RNA id: XM_039817924.1


Basic Information

Item Value
RNA id XM_039817924.1
length 7584
RNA type mRNA
GC content 0.48
exon number 55
gene id LOC120569811
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18261889 ~ 18351263 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TATACACCTCCTGTCTGGCGCTTGACGGCCAATGAAACACTTCTCAAGAGGATCCTTTATTATGACAACAATAAATCCGATGGAAGAAGGGAGCGCGCCGGAATAATGCAGCACGCGTTGACTTTTAAAAGCGACAAGTATGCAATCGAGAGTTGGGAATGAATCAGCAGCTACACCACAACATGACCCAGCTTCAAACTCGTGCTGCTCCCTAGCGTGGATCGGAGAAACGGATACACCGGTGATGGTTTTCCTTTAAAGCTCGCTTGTAGAACTTTTATTAAACCGTTATTGATGCAAAGTGGTGCGCAACAATGACTACTCCAGTGCATCCGGAGACCAGGAGATTTACGCGGGGTCTAGGTAAACCCGGCACCGCGGCTGAACTCAGGCAAAGTGTCTCTGAGGTGGTCAGGACTTCCGTGCTGGTTGTAAAGCCGAAGGTGATCGAGCCGCTGGACTATGAAAATGTGTTGGTGCAGAGGAAGACGCAAATCCTCAGTGATGTCCTCAGAGACATGCTGCAGTTCCCCCTGGAGGACTTTGAGATTTTAACTTTGAGGCGGCAAGGGAGAACTCTCTACCCCACAGTGCCTGTAAATGCAGAGCGGGAGGCCCAGAGTCTGTTTGTCCAAGAGTGCATTAAGACCTACAAGTCTGACTGGCATGTCGTCAACTACAAGTATGAGGACTATTCTGGAGACTTTCGACAGCTTCCAAAcaAAGTGTCCAGGCCTGATAAACTGGCTGTCCATGTATTTGAAGTGGATGAGGATGTCGACAAAGATGAGGATACGGCCTCCCTGGGATCCCAGAAAGGCGGGTTTTCCAAACATGGCTGGCTCTATAAAGGCAACATGAACAGTGCTATCAGTGTCACCATGAGGtcaTTCAAGAGGAGGTATTTCCATCTAACCCAGCTCGGGGACGGCTCTTATAATTTGAACTTCTACAAGGATGAGAAGATTTCCAAAGAGCCCAAAGGAACCATCTTCTTGGACTCCTGCATGGGTGTGGTTCAGAACAACAAGGTTCGGCGGTTTGCTTTCGAGCTGAAGATGCAAGATAAGAGTACCTACCTGCTGGCTTCAGACAGCgaaggagagatggaggacTGGATCAACACGCTCAACAAGATCTTGCACAGCAGCTTTGAGATCGCTATGCAGGAGAAGAGGAACGGAGACATtcatgatgATGATGATCTTGGAAAGTCAGACAGTTCCTCTGGCAGCATGGACAGCTTTCAGAGTGCAAGAGATATAGAGTCTAGGATGAGGAACGAGACCAGATTGAAGCTGTTCACCCTGGACCCTGACACACAGAAACTTGATTTCTCAGGAATAGAGCCGGATGTGAAGCAGTTTGAAGAGAAGTTTGGTAAGCGTGTTCTGGTGAACTGCAATGACCTCGCGTTCAACCTGCAAAGCTGTGTGGCCGAGAACGAGGAGGGACCAACCACAAACGTGGAGCCATTTTATGTCACCCTGTCACTGTTCGACATCCAGAACGGCAGGAAGATCTCCTCTGACTTCCACGTGGACTTAAACCACCCGTCCGTAAGGGGCATGGTGCCCAGTAACACCAGTCAGTATATGAACGGGGGAGGGGACACCCATCCTGAGGGGCAGCGGTTGGTCCATGGGGTGCCAGAGGCAGCCATGCAGTATCCAAGACTGGGAGTGTTCTCGGTAACGTGCCCCCACCCAGATATCTTCCTGGTGGCTCGCATAGAGAAGGTGCTCCAGGGGGGAATCAACCACTGTGCCGAGCCGTACATGAAGAGTTCAGACTCCACAAAGGTGGCACAAAAGGTCCTGAAAAATGCCAAGCTGGCATGTTGCCGGTTAGGACAGTACAGGATGCCTTTTGCCTGGGCAGCAAGGCCTTTGTTCAAAGATGCTTCAGGGACGCTTGATAAAAGTGCTCGTTTCTCAGCCCTGTTCAGACAGGACAGCAACAAGCTATCCAATGATGATATGCTCAAACTGCTGGCCGATTTCAGAAAGCCAGAGAAGATGGCCAAGCTGCCTGTGATCCTAGGAAACCTTGATGTTACCATAGACAATGTAGCCCCCGACTTAACAAATTGTGTTACCTCATCCTACATTCCCGTGAAGCAGTTTGATGTCAGCGACAAGACCAACATCTTCTTTGAAGTGGAGGAGTTTGTGCCGTACATAGCCAAATGTTCTCAGCCTTTCACCATCTACAACAATCACCTCTATGTCTATCCGAAGCACTTGAAGTACGACAGCCAAAAGTCATTCGcaaagGCTAGAAACATAGCTGTCTGCATTGAGTTCAAGGACTCAGATGAGGAAGAGGCTGTTTCATTGAAGTGCATCTATGGCAGACCTGGAGGACCCTTGCTTACCAAAAATGCCTTTGCTGCAGTATTACATCACCAGCAAACCCCCGAATTCTACGATGAGTTTAAGATTGAGCTGCCAACCCAGCTCCACGAGAAACATCATCTGCTCTTCACCTTCCACCATGTCAGCTGTGACAGCAACAGCAAGGCCAGCACCAAAAAGAGAGACCTGGTTGAGACTCAAGTGGGATACGCCTGGCTCCCCCTGCTGAAAGACGGCCGGGTGACCATGAATGAGAGTCAAGTCCCTGTAGCTGCAAACCTGCCTGCTGGATACCTTAGCTGTCAGGAGGGTGCCAGCAAGCATTCAGGCCCAGAAGTCAAATGGGTGGATGGAGGCAAGCCTTTATTTAAGGTTTCCACTCACCTTGTGTCCACTGTCTACACTCAgGATCAACATTTGCACAATTTCTTTCATCACTGTCAGAGCACTGCACCTGCAACCCAGGTGTCAGGAGGAGAACTGGTCAAATACCTGAAGAGTCTGCATGCCATGGAGAGCCATGTGATGATAAAGTTCCTGCCCACAACCCTGAATCAGCTGTTCAGGGTGCTAACCAGTGCCACCCAAGAGGACGTGGCAGTCAACGTCACCAGAGTCATGATTCACATTGTTGCCCAGTGCCACGAGGAGGGATTGGAGCACTACCTGAGATCATATGTGAAGTTTGTATTCAAGACTGAGCCACAAACATCCTCAACCAACCGATCAGTGCACGAGGAGTTGGCTAAAGCCATGACTGCTATCTTGAAGCCTTCCACTGACTTTCTCACGTGTAACAAACTCCTCAAGTATTCCTGGTATTTCTTTGAAGCCTTAGTCAAGTCCATGGCTCAGTACTTGATTGAGAGCTGTAAAGTGAAGCTGTCCAGGAATCAGCGCTTCTCCGCATCCTTCCATCACACTGTGGAGACTCTGGTCAACATGATGATGCCACACATCACTCAGAAATACAAAGACAACCTGGATGCCGCCAGGAACGCCAACCACAGTCTTGCAGTCTTCATCAAGCGTTGTTTCAACCTGATGGACAGAGGCTTTATGTTCAAGCAGATCAACAACTATATCAACTGTTTTATGCCTGGAGACCCAAAGACGCTGTTCGAGTTCAGGTTTGAGTTCCTGCGTGTTGTGTGCAGCCACGAGCACTATGTCCCCTTAAACCTGCCCATGCCATTTGGAAAAGGAAGGATACTGAGGTTTCAAGACCTCCAGATGGATTACTCGCTGACAGATGACTTCTGCAAGAACCACTTCCTGGTCGGGCTGCTGCTCAGGGAGGTCAGTGTAGGTCTGCAGGAGTTCAGGGAAATTCGTCAGATAGCCATCCATGTGCTGAAGAATCTAATGATAAAGCACACATTTGATGACCGCTACAGCTCCAAAagCCAGCAGGCCAGGTTGGCCACCCTGTACTTTCCCTTGTTTGGTCTGCTCCAAGAGAATGTCAACAGACTGAATGTGAAGGAAGTATCCCCATTCACCATCAACCACTCCAACAATAATGGAAGAGAAGATTCACTTCTTACCAACACTTTGATAACACCTCCCAGATCCAGCACCTTTCTGGACACCAGCTTGCACAAAGATGTTTTTGGAGTCATCTCTGGCACCTCTTCACCTCACGCGTCGTCAACCCCCAACATTAACTCTGTGCGCCACGCAGAATCTCGCGGCTCACTCATCAGCACTGACTCTGGCAACAGCCTGCCTGAGAAGATCAATGACAAGTCCAACTCTCTCGACAAGAACCAGGCTGCTTCGACAATGGGCAGTACCCTGCTGCGATGTGATAAACTGGACCAGGCAGAGATCAAGAGCCTCCTCATGTGCTTCTTACACGTGCTCAAAAGCATGTCTGAGGaTGCTCTGTTCACATACTGGAACAAGGCTTCATCTGCTGAGTTAATGGACTTCTTCACTCTGGTCGAAGTGTGCCTCCATCAGTTCAGATACATGGGAAAGAGATACATCGCAAGGAACCAGGATGGGGCAGGACCTGTAGCACATGAGCGGAAGTCTCAGACTCTGCCTGTGTCCCGTAACAGGGCGGGAATGATGCATGCCCGCTTACATCAGCTCAGCAGCCTGGATAACTCATACACTTTTAACCACACCTACAGTCACTCGGATGCAGACGTGTTAAATCAGTCACTGCTGGAGGCTAACATCGCTACGGAAGTGTGCATGACCGTCCTGGACACGCTAAGTATCTTCATCATGGGATTCAAGACCCAGCTGTGCTCTGACCACGGCCACAGTCCACTAATGAAGAAGGTGTTTGAAGTCCACCTCTGTTTCCTGCGGATCAATCAGTCAGAGACGGCCCTCAAGCAGGTCTTCACTTCATTGCGCACCTTCATCTACAAGTTTCCTTGCACATTTTTTGAAGGACGTGCTGACATGTGTGCTGCTTTCTGCTATGAGATCTTGAAGTGTTGTAACTCCAAGCTGAACTCCATTCGCAGCGATGCCGCCCATCTGCTCTACTTCCTCATGAAGAGCAACTTTGATTACACAGGTCGCAAGTCTTTTGTTCGGACACACTTACAGgTGGTAATTGCTGTCAGTCAATTGATAGCTGATGTGATTGGTATCGGAAGTACCCGCTTTCAGCAGTCCCTGTCAATAATCAATAACTGCGCAAACAGTGACAAAACTATTAAGAACACAGCGTTCCCATCAGATGTGAAGGACCTGACCAAACGCATCAGAACAGTTTTGATGGCCACGGCTCAGATGAAGGAGCACGAGAGAGATCCAGAGATGCTGGTGGACCTGCAGTACAGCCTCGCCAAGTCTTACGCCAGCACACCAGAACTACGCAAGACCTGGCTGGACAGCATGGCCAGGATCCATGTGAAGAACGGAGACCTGTCAGAGGCGGCCATGTGCTATGTGCATGTTGCAGCACTTGTGGCAGAATACCTGCGGAGAAAAGGCATGTTCAAGCAGGGCTGCTCAGCGTTTCGTGTCATCACTCCAAACATTGATGAAGAAGCAGCAATGATGGAGGACGTCGGCATGCAGGACGTTCATTTCAATGAAGACGTCCTAATGGAGCTTTTGGAGGAGTGTGCAGATGGACTGTGGAAAGCTGAGCgttacgagctcatctctgacATCTACAAGCTCATTATCCCCATTTATGAGAAGCGGAGGGACTTTGAGAAACTGGCCCACCTATATGACACCCTGCATCGTGCATACAGCAAAGTGACAGAGGTCATGCACTCAGGCAAGAGACTGCTGGGCACCTACTTCAGAGTGGCCTTCTTTGGCCAGGCAGCGCAGTACCACTTTACTGACTCAGAGGCTGAGGGCTTCTTTGAAGATGAAGATGGTAAGGAGTACATCTACAAAGAACCCAAATTCACCCCACTATCGGAGATATCTCAGAGGCTTCTGAAGCTGTACTCTGACAAGTTTGGACAGGAGAATGTGAAGATGATCCAAGACTCTGGCAGGATTAACCCCAAAGACCTGGATTCTAAGTTTGCGTACATCCAAGTGACACATGTGACCCCTTACCTGGAGGAGAAAGAGCTGGTGGACAGGAAGACAGACTTCGAGAAGAGCCACAACATCCGTCGCTTTGTGTTTGAGATGCCTTTCACCATATCAGGCAAAAAGCAAGGCGGGGTGGAGGAGCAGTGCAAACGCAGGACTATACTAACCACCACGCATTGTTTCCCTTACGTAAAGAAACGCATCGCAGTGATGTATCAACACCACACTGATCTGAGCCCCATCGAGGTGGCCATCGATGAGATGAGCAAGAAGGTGGCCGAGATCAAACAGCTGTGCTCCTCCAGTGAGGTGGACATGATCCGTCTGCAGCTCAAACTGCAGGGCAGCATCAGCGTCCAGGTAAACGCAGGACCGCTTGCATATGCACGAGCTTTTCTGGATGATGCATGCGCCAAGAAGTATCCTGATAACAAGGTCAAACAGCTGAAAGAGGTCTTCAGGCATTTTGTTGAGGCATGTGGCCATGGCTTAAGTATTAATGAGCGTCTGATCAAAGAGGACCAACAGGAGTATCACGATGAGATGAAAGCCAGCTATAGAGACCTAGCTAGGGAGCTGTCCATCATCATGCGTGAGCAAATCAGTCCTGTGGAAGATGGTATGAAGAGCGTTCTTCCAGACTCGCTTCACATCTTTAACGCCATCAGCGGCACTCCAACCAGTGCCACCATCCATGGCATCCCCAGCTCTTCCTCTGTGGTATGATGCTTGCCTGGGTTAGCCTTAAACCCTGCGCCCTCTATACTCGCCAACCAGGCATGCCGGTGATGCCATATTGTCGCTTTTGAACCCGATCCTGCTTTAGTCAGCTTAAAGGGAAACTGACATAAGCACAGACAACCATGACCAAGGCACTGGACCTATTTAATGTATACACACGGCATGGTAACTGTGTTGGATGTCTGTGACAGTACTGAGGAGAAATCGGAGACCAGAGAGGGGATCATGCAGGAGAGATGACAGACTTTGCAACCTGCTTCATGGCCACGCATAATGTGTCACTTGTTTTTACCTGAAAAGACTGGGCAGTGTTTTCAATGGAGACATTCCTGTTGGGCTCTTTGATATGCATGTCATTATATTACACCCACCACCCTCCCAACAGcccatttttgtttattttgatgatatttttaatattttacaatgtgtttttgtatgtacagtattcCACTTTTATAAGCCACTGTATTGATGTCTTGATGAACACTATATGCTGCATACATTGATGCTCATCTACCTGTACATGAAGTTATATTTCTACTAAAAGGGCCTCCTATGACTCATGTTAGCATTCAACCTTAAATCACTTCAATGTCTTAGAATGGTagtgtttttaaatatttaaagccATTGCATACAAATGTTATATTCCAAATTGTTAATTAATGTATATAAAAAAGGAGTGTGTGCAATATTTGCAAAGTATCTGTGTGGGGCTCATACACTGTAAAGATGATGTTCACCTTCTTGCCAAAGTGATGAGGTGTGGAACCAGACACTACGCCTACTGTGGAAGTTATTTGAATCTTATTTgaaattgttttatatttgggcagcaatgttttttttttatttttgtttttattttttttatttaacataaagTTACTGTTCTGCTGTAAACAGAGATGTTGCCTaatgcttttcttttaaataaaacacaaatttcTCTGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640987.1 lncRNA downstream 49933 18208738 ~ 18211956 (-) True LOC120569840
TU168090 lncRNA downstream 169359 18092327 ~ 18092530 (-) True G125000
TU167930 lncRNA downstream 238412 18022409 ~ 18023477 (-) True G124872
XR_005640876.1 lncRNA downstream 439402 17737284 ~ 17822487 (-) False LOC120569506
TU168246 lncRNA upstream 349624 18700887 ~ 18702962 (-) False G125090
TU168251 lncRNA upstream 349624 18700887 ~ 18702696 (-) False G125090
TU168245 lncRNA upstream 350469 18701732 ~ 18702696 (-) False G125090
XR_005641073.1 lncRNA upstream 464583 18815846 ~ 18819321 (-) True LOC120570508
TU168264 lncRNA upstream 464583 18815846 ~ 18816009 (-) False LOC120570508
XM_039817133.1 mRNA downstream 204 18250861 ~ 18261685 (-) True slc15a1a
XM_039817970.1 mRNA downstream 12328 18234041 ~ 18249561 (-) True stk24a
XM_039817964.1 mRNA downstream 36411 18182201 ~ 18225478 (-) False LOC120569835
XM_039817990.1 mRNA upstream 1090 18352353 ~ 18419250 (-) False LOC120569851
XM_039817989.1 mRNA upstream 1090 18352353 ~ 18419250 (-) True LOC120569851
XM_039818892.1 mRNA upstream 77725 18428988 ~ 18441372 (-) True LOC120570503
XM_039817843.1 mRNA upstream 91271 18442534 ~ 18459117 (-) False LOC120569776
XM_039817845.1 mRNA upstream 91271 18442534 ~ 18459116 (-) False LOC120569776
XR_005640956.1 other downstream 98140 18156732 ~ 18163749 (-) False prkra
TU168094 other downstream 146800 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other downstream 146800 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other downstream 146800 18113572 ~ 18115089 (-) False LOC120569287
TU167228 other downstream 1881124 16378609 ~ 16380765 (-) False gcgb
TU168240 other upstream 344217 18695480 ~ 18699802 (-) True G125089
TU168241 other upstream 344217 18695480 ~ 18696368 (-) False G125089
TU168243 other upstream 350385 18701648 ~ 18704552 (-) True G125090
TU168242 other upstream 351832 18703095 ~ 18704677 (-) False G125090
TU168244 other upstream 351866 18703129 ~ 18704677 (-) False G125090

Expression Profile