RNA id: XM_039818046.1


Basic Information

Item Value
RNA id XM_039818046.1
length 5965
RNA type mRNA
GC content 0.48
exon number 43
gene id nalcn
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 23398523 ~ 23493338 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

aTCCACTCTCTGTATAGCACGGCAAGTCCCAGCATGCTAAAGAGGAAACAGAGTTCACGGGTCGAGGCCCAGCCCATGACCGACTTTGGGCCGGATGAGACCCTCGCAGACAGCGCTGACATCTTCTGGATCAACAAACCATGGGTGCACTCCCTGCTGCGGGCCTGTGCCATCATCAGTgtcatctctgtgtgtatgaacaCCCCCAAGACATTTGAGCATTACCCTCCGTTGCAGTATGTGACCTTCACGCTGGACACACTGCTCATGTTCCTATACACTGCAGAGATGATTGCCAAGATGCACATCAGAGGAATCATCAAGGGGGATAACTCCTATGTGAAGGATCGCTGGTGTATGTTTGATGGATTCATGGTGTTTTTCATCTGGGTGTCCCTGGTGCTGCAGgTGTTTGAAATAGCAGAGCTTGTGGATCAGATGTCTCCATGGGGAATGTTGAGAATCCCCCGAGCGCTCATTATGATCCGGGCCTTCAGGATCTACTTCCGCTTCGAGCTTCCTCGCTCGCGCATCACCAACATACTGAAGCGATCTGGGGAACAGATCTGGAGTGTCTCCATCTTCCTGCTGTTTTTTCTCCTGCTCTATGGAATTCTGGGTGTTCAAATGTTTGGAACGTTCAACCACCACTGTGTTACTAATGATACACAGAGAGGTAATGTGACATGGAACAGCTTGGCCATCCCAGACACCCATTGTTCCCCTGATGGGGAGGGCTACCAGTGTCCTCATGGCTTCAAATGTGAGGACCTCGAAGACCTGGGCCTCAGCCGACAGGAGCTCGGTTATAGTGGCTTCAATGAACTAGGTACGAGTATCTTTACTGTGTATGAGGCTGCATCACAGGAGGGTTGGGTGTTCCTCATGTACAGAGCCATTGACAGCTTCCCTCGCTGGCGCTCCTACTTCTACTTTATAACTCTCATTTTCTTCTTGGCATGGCTTGTCAAGAATGTGTTCATTGCAGTCATCATCGAGACATTTGCTGAGATAAGAGTGCAATTTCAGCAGATGTGGGGGTCAAGGAGCAGTACCACATCTACTGCTACAACACAGATGTTTCATGAAGACTCTGCTGGGGGGTGGCAGCTTGTAGCTGTGGACGTCAACAAACCACATGGCCGAGCGCCTGCCTGCCTCCAGCAACTGATGCGGTCCTCTGTGTTCCACATGTTCATCTTGAGCATGGTCGCTGTGGACGTCATCGTTGCTGCTAGCAACTATTATAAAGGCGAGAACTACCGCAGGCACTATGATGAGTTCTACCTGGCAGAGGTTGCCTTTACTGTGTTATTTGACCTGGAAGCTCTTCTGAAAATCTGGTGTCTGGGCTTTACCGGCTACATCAGCTCCTCTCTGCACAAGTTTGAATCTCTCCTGGTGGTGGGCACCACGCTGCACATCTACCCTGACCTCTACCACTCTCAGTTCACCTACTTTCAGGTGCTACGTGTGGTGCGTTTGATTAAGATTTCCCCAGCTCTGGAGGACTTTGTATATAAGATATTTGGTCCAGGTAAAAAACTAGGCAGCCTGGTGGTGTTCACAGCCAGCCTCCTCATCGTCATGTCGGCCATCAGCCTGCAGATGTTCTGCTTTGTGGAGGAGCTAGACCGTTTCACCACATTCCCCAGGGCATTCATGTCCATGTTCCAGATCCTAACCCAGGAGGGCTