RNA id: XM_039818001.1


Basic Information

Item Value
RNA id XM_039818001.1
length 1653
RNA type mRNA
GC content 0.47
exon number 2
gene id hoxd9a
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17882466 ~ 17884616 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

cagaaaatgtgtttttattcgcCGAATGTTAACAATGGATACACCGCCTTGTGAACGGAAATGGCGTCTGTTATTTTACAACATGTTATTACATATATTTTACGAGGACTCCTTAAGTCTATAAAGCATTTTACTAGCATTGAGGGCATCAGGACGATATTAGGAGAGTGTTCTCCAACATTAAGTAAGATACGGGATGTTGGTGCACTGTGTGTGTTGGGGCGGGAAATATGTCTTATTCCTTTTTTGATCTGCTTGTATTGTTGCAGCGTCCTGCAGCCACCCGCACATGAGAAACAGAAAACCCCATTTGCATACATTTGAGCGATTGCTTTCTCCCCCCAGTCACATCTGATGGGGCTTTTTATTATTCGTGAAATGAAAAGCTAAATTAAACCTGACGACGAAAAAAAAAGGGCAGGATTGATTTACTCGCTGTATTGGTAAATATGACCACGTGATCCATGTAACCAATCCCTGTAGATGCAGGCCAGCAAAAATACTATGATTGTTCATAGAGGGAAGCTTCCCGTAACAGTGCAACCCTTATTATATGACTAGGAAGAGAtcaaaaatgtcttccagtggcACTCTCAGTAACTGCTATGTGGACGCTATAATGGGGCAGGAGCCGGAGGATGTCTACGGTGCTCGCTTTATTCAGGCTCCGCACACGGTGACGCCGAGGCCGTCAGGTGCTGGGGACAACGCAGACTTCTCCTCTTGTAATTTTGCACCAAAGTCCGCCGTTTTCTCGTCGTCTTGGTCCTCTGTTCACCCGCAGGGGATTTATCATCCGTATgtgcaccaccaccaccaccaccagtccCATCTCCCCGGCTCGGACGGCAGATATGTAGGCGTCCGCTCCTGGATGGACCCCATCTCCAACCACGTTTCTTTCGCCGGATTTCACTCCAGCAGTCGGCCGTACGGGACAAAGCCAGAGGTCTTGCCACCGAAAGCAGAGTGCGACACGCTGGAGGCAGAGGCTCGGCCGCTCGCCGGCGAATTCGCGTGTGGAGTATCGGAGTGTCCAGAAAAAGCGACCAAAGAGCATAGTGGAAGTGAGCTTTCGAGCCACAGCGAGCCCAAAGaggagaaacaacaacaactcgaCCCAAACAACCCTGCAGCAAACTGGATTCACGCACGCTCCACGAGAAAGAAGCGATGCCCGtacacaaaatatcagacatTAGAGCTGGAGAAGGAGTTCCTTTACAACATGTATTTGACAAGAGACCGACGCTATGAAGTGGCCCGCATACTCAGTTTAACCGAGAGACAAGTGAAGATCTGGTTCCAGAACAGGAGGATGAAaatgaagaagatgaagaaagaaAGCAGCGGCGGCAAGGAGCAGCTATGAAATCACTGCCATTTCACACATTTGTACCAAGGAAGCCATCTGAAAAATTAAATTCATTTTGGTAGGAGCCTCGGtagccattttcattttttagtcCATAGGTATAGCGTGATATTGCGTGTCAGTGTCCTAACGTGTTGGCCAAATATGCATCAAAATCACATGTGCAGGAATTTGTCTTGGTGAGACTCTGACAGGATCCATCAAATAGGCTATGTTTCATCTAAAATGCTCtctgttttacattttacacaacCGCAAGCAGTTCATCAGATGTGTTG

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09300 ABDB; homeobox protein abdominal-B and related proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167891 lncRNA upstream 961 17860753 ~ 17881505 (+) False G124841
TU167890 lncRNA upstream 12344 17860753 ~ 17870122 (+) True G124841
TU167881 lncRNA upstream 46240 17834219 ~ 17836226 (+) True G124834
TU167865 lncRNA upstream 145480 17736110 ~ 17736986 (+) True G124819
TU167860 lncRNA upstream 149215 17730056 ~ 17733251 (+) True G124816
TU167958 lncRNA downstream 204609 18089225 ~ 18089543 (+) True G124895
TU167968 lncRNA downstream 244635 18129251 ~ 18182236 (+) True G124901
TU167981 lncRNA downstream 302802 18187418 ~ 18188518 (+) True G124914
TU167982 lncRNA downstream 304224 18188840 ~ 18189132 (+) True G124915
TU167992 lncRNA downstream 349426 18234042 ~ 18297620 (+) True G124924
XM_039817998.1 mRNA upstream 1138 17879110 ~ 17881328 (+) True hoxd10a
XM_039817999.1 mRNA upstream 4313 17873682 ~ 17878153 (+) True hoxd11a
XM_039818000.1 mRNA upstream 12307 17867862 ~ 17870159 (+) True hoxd12a
XM_039817419.1 mRNA upstream 234214 17643376 ~ 17648252 (+) False scrn3
XM_039818004.1 mRNA downstream 11396 17896012 ~ 17899698 (+) True hoxd4a
XM_039818002.1 mRNA downstream 16463 17901079 ~ 17909596 (+) True hoxd3a
XM_039818003.1 mRNA downstream 16463 17901079 ~ 17909596 (+) False hoxd3a
XM_039817799.1 mRNA downstream 126141 18010757 ~ 18017413 (+) True hnrnpa3
XM_039817798.1 mRNA downstream 126141 18010757 ~ 18015244 (+) False hnrnpa3
XR_005640989.1 other upstream 1740 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other upstream 1740 17860753 ~ 17880726 (+) False hoxd10a
XR_005640988.1 other upstream 1740 17860872 ~ 17880726 (+) False hoxd10a
XR_005641003.1 other upstream 704826 17127881 ~ 17177640 (+) False myo3b
TU167490 other upstream 882934 16997781 ~ 16999532 (+) False col28a2a
XR_005640963.1 other downstream 126141 18010757 ~ 18017413 (+) False hnrnpa3
TU168229 other downstream 818412 18703028 ~ 18704528 (+) True G125079
XR_005640959.1 other downstream 2290212 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other downstream 2290212 20174828 ~ 20265148 (+) False myo16
TU168970 other downstream 2607562 20492178 ~ 20521274 (+) False G125627

Expression Profile