RNA id: XM_039817904.1


Basic Information

Item Value
RNA id XM_039817904.1
length 1159
RNA type mRNA
GC content 0.47
exon number 4
gene id zgc:162944
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 22744460 ~ 22747518 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTGCAGAAGAATAAGAAGTAGAAGAAGGGGGCGTCCTCTCCGCTGACTGACAGTCCGCCATGCTCACCCTGCTGCACCACTGTAGTCGTAACTTCTTGACATTCAGCACAATTCAGACAGTTAATAGAAGTTACTACACGACACAGATGGGTAAGCGCGTGGCTGTGGTGTTGGCAGGCTGCGGAGTTTATGATGGCAGTGAGATCCACGAGGCCTCCGCTGTTTTGGTCCACCTGAGCAGAGGAGGTGCAAGTGTAAACATGTTTGCCCCAAACATTGACCAGATGCACGTGGTGAATCACCTGAAAGGCGAACCGTCTGAAGAGAAGAGAAATGTGTTGGTGGAGAGTGCAAGACTGGCCCGTGGAGACATCCAGGACCTGTCTAAACTCAGTGTTAAAGACCATGATGCTGTTATCTTCCCAGGCGGTTTTGGTGCAGCGAAGAACCTCTGTACGTGGGCCGTGCAAGGGAAGGACTGCTCCGTTAATGACGAGGTTAAGGCAACGCTGCAGGCGTTCCACGGTGAGGGTAAACCCATCGGCCTCTGCTGCATCTCACCTGTCCTGGCTGCCAAGGTGTTTCCTGGCTGTGAGGTCACCGTCGGTATCGAGAAGGATGACAAGTATCCCGACACTACTGACACCGCAGCGGCCATCAACCAGTTGGGCTGCAAGCACGTGAGTAAGAGCGTCAGCGAGAGCCACGTGGACGAGAAGAACAAGCTGGTCACCACCTCTGCGTTCATGTGCAAAGCTCCAATACATGAGATATTTGATGGAATCGGAGCGATGGTGCAGGATGTGTTGAAACTTGCTTAAGTGTACTAGAAAGATGGCGGAAACGGAAAGAAAAGAATGGGGTGCTGTTGTTTAAGAGAGCTTAATAGTTGCCGCCTGCTGAACTGAGATAGAATGATGTTACAGTAACTCTTCGATTTAAAAACGCTTCCATATACTCTTAAAATATACATGTTTGTAATAGTAATGTGTACTACATGGTCTGATTTATTTTGCCAAAATCTCCATTTGACTAAATCTTATTGGATTACATTCTAATACAGTGGATCCGTATGATGTTGGCAATGCTAATCACGTTTTAGAAAATCAACAGCAACTAttgtacaaaaaaaatgcaataaaatgaaACTGTTCACGTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169856 lncRNA upstream 5807 22734060 ~ 22738653 (+) False fbxl3a
TU169843 lncRNA upstream 85568 22657517 ~ 22658892 (+) True G126290
TU169833 lncRNA upstream 104698 22639470 ~ 22639762 (+) True G126280
TU169807 lncRNA upstream 123852 22616311 ~ 22620608 (+) False G126267
TU169808 lncRNA upstream 125539 22616311 ~ 22618921 (+) True G126267
TU169931 lncRNA downstream 23192 22770710 ~ 22770920 (+) True G126352
TU169937 lncRNA downstream 50383 22797901 ~ 22798312 (+) True G126358
XR_005640940.1 lncRNA downstream 219108 22966626 ~ 22969170 (+) True LOC120569671
XR_005640941.1 lncRNA downstream 219108 22966626 ~ 22969170 (+) False LOC120569671
TU170077 lncRNA downstream 345780 23093298 ~ 23099790 (+) False dachd
XM_039817900.1 mRNA upstream 5811 22730923 ~ 22738649 (+) False fbxl3a
XM_039817901.1 mRNA upstream 5811 22730962 ~ 22738649 (+) True fbxl3a
XM_039817899.1 mRNA upstream 14037 22668306 ~ 22730423 (+) False mycbp2
XM_039817088.1 mRNA downstream 5587 22753105 ~ 22754604 (+) True kctd12.1
XM_039817698.1 mRNA downstream 103423 22850941 ~ 22855543 (+) True commd6
XM_039817696.1 mRNA downstream 109432 22856950 ~ 22887388 (+) True tbc1d4
XM_039817693.1 mRNA downstream 121538 22869056 ~ 22887388 (+) False tbc1d4
XM_039817694.1 mRNA downstream 121538 22869056 ~ 22887388 (+) False tbc1d4
XR_005641000.1 other upstream 1055658 21655131 ~ 21688802 (+) False LOC120569986
XR_005641085.1 other upstream 1117008 21619348 ~ 21627452 (+) False sox1a
TU169142 other upstream 1879018 20860152 ~ 20865442 (+) True G125757
TU169140 other upstream 1885550 20853089 ~ 20858910 (+) True mpc2b
TU168970 other upstream 2223186 20492178 ~ 20521274 (+) False G125627
TU169945 other downstream 59675 22807193 ~ 22815102 (+) True G126363
XR_005641105.1 other downstream 2119803 24867321 ~ 24867439 (+) True LOC120570682
TU170822 other downstream 2882589 25630107 ~ 25658726 (+) False cacnb4a
TU170823 other downstream 2892288 25639806 ~ 25658726 (+) False cacnb4a
TU171128 other downstream 3369470 26116988 ~ 26129879 (+) True G127165

Expression Profile