RNA id: XM_039817997.1


Basic Information

Item Value
RNA id XM_039817997.1
length 3263
RNA type mRNA
GC content 0.45
exon number 3
gene id evx2
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17852869 ~ 17857052 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAATGATCATTGGAGCAACGTCAGCCGAGCATTTTAACAACGAACAGCAACCACTTTTGATGAATGACATTTTGCTGCTGTGGGGAGGATGCACGGCTCATTTTGAGCAGTCGCTCGTCGATTGCATTCAGATTCTTTCATTTTTTGCGTCTTGCTTATAAAAAGGTTTAGAGACCGTTATTTAGAGACAGTTGCTGACTTTCATGCGGATTTAAGCTCCGACACAACTCATTGGTGCTCCAGCCCCCCCTGGACAAGTGTTGTGtggcgtttctttttttttggttgctttttttccccGTCTTGCACGGCTTAATGATGGAGAGGATAAGAAAAGAGATGATATTGATGGAGAGAGGTCTGCACAGTCCCGTCGCAGGGAAGAGGCTCGCAGACACGCCTGGAAATTCAGTGCTGGAGGCCCTGGAAAACTCTCAGCACAGCGGACGGCTAAGCCCGAGAATAACTTCGGCTTCTCTCCATGGAAATCTTGGGGACATCCCGACGAAAGGCAAATTTGAAATTGACAGTATTTTCGGTACACACCACAACAGTGAAAATACCTCTTCGGCGGAAATTTCTTCGTCAGAAAGCAGGAAGAAAATGAGCCTCTACTCCGAAGTTTCGCCAGATTCCGATATTAACAGTGATGTGGAGGTGGGATGCCCTGCGCATCGCTCCCCGAGCCAGCACAAGGAAAACAACAAAGgtttTTCAGACAGCAATTCTGGATCTTCCAACATAAGCTCGAACTCCCTCCAGAATATGAACGGTAATTCATCGGGAGGATCAAACAATTCAAATAGCGACCAAGTGAGAAGATATCGGACTGCTTTCACCAGAGAACAAATCGGGAGACTGGAAAAAGAGTTTTACAGGGAAAATTACGTTTCGAGACCAAGAAGATGTGAATTAGCCGCAGCGTTGAATCTGCCCGAGACTACGATTAAGGTGTGGTTCCAGAACAGGCGGATGAAGGACAAAAGGCAGCGTCTGGCGATGTCCTGGCCCCATCCAGCAGACCCCAGCTTCTACACTTACATGATGACGCACGCTGCAGCTACAGGAAGTCTACCTTACCCTTTCCACTCGCACATGCCTCTCCATTACTACCCGCACGTCGGAGTCACGGCAGCAGCGGCCGCTGCTGCCGCTTCCGGCGCCGCGTCGTCACCTTTCGCCACCTCCATCCGCCCCCTCGATACCTTCCGAGCACTCTCCCACCCCTACTCGCGGCCGGAGCTCCTGTGCAGCTTCAGGCACCCGGGACTCTACCAGTCACCCGCAGGCCTGAATAGTTCAGCAGCGGCGTCAGCGGCGGCCGCGGCAGCGGCAGCGGCGGCGGCGGTCAGCGCCCCGTCAGCCACCGGGCCGTGTTCGTGTCTGAGCTGCCACAGCAGCCAGGCGGCGAGCGCGCTGGGCTCCAGGAGCGCCAGCGGGGACTTTACCTGCACAGCTTCGGGCCAAAGATCCGAGAGTGGATTTCTGCCGTATTCTGCTGCTGTTCTCAGCAAGACATCCGTCCCGTCACCAGACCAACGAGAAGAAACTTCACTTAACAGATAACTCATCATGCAGCCTACACGACCTATTTCCTATTTTTCTCTAGTCCTACTTTAGGGGATAGGCCTAGGCCCACTCTAAAAACCACACCTGGGTAAATCATTCGTTTATTCGGCAGcattgtaaacacacacacacacacacacacactctcttagGTTAATTTTTACAAGTCCAAAATACTCTTTATAACAAAAAACACACGAATAGCTAGCACCGAAAATGTTGCACCTCacaaaaaaccttttttaaaagCCTGTGGCAGCTTGTGTTGTGCCTGTAGACCTATTTCTACGCTGGATTAATTTGGAAAAATAACAGGCCATGCTGTGTATCCATTCAGTCCCTATGCCTCAATCCATGTgccattttaaatgtatttatttatttataggcTACAAATGCTACAAATTACCAACAACTGTCATTCAGTCACAGtccatatttcttttttaatattcaCCGTGACGAACCCAGCCTGGTTACCTTGACTCCTCTGGTTTTTAAAATTCAAACGTGAGTGAATTATGCTATCTAAATTTAGATAGCAGAAGGTCCTGCTTTTCTGCCCAGCAGCATATCTTTCTTCACTAGGCCTAATAGACTGAGATTTTGGCAGGGATAGCTCCAACACCCAGCCTCTGCTCTATGGGGACCCTCCTAATCAGCTAGAAGGGTGCATATAATTTTGGACCGCGTCTTTCGTGTCAATTCTTATGTTAATAATGAGAGGATCATGACAAAAATTGCCAATCATGTACCTAGATGGAGCTCCTCTGAATACATGACTGTAAGAAAGTTGCTCGTTTTGAGACCTGCTGTCAAGTGCTAACAACCCGCGGAGGGAAGTCATTAGACATACAAAAGACCTGGAACAAAGCGACAGTCCTGGTACACAGATGCActgtataaaaataatatatgacACATGTAGGGTTTCAAAATATTAGCCTACACACAAAAGCAGCCTACAAAGTCCCAAATTTAGTTTTCTGATAAATACCTCGACACACAGTAGCATCTCTTTTATTTACATTGCTGAACCTCATCAAATCCAGTATTTTCATAGGTATGTAATCCTTTAGGACCTCTTCACTCAGCAGACACATGACGGGACTGAGCAAGGCGAAAGTTCAGACTAAATAGCCTGGCTTTAATCTGTCTGCGCCTGTAAAAATGGCTATGTGCTATTTTATTCGTTCCTGTTGGGACATCACCAATATGTTAATTATCAAACATGTGAACTGTAAATCGTGACATATTTTGCAAATATCATGGATAGTCCTACTGATAGTTGAAAACTGAATTATTGATCGCTCTGGAAAATGCTTCATGAAATGTGGATGGTAGGctattttttaacacttttgtgAGACttgctgaatgttttttttttatgtttaaacacTGGATGTACACACTAATAGGAGCATCAAATAGCCTACGAATTGGCCTGTAAACTCACCAATAGTCCAAAATATTGATATTGGGTGTAAAAATTAAGACTGAATTATGGAGAACATTTCTTTATAGTCCACTCAAAAGAGGCTTTAAAAAGGGCTGATAAACGAGCactgaaattaaaatgatgaaaATAGTATTGGCCTTTGTCCTTATAGGGTCTCTGTTATAACTCTATATCTCTGTATTTAAAATATCAATGACTGTatgaatttaaatattttaacttgaaaaaaaaa

