RNA id: TCONS_00006710


Basic Information

Item Value
RNA id TCONS_00006710
length 2711
RNA type mRNA
GC content 0.42
exon number 12
gene id XLOC_003434
representative True

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 23993298 ~ 24000171 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCCCTTATCAGCTGTACTTTGGAACTATTAATAATGTATAAGTATACATGATCGAGAAGGGGCTTTCACCAAACTGGCCATTCTCAGTGCAGCTGACACAGCTCACTTTATTTCTCAAGCATACTGGTTTGGATCAGGATCAAAATGACTAAGTTGACTATATTAGCAGGACTGGGCATCTTGCTGTCATTACAGATTGTGTCCTCCACAAAACTGGTGTGCTACATGACCAACTGGTCCCAGTACAGACCTGGAAATGGGAAGTTCTTGCCAGAAAACATCGACCCATTCCTCTGCACTCATGTGGTTTACGCTCTGGCAACCATCAGCTATGATAATCAGATCACCACCATTGAATGGAATGATGTCGATCTGTACAAGTCAATGAACGAGCTCAAGAAAGTaaATCCTGCACTGAAGACACAGCTGTCGGTTGGAGGATTGGTCAATGGTGTCAGTCCATACATTAACATGGTGGCGACTCCAGAAAACCGCAAAGCTTTCATCCGCAATGCATTATTGTTCCTGCGGCTCCATGAGTTTGACGGCATGGACATTGACTGGCAGTATCCTGGTCATAATGGAAGTCCACCACAGGACAAGCAGAGGCTGACTACATTCATCAAGGAAATGAGAGATGCAATTGAACAAGAGGCCATCGACACAAAGAAAACTCCTCTGCTTCTCTCCATCAAAGTGTCCGCCATCAAAACCACTATCGAAAATGCTTACGAGGCCAAAGAGGTTGCAAGtttggtGGACTTTGTGACCATCATGTCTTATGACTATCATGGCCACTGGGACCCCATAACAGGACACAACAGCCCTCTTTTCCGTAGCTCCTTTGACACCGGAAGCATTGTTCACCACAATATCAATTCATCTTTGGAATTCTGGCTTGGCAGTGGAGCTCCTGCTGACAGGCTGCTGCTGGGTTTACCTACATATGGACGCACATTCATGCTCTCTACTTCACAAACTGGTCTCGGGGCTCCAGCCAATGGTCCCGCTGATGCCGGCCCCTACACACGCGAAGCAGGCTTCTGGTCCTATTATGAGATTTGCCCCATGGAATCAAGCGTCCCCATTCATTGGATTGATGAACAGATGGTGCCCTATGCAGTTCAAGGACGAGCTTGGGTTGGATTTGACAACCAAGAAAGCATTACCGCTAAGGTGCAGTGGCTTAACTCCTTAAAACTGGGCGGAGCCTCAGTGTGGACCTTAGATTTTGACGATTTTGCTGGCCGCTTCTGTTACAACGGAGCTTACCCTCTTGTCAACCATCTGCGCAACTCACTGGGTTTCCCACCCAAGCCCACCACTACACCACGTCCCACCACGACCGCTGACCCCATCAACTCTTTCTGTGTGGGTAAACCAGACGGCCTGTACCCACACCCTACTGATGCCAGCAAATACTTCCACTGTTTCCGTGGAAACACATACCTGCAGCAATGCCAACCTGGTCTGGTCTTTGTTGACGCTTGTAAATGTTGTGATTGGCCTTGAATGTAAGTCAATACAGCAGTCCAGACTTCAACTATGATGTATCACCTTGTCTTCCATCTATCCAAGCTCATCATCTGAAAGaaacacaataataatgataataaaagtgACTAATTTTTATGCATAGCAGTATGGAGTTCTTTGTAAAGTACTGGTTATATATTCACTCTCATCTAGTTTTCCTCTTGTTGTGCAGCAAAACTATgtcctctttttttctttcactttaaataaagatatttatgACAATCTGACTTAAAGTGGTCatctgtaaataatatataaaaagaaaaaaaggcttATATATATGAACAGATTCATGAACATTTCActcataattaattttttaagacAGGATAGattgattcccagagatgggttgcggctgaaagggcatccgctgcgtaaaaacttgctggataagttggcggttcattccgctgtggcgacggcggattaataaagggactaagccgacaggaaaatgaatgaatgaaaggatagATTGAAGGGGATAAAAGGCGTTTTACGTCACTCAacaatgatgtttgctgtttgttataactattttaaaatgagctttaacaacacaattcttgagttttagCAGTGAATCCACCTAACCTATCCACTTGAATGAGTAAAAACTAAGCTaatttaattcctttatgttgtccgaatacggaagccagcattttttacagtgatgtTTACCGTGCACCCATCAAGCCACATATTAAGGGGTTTCTATGAAAATCAGCTTGATTTATGAGAACAGATTAATGAGCATTTGCTATGTGAACTGCAGGGGTATCATTTACAGTAAACTGTGTCCtactctgattaataaagtcatattGTTCCCTCTGACATAATAACTGTATGCTAGACAAATTGGCTTGAAAAGGACAGTTATAAAATTACCCTGGCCACGTCATAAAATACAGACTGTTCTGATAATGTTACACAAGCACAAGGACCTAGATTTCTTTATTCTTATATTACAGTCGAGCTAATAAACTATCTGAAGAAATCTGGGACACTTTGTTTTGGCTAGATTAGATAGATTTGTTTAAACTGTAAATGTGCACGTTCGCACATGaattagtatttatatatattatatatcagtAAATACTCATTCAGCTAAGGTATAGAAGAGTTACTAaggaataaacattttatttttaaaaggatgC

