RNA id: XM_039817870.1


Basic Information

Item Value
RNA id XM_039817870.1
length 5949
RNA type mRNA
GC content 0.47
exon number 10
gene id si:dkey-67c22.2
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 14943125 ~ 14956778 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGCATTGCATTTTGGGATACCTTCCTCCATCATGGCGGATTAGGTAGTCGGCTAACATTAACGATTAGCATATTCAACGATTGTTTGGTTTCCCACATTGAAGGGGTGCAGCTATCTGGCATTTTCTACACAGGGACTGCATCCACCGAACATAAACTGGTGTTGAGTGACGGTGCAGCACGCCAGTGTCATTAAGAGGGCATTTTACAAAATCAGGGACAACCGCACAATGGAATGTGCATTGGACATCCCCTCAGGTGATGACGAGGCACCTGAGAAAGATGAAATGAATGCCAAAGAAGGGAATGAGCCACCCCACAAGAAAAACAAGaagcacagaaaacacaagagcaagaagaagaagaggaagaagaagggggAAAAGGAAAGCAGTTCAGAATCCGGTGCTGAGTCAGATGCAGAGCCTCCGCCGCCGCCGAGGGCTGTCAGGACCACCAGAGCCAGTGCCAGACTGGCAGCAGCTACAGGAGCTGGAGACCCAGCTGGGCTAAAGGAGGAGTGCAGAAGGGATGTAATTACAGATCGTGCAGACACGGAGGGAGATGCAAAatccaaaaaacacaaaagacacgctgccaagaagaagaagaagaagaggaagaaagaagaaaagcagGAGAAGAAATCCCCATCTCGCTCCCCATCTGAAAGCAGCTCAGCTTCAGGCTCTGAGTCTGAAGGTGAAGTAGGGAAAGGGGCTGCTGATGGCAAATACTCTCCTGCTGCAGCATCTGAACTGCAAGACCCAGTGTCCAAACTGGTTTCAAAAAGCAAACGAGGGGAGAAACCTGAACTGCTTGGAGTGAAGAAAGAGGAGATATCAGATATGGATGTGTCCCCATCTGGAGGGAAGGGCAGTAACACCAATCGATCAGAAAAAGATATGAGGTCCCCCTCTGCAGGCCAGGATGAGATAACACAGACAGTGACAGTTAATGTTAAGACAGAGGGTAGTCATGCTGATGGTACATTCAGCCATGCCCAGGAACTCCCTGACATCATCCCTAAACAGGAAGGTGCTACTGCAAGAGATGACCCAGGCCTGAAAGATCAGGCAAATTCAGTTCAGAGGGCTAAGGACAGGGAGCGCGATTCATCCAGGTCCAGGTCTCCTTCCCCTCCCAGGGGCATAGACATTAAGAGGTCTGGGTCAAGTCATAGTCGTTCCCCAACATCTAGTCCTAGCAGGCAGCACTCTGATGggcaaacagcagcagcaaagaAAGAACGGTCAAGAACCCATTCCAGGTCAACCTCTAAGGGAAAACGGTCTACAACTCCTTTAAAGATTCGACAACTTTCCCGCTCTCTGTCCCGCTCTCTGTCCCCTAAATCTAGAAGGAAGTCTCTCACCCCGTCTCCCAAGAGAGCCATCTGTCAGTCCCGGTCCACCTCTCGCTCCCTCACCCCAAAGAAGAAATCAAAGTCTCCAAGGAAGTCGAAGTCTCCTAAACGTCGGAGGTGTTCATTGTCTGTTTCGCCAAAGCGACGCAGAAGTTCCCGCTCTCCTAAAAGAAAGGTGTCACGATCCCCTAAACGTGGTGGGCGCaggtctccctctctctctcggtctccaAGGAGAAGTCGAAGGTCAGAGTCACGTCCCCGTGGAGGCACAACCCACTCCAGGGCCCGATCACCTAGACGAGGTGGTGCAGTTGGCAGGCGTTCAAGGTCACGTTCCATCACTAGAAACCGTCGCTCCATCTCTAAATCAAGACGCCCTGTTCGTCGCTCCAGGTCGCGGTCACCGGCAAGACGTGCAGGAGGTAGGCGCTCCAGGAGTCGATCTTTGTCTAAACGTAGGAGGTCACCACCCCCCAGATCCCGCCGCTCACGCTCCCGGTCGACCCGCCGGGGCAGGCGAACTCGGTCACGATCGGTTGTAGTCCTCAAGCGCAACCGGCGCTCCAGGTCTAAAAGTCCCCGCAAACGGACCAGATCCAAAACCCCTTCCTCTCGACGGCGCTCCCGTTCCCCCGCCAGGAGAAATCGTTCTCCACCGAGGTCTGGCAAACGCTCCAAATCTCGCTCGTTGTCTCAAAGACATCGGTCAAAGTCACACTCACCACTACCTGTCAAGAGGAAGTCCAAATCTCCTAGGAAGAGTGGAAGAAGGTCAAAGTCTAAATCCGTCTCTGTGGGCTTGAACAGATCCAAGTCCAGGTCTGAGTCAAGTGATGGGCAGTCTGACAACTCCTCCCCAGCCAGATCCACATcttcttctcctgttaaacAGATAAAGTCTTCCTCTCCTGaagcagagcagacagctgcAGAAAGTGGAGGATTTAAAGCTACAGCAGGTGCCTGGAAACCCATGCCCTCATCAGATGCCAGTTCCTCAGATACGTTGCAGGAGCAGCCTCAGACACTTTCTCCCAACCATGACAAGGAACAGAGGGCCAGCTCATCCAATGAACGAGATGTTTCCAGGTCCAGGTCTGGTTCTAGAGAGCCCAGCACTGGCCCAGATGGGTCAGATTGTTCAGCAGGCTCAGATGAAGAAGAGGTGTCTTCCTCCCCAGTTAAAACGGCCTCTAAACACCAGAAAAGCTCAACTTCACCTCGACGATCAACATCCAAGTCTACATCTCGAAGGAAGCAGTCTagGTCCAAGTCTCCTGTGAGGAAAAGAGAATCTGTCTCTCCATCAGAAAGGAAGAAACGACGGTCTAAGTCTCGGAGTCCTGCCTGGCGCCGGAGGTCGCGCTCTGCCGCGCGGCGTAAACGCTCACGCTCCAAGTCACGAACCAGAATCCGCCGGTCCAAGTCCCGCTCTCCAGTCCGAAAAAGACGATCCCGCTCACCCAATGCCCGTGGGAGGAGGAGGTCCAAGTCCATAGACAGAAGCAAGCGATCAAAGAGCCGCTCCACAGGCCGGAGGAAAAGGTCAGGAGACAGAAGTAGGCGATCAAGGTCTCGTTCTTCTGATCGCAGACGCAGGTCTAGGTCAAGGGGCCGAGGGAGGCGCCCGGTGTTTCGCAGTCGTTCGTTTGATAGGCGGGACAGGTGGAAAAGGGAACCCAGCCACTCTCCAGTTCTCATTCTTCGCAAACAGCGACGCTCAGGGTCCCGGACACGACGCAGCACCAGCAAGACTCCTCCACGCCTCACTGACCTGGATAAGGACCAGTTGCTGGAGATAGCCAAAGCTAATGCTGCTGCTATGTGTGCTAAGGCAGGGGTTCCCATTCCTGAGAGTCTTCGGCCGAAAGCCATTCTCCAGCTCCCTCTACCCACTCCATCTCCTACCCCCCTCTCCTTACCTCTACCGTTACCTCTCCCAATGGGCATGGGGATGCCCAACATGCCGAATATGCCCAACATGGGTCAAATGGGGATGTCCAATATTCCAGGAATGCCCAGCATGTCAAACATCACCATGAGTGCTGCTATGGCAAGTATGACAGCAGCTACTATGACAGCTGCCTTGACCAACATGGGTGCCCTGGCAGCCATGCCTCCCCTTGCCCCACTTCCTACCATCACTAACAAACCTCCCCCATGTCTCGTCCCCCCAACGCCAACCCTTAACCTGGACCACATCGAGGAAGCAAAGAGGAAGGTCACACAGCAAGCTAACATTCACACCATCAAGGAGCTTACTGAGAAGTGTAAGATGATTGCAAATAGCAAGGAGGAGATGGCTATTGCTAAACCCCATGTCTCGGACGATGAAAGCTAAAAGCGCCAAGCCCTCACgCCACTCCTCAAAAGACTGaaggaaaatgtaaaaaaaaaaaaacaggagaacCTATCTTCCCACAGTTCCCTTTGGCAGCCAGAAGACCTGACTGAGCCTCATAAACCACCAAGAAGAAGAGCACCCAAGTTGTCACGGTTACAATATAGGCACACCAGCCACTGCCCCACTCAGctcgtgcgtgtgcgtgtgtgagtgagagacacTGAGTGAATTGGACACATTGACATGTGTACAGTTGTATGACTGTATAGTGAGTGTGGGTCTGTGTATGaattgttggtgtgtgtgtgtgtatatatatagttacTTTCACCACCTCAGTGTTGCTGCTCATTTAAGCAGTCACTGACTAAAGAGGAAACAAACCAAACTAACTAGTGGCGCAAGTGTTTTTGTAAAAGATTAGTTTCTCTAAATTGCTTTTACTTTCTTAAAGAACTGTGTTAAGTGGAGACTGCTTCCTTGTTCTGCTGTATTCCCCTCGGTTATCGCCAATTCCTAGTTTTATAAACGGATAATGCAGACAAAGTTTTGGTAGATTCTTACATGTGATTTGTTTTAACAAGCCTGGGTTTTCAGGGCAAATGAGTGACCACATGTGAATCCTGGATCAGGGGGCCAGATCTGATTATTTTGAAGGAATGGAATAACTCAATATATTGGCTGCAAGAAGGAGGTTTGATTTTTGGCTATGACAAAGATTATCATCTTCATTCACAAAACATAACTTTTAGCACTGCCCTGGGTGTGATTTTTGTTCCCTCTACTTTAAACTGCACCGACCTAATCTTTGACTCTACCCTGGTTTTTCATTTGGACTATGTTGGGGGATTTTTTTGGAAACAAGTTTGCTGTATATTTAAATAGACATTTTATCTGCCACACTTTTAACACCAGTATCCTAACATGCAGTGTTATGTGTTTTGCAGATATAATTTAAGATGGATAAAAAGTATACTATTAGTATTCCCTGGGAATTTCCATgattggattaaaaaaaaaaaaaaaaaaagttgagttGAGTGTAAACATTTGAAAGGTCTATGTTTCTATTCGTTATGCAGGTTTAATTTTGAAAGCAATGCTGGTTGATGGCTGTCCCCACATGTCTTGACCTTGCCATCAGAACCTAACCTATCATAATACCCATAATCCCAGATTCATATCGCAGCTGAGATCCTATTGACTGGACCTTGAGCCCCCAATCTTTAGCTGTAGCAATgtaaaatttattttgttttcctgatAACAAACCAGATTGGTGAAAATGTAACTTCCCTTAAACTTCACAATGTAAATGAAGGTAATTATTACTTGTTTAGAATAAAATGTCTAATTCACTGTTAATGAATACATGATGAGCAAtaggcattttcttttttaaatacgcTTTAGATATGCTTTTGCCTTTCTGTTGCTGTttacattattaaaacataatTATTATCAGTGGTTTTTATTGAGGCACACATGGAGAACGTAATTCATGACAAATTACTTATAGTGGTCATAGAGTTGAATGTAGAAAGTTGAGTATGTCCCGAACTGTGCGATTGTTAAGTTTTTTGTATAGACAATCAAGGTTCTTTGTCTCATGATGCTTTTTTGGAGAAAGAACTAGAACCACAATTTATACATATTGCAGCATTGTAATCAGGTGGCAAATAAGAGAATTTTCATGGATAACTGTGCAGACAATGAAAAACCCAGTAAGCCGTTTTCATTTAATCCACTGACTCATTTCATATATGCTGTAAATGTTATCCTTGCCCCTAGTTGGTCTTCTGTGTGAGCTGCGTCTGGGTAAACACGTACATGTTTTACTGAATGCTTTTGTACCCTTGGATAACTGATGAACAAGGCAAACTTGGTGCTTTTGGGAAATTTGGCAGGGGTGAGGTTTTTGAGGAATCTTGCACTCATaactcatttattttcattggaGAGGGAAATAATTCTGGATTCATTCTTTTTTGTCGACCTCCCACACCCAGGGCTGTTTAACTGGAAGATAATCTGTTAGGGTTTCCAACTAACTATACTGTCTGTACCAAAAGCATTGTTGAATTGATTCCCAGAGGTAATCTTTAGCTATTTTAATGATagaaaaaagatgaaaatgcattttaggtttgttttttttgggccaTTTGAATATGACATTGCCTGCTTTGTACATAAATGTGTCGATGATTATTAAAAACCTCAATGatctgta

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03015 mRNA surveillance pathway

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166677 lncRNA downstream 3551 14939331 ~ 14939574 (-) True G123948
