAGCCCAAGATAAAAGAAACCACAGCTTGCACACAGCTGAAGAAGGTTGGGGAAGAGTCATCTTTAGCTCTCTGTAATGAGACCAGTACCACCACCACAACCACGTCACCATCATCATTAAGAAGTAGCACAGAGCGCAGAGGGCTAACACAGGCCAGCCCCGAGCCCGACCCACACACCCTGGCTTTCCCCTCAAGCGGATCTTTATGTGACCCTAAAACAAGCAGCATCAGGAAGCCACGCAGGGATCGGATGctcaggagaagctggagcacCATAATGCCAAGTTCCAGGAGTTTAGAAGCGCTGATAGAGAAGACCAGAGCCACACTTACAAGAAGGAGTGGTGGTCCGAATTTCCCATCTCAAGATCCCCCTAAAGTACAGAGGATATTCTCTGCCAAAACCTTGCCCAAGAGCTTGTCCCAGGGTTCAGTCGCAACTAATTCGTCTGGTAGAAGGCTACTAAGAGGAGCCGCCCTGTTGCTGCCAGAGTCAACAGCACCAAGGCTGGATGTAGGTACGTGGAGGTGCCATGGGCCATTCAGTCACTGCTTCCTGcggagaaagaaaaacactgatggtgatgatgaagaCAGAGAGATGCACTCACATGCTCTGTTTTCTGTCAGCTCGGTTTTGAAAGCTGACTGTAAAGCTGAGCAGAGTAACATAAATGCAGCTACGAATGACATGAGCCTCGAAGCACGGCTAGCTCGTGTAAATTCAATGAAGGGAAAAACCTACAGCCTTCATACAGGGTTCGCACTTACACGTAAGGATGCCTTAGAGATGGCCGGCGTGTTGCGTTCCAGCGTCGGCAACTGGTCCAGAGGTGCGAGACGAGAGGTCAACGAGGCTGACATGGATAACTTCTCTCAGCTGCTTTTCATGCAGGCGAAAGTGCTGAGCAGCGCCTGCACCCAGATGGGTGTAGAGTACAGCAGCCCAGAGGAGTTACTGCTCACTCTGACACACAGCTTCCACACACTCTGCTGCCTAACGCAGGCCTGCATGTCACTGGTGGAAGGCCTGAGCAGCGAAAGAGAGCGGCGCGAGGTGGTAGCCAAGGTGGACAAGGTCGTCATGAGCTACGTGTGTTTGCTGAAAGCTGCTGAAGCAGCTTCAGGAAGATCCCCCAGTGACCAAAGTGTGAATGCATTGACACATCACTCTGCCTCCATGCCTGCTATTATAAATGCACTAACTCACTCACTGAAAACACTGCTCAACAAATAAACTGTTGTTATTTTGTCCTGATTATTGATTTTAAAGCCATACATAAGAGACATGGGTTGTAACAACCAATGTGaactgctgtgaaaaaaaaacttgccttgtgtatacaatattttattatgtaaagtaaaaaatacaacTAGAATTATTAAAGTTTTGAATAGATTATATTAAGGCCTCTATGAAGAAGAATATGACCCTCCTCTCAAGTATATTATCTAATATTATATAATAGGGATTATTTTCAAGATTTATTGGTTATATTAGGGGTTCAACATTTAGATTATTACAACCTTATTGGTATCTTGTTTATACATTGTAAGAATATATATTATGTTGGAGAAATGCATACACACAGCTCTAGACAAATCACTGCACAGGACAAGACGTGATCAATCAAGTAACACATTACTTTTTCATTGGCTGGATTCACCTTTATTTAATGAATACTTTACACATGAACACTGAGTACTTTCCTGTTATATTTTGTGAACATCAttaaaaagattaaaacttGTAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168280 lncRNA upstream 201429 18852566 ~ 18855030 (+) True G125115
TU168279 lncRNA upstream 204664 18845407 ~ 18851795 (+) True G125114
TU168275 lncRNA upstream 226551 18829619 ~ 18829908 (+) True G125110
TU168274 lncRNA upstream 226933 18828933 ~ 18829526 (+) True G125109
TU168269 lncRNA upstream 227546 18828686 ~ 18828913 (+) True G125104
TU168369 lncRNA downstream 12667 19089450 ~ 19090785 (+) False tmsb4x
TU168492 lncRNA downstream 379314 19456097 ~ 19459225 (+) False igsf3
TU168499 lncRNA downstream 390649 19467432 ~ 19468790 (+) True G125266
TU168502 lncRNA downstream 414755 19491538 ~ 19586655 (+) True G125267
TU168513 lncRNA downstream 474575 19551358 ~ 19551941 (+) True G125274
XM_039818438.1 mRNA upstream 94285 18956693 ~ 18962174 (+) False LOC120570209
XM_039817867.1 mRNA downstream 406 19077189 ~ 19082770 (+) True tlr7
XM_039817868.1 mRNA downstream 5350 19082133 ~ 19088916 (+) True LOC120569791
XM_039817869.1 mRNA downstream 12635 19089418 ~ 19090763 (+) True tmsb4x
XM_039817370.1 mRNA downstream 27403 19104186 ~ 19112692 (+) True egfl6
XM_039817371.1 mRNA downstream 27403 19104186 ~ 19112692 (+) False egfl6
TU168229 other upstream 351931 18703028 ~ 18704528 (+) True G125079
XR_005640963.1 other upstream 1039046 18010757 ~ 18017413 (+) False hnrnpa3
XR_005640989.1 other upstream 1175733 17860160 ~ 17880726 (+) False hoxd10a
XR_005640959.1 other downstream 1098045 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other downstream 1098045 20174828 ~ 20265148 (+) False myo16
TU168970 other downstream 1415395 20492178 ~ 20521274 (+) False G125627
TU169140 other downstream 1776306 20853089 ~ 20858910 (+) True mpc2b
TU169142 other downstream 1783369 20860152 ~ 20865442 (+) True G125757

Expression Profile