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09320 EVX; homeobox even-skipped homolog protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640878.1 lncRNA downstream 30382 17737284 ~ 17822487 (-) False LOC120569506
XR_005640876.1 lncRNA downstream 30382 17737284 ~ 17822487 (-) False LOC120569506
XR_005640877.1 lncRNA downstream 30382 17737284 ~ 17822487 (-) True LOC120569506
TU167694 lncRNA downstream 502123 17347911 ~ 17350746 (-) True G124691
TU167700 lncRNA downstream 558229 17291927 ~ 17294640 (-) True G124695
TU167930 lncRNA upstream 165357 18022409 ~ 18023477 (-) True G124872
TU168090 lncRNA upstream 235275 18092327 ~ 18092530 (-) True G125000
XR_005640987.1 lncRNA upstream 351686 18208738 ~ 18211956 (-) True LOC120569840
TU168246 lncRNA upstream 843835 18700887 ~ 18702962 (-) False G125090
TU168251 lncRNA upstream 843835 18700887 ~ 18702696 (-) False G125090
XM_039817996.1 mRNA downstream 16783 17827078 ~ 17836086 (-) True lnpa
XM_039818977.1 mRNA downstream 120277 17730065 ~ 17732592 (-) False atp5mc3a
XM_039818978.1 mRNA downstream 120331 17730065 ~ 17732538 (-) True atp5mc3a
XM_039818527.1 mRNA downstream 123530 17712254 ~ 17729339 (-) False atf2
XM_039818525.1 mRNA downstream 123531 17712254 ~ 17729338 (-) True atf2
XM_039817797.1 mRNA upstream 161027 18018079 ~ 18025208 (-) True nfe2l2a
XM_039818618.1 mRNA upstream 208966 18066018 ~ 18112342 (-) True pde11a
XM_039817109.1 mRNA upstream 256463 18113515 ~ 18115097 (-) False LOC120569287
XM_039817111.1 mRNA upstream 256463 18113515 ~ 18115092 (-) False LOC120569287
XM_039817110.1 mRNA upstream 256463 18113515 ~ 18115086 (-) False LOC120569287
TU167228 other downstream 1472104 16378609 ~ 16380765 (-) False gcgb
TU167157 other downstream 1751276 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 2435597 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 2859080 14984485 ~ 14993789 (-) True G123960
TU166600 other downstream 3062963 14784561 ~ 14789906 (-) False G123886
TU168094 other upstream 256058 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 256458 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other upstream 256520 18113572 ~ 18115089 (-) False LOC120569287
XR_005640956.1 other upstream 299680 18156732 ~ 18163749 (-) False prkra
TU168240 other upstream 838428 18695480 ~ 18699802 (-) True G125089

Expression Profile