TU166611 lncRNA downstream 138793 14803514 ~ 14804332 (-) True G123889
TU166584 lncRNA downstream 212745 14726756 ~ 14730380 (-) True G123878
TU166587 lncRNA downstream 212745 14726756 ~ 14730380 (-) False G123878
TU166578 lncRNA downstream 269744 14673131 ~ 14673381 (-) True G123872
TU166696 lncRNA upstream 28529 14984014 ~ 14984415 (-) True G123959
TU166768 lncRNA upstream 160245 15115730 ~ 15123454 (-) True G124000
TU166770 lncRNA upstream 160709 15116194 ~ 15123945 (-) True G124001
TU166795 lncRNA upstream 222833 15178318 ~ 15196218 (-) True G124014
TU166949 lncRNA upstream 519773 15475258 ~ 15476148 (-) True G124136
XM_039818795.1 mRNA downstream 22476 14905104 ~ 14920649 (-) False LOC120570445
XM_039818796.1 mRNA downstream 24835 14903356 ~ 14918290 (-) True LOC120570445
XM_039818784.1 mRNA downstream 84388 14841299 ~ 14858737 (-) True LOC120570436
XM_039818785.1 mRNA downstream 88809 14841299 ~ 14854316 (-) False LOC120570436
XM_039818969.1 mRNA downstream 204711 14730941 ~ 14738414 (-) True LOC120570577
XM_039818789.1 mRNA upstream 14041 14969526 ~ 14973908 (-) True LOC120570440
XM_039818097.1 mRNA upstream 41004 14996489 ~ 15078401 (-) False dip2a
XM_039818092.1 mRNA upstream 41004 14996489 ~ 15078401 (-) False dip2a
XM_039818091.1 mRNA upstream 41004 14996489 ~ 15078401 (-) False dip2a
XM_039818088.1 mRNA upstream 41004 14996489 ~ 15078401 (-) False dip2a
TU166598 other downstream 148628 14784561 ~ 14794497 (-) True G123886
TU166600 other downstream 153219 14784561 ~ 14789906 (-) False G123886
TU166096 other downstream 2323310 12619353 ~ 12619815 (-) True G123481
TU165255 other downstream 5943002 8999462 ~ 9000123 (-) True G122878
XR_005640909.1 other downstream 6140035 8798035 ~ 8803090 (-) False ccnt2a
TU166697 other upstream 29000 14984485 ~ 14993789 (-) True G123960
unassigned_transcript_607 other upstream 461715 15417200 ~ 15417272 (-) True trnak-uuu_17
TU167157 other upstream 1143793 16099278 ~ 16101593 (-) True G124303
TU167228 other upstream 1423124 16378609 ~ 16380765 (-) False gcgb
TU168094 other upstream 3157625 18113110 ~ 18115089 (-) True LOC120569287

Expression Profile