Function

GO:

id name namespace
GO:0006032 chitin catabolic process biological_process
GO:0005975 carbohydrate metabolic process biological_process
GO:0005576 extracellular region cellular_component
GO:0004568 chitinase activity molecular_function
GO:0008061 chitin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-040426-1994 Predicted to enable chitin binding activity and chitinase activity. Predicted to be involved in chitin catabolic process. Predicted to act upstream of or within carbohydrate metabolic process. Predicted to be active in extracellular region. Is expressed in intestinal bulb. Orthologous to human CHIT1 (chitinase 1).

Ensembl:

ensembl_id ENSDART00000172459

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006707 lncRNA upstream 79799 23895540 ~ 23913499 (+) True XLOC_003432
TCONS_00008604 lncRNA upstream 90608 23895529 ~ 23902690 (+) False XLOC_003432
TCONS_00008603 lncRNA upstream 395627 23594349 ~ 23597671 (+) False XLOC_003430
TCONS_00008602 lncRNA upstream 395627 23594349 ~ 23597671 (+) True XLOC_003430
TCONS_00008601 lncRNA upstream 1066110 22920469 ~ 22927188 (+) True XLOC_003426
TCONS_00008605 lncRNA downstream 15664 24015835 ~ 24022124 (+) False XLOC_003436
TCONS_00006714 lncRNA downstream 18230 24018401 ~ 24024576 (+) True XLOC_003436
TCONS_00006718 lncRNA downstream 35633 24035804 ~ 24039174 (+) False XLOC_003438
TCONS_00006719 lncRNA downstream 38962 24039133 ~ 24040070 (+) True XLOC_003438
TCONS_00006721 lncRNA downstream 60985 24061156 ~ 24083588 (+) False XLOC_003440
TCONS_00006709 mRNA upstream 5616 23957440 ~ 23987682 (+) True XLOC_003433
TCONS_00006708 mRNA upstream 13684 23933016 ~ 23979614 (+) False XLOC_003433
TCONS_00006705 mRNA upstream 111966 23760506 ~ 23881332 (+) False XLOC_003431
TCONS_00006703 mRNA upstream 113651 23760470 ~ 23879647 (+) False XLOC_003431
TCONS_00006712 mRNA downstream 1822 24001993 ~ 24008739 (+) False XLOC_003435
TCONS_00006713 mRNA downstream 2332 24002503 ~ 24007988 (+) True XLOC_003435
TCONS_00006715 mRNA downstream 27544 24027715 ~ 24029711 (+) False XLOC_003437
TCONS_00006716 mRNA downstream 27638 24027809 ~ 24032190 (+) True XLOC_003437
TCONS_00006717 mRNA downstream 34174 24034345 ~ 24044586 (+) False XLOC_003438
TCONS_00006700 other upstream 595913 23397270 ~ 23397385 (+) True XLOC_003428
TCONS_00006698 other upstream 1279167 22714015 ~ 22714131 (+) True XLOC_003425
TCONS_00006686 other upstream 2342660 21650522 ~ 21650638 (+) True XLOC_003418
TCONS_00006677 other upstream 2940954 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006668 other upstream 3960113 20033066 ~ 20033185 (+) True XLOC_003402
TCONS_00006723 other downstream 178652 24178823 ~ 24178938 (+) True XLOC_003444
TCONS_00006731 other downstream 339191 24339362 ~ 24345423 (+) False XLOC_003446
TCONS_00006732 other downstream 339203 24339374 ~ 24345421 (+) False XLOC_003446
TCONS_00006735 other downstream 339214 24339385 ~ 24342063 (+) False XLOC_003446
TCONS_00006738 other downstream 339225 24339396 ~ 24340731 (+) False XLOC_003446

Expression Profile

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