RNA id: XM_039817935.1


Basic Information

Item Value
RNA id XM_039817935.1
length 1141
RNA type mRNA
GC content 0.53
exon number 1
gene id tmem223
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 12184466 ~ 12185606 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCCCTTGAGCTGCAGATGTCCGGTGtgttataataatacattaatgGTTGGGAGAAAATAACGATTTCTGAACATATCTTATCATAGTTCTCTGGCCTAACAGTTTCGGGAGGATCAAAGCCATTTTTATCGCCGTGGAAAATGGGTTTACAGCGATTGCTATGCGGGACGCTGGCGTGTTACTCCAAACAGTTTCGACTCGTTGACGTTCGGCAAGAAGTCCGGGTCTTTCAAAAAGCGCCGATGTCCGTACAGACTTCACCGAGCATGTCCAACATTGTTAACCGGGTTGCGTGTGTAGCAGGTCTGTGTAGCAGGATGTTCGTTCAAACAAGCCGCCGCGGTGCCGCTAATAACGGACCGCTGTCTGCCCGCCGCAGCCTCTGCACCTCCGCCCAGCCCTCCAGGGACGTCGTCCTGTTCGAGCACGACAGAACCCGCTTCTTTCGGCTCCTCTCGGTCTTCTGCGGCGGCCAGTTCCTCTTCTGGACATACCTGGGCCACTTCGCTTACACTGGGCTCAGAGACACAGGTGGCGCTACAGAGAAAGGGAAAGCCGAAGCGTCCGCCGCCGCcaccgccaccaccaccaccaccaccgggCTGGCTGGGATGTGGAGTTTTGAGCTGAACCTGGGGTCAAACACCTGGAGGTACGGCTTTACGCTGGGATGCCTGGCAATAGGAGCGGGGATTGTCGGGCTCGGACTCTTGTTCTGCAGGCGCTCTGTCAGCCAGGTGGTGTTACACCAAGGTGGGAGGATGGTGACGGTTTCCACGCAGTCACCTTTGGGACCAGGCCGAGGCCGGAGAATAACCGTCCCACTGTCCCAGGTAGCCTGTCACGCTCACAGACACGAGTCCCCCACATTCATCCCCCTCAGGGTCAAAGGACACAAGTTTTACTTTCTTCTGGACAAAGAGGGGACCGTGAACAACGCTAGGCTGTTTGACATCACTGTTGGGGCTTACCGGCCACTTTAAGTTCTTCTGgttattattacattgttgCCAAAACTGTGTTGGACACCAAACCCCAATGGAACTGGTCCACAGAAAGTGATTTGACATGGCTGCCAAACAAATATCTCAATTTCTGTTTGATTCTCTCacttcaattaaataaaatctgAGATCAAA

Function

GO: NA

KEGG:

id description
ko04114 Oocyte meiosis

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165977 lncRNA upstream 6454 12118381 ~ 12178012 (+) False G123386
TU165974 lncRNA upstream 44143 12118381 ~ 12140323 (+) True G123386
TU165975 lncRNA upstream 53014 12118381 ~ 12131452 (+) False G123386
TU165986 lncRNA upstream 53237 12126331 ~ 12131229 (+) True G123395
TU165982 lncRNA upstream 61595 12122565 ~ 12122871 (+) True G123391
TU166040 lncRNA downstream 47077 12232683 ~ 12236291 (+) True G123439
TU166058 lncRNA downstream 76161 12261767 ~ 12264331 (+) True G123453
TU166059 lncRNA downstream 77790 12263396 ~ 12264331 (+) False G123453
XR_005640888.1 lncRNA downstream 227946 12413552 ~ 12415344 (+) True LOC120569536
TU166093 lncRNA downstream 417790 12603396 ~ 12603607 (+) True G123479
XM_039819133.1 mRNA upstream 71203 12060670 ~ 12113263 (+) True LOC120570655
XM_039817233.1 mRNA upstream 171729 12007657 ~ 12012737 (+) False serp2
XM_039817833.1 mRNA upstream 203630 11949115 ~ 11980836 (+) False LOC120569768
XM_039818745.1 mRNA downstream 67498 12253104 ~ 12261257 (+) True LOC120570413
XM_039818743.1 mRNA downstream 67815 12253421 ~ 12261257 (+) False LOC120570413
XM_039817398.1 mRNA downstream 440368 12625974 ~ 12632469 (+) True stx19
XM_039818451.1 mRNA downstream 751369 12936975 ~ 12947546 (+) True zgc:152951
XM_039818452.1 mRNA downstream 751369 12936975 ~ 12947546 (+) False zgc:152951
TU165581 other upstream 1565770 10607484 ~ 10618696 (+) False lrp1bb
TU165424 other upstream 2255575 9926817 ~ 9928891 (+) False umps
TU165423 other upstream 2259626 9920711 ~ 9924840 (+) False umps
TU165208 other upstream 3387720 8795453 ~ 8796746 (+) True G122846
TU164880 other upstream 5035427 7146625 ~ 7149039 (+) True G122588
TU166170 other downstream 864152 13049758 ~ 13279866 (+) True G123539
TU166270 other downstream 1167700 13353306 ~ 13354085 (+) True G123633
TU166312 other downstream 1449980 13635586 ~ 13677346 (+) False cps1
TU166397 other downstream 2047726 14233332 ~ 14234070 (+) True G123742
XR_005640926.1 other downstream 2952871 15138477 ~ 15155886 (+) False trpm2

Expression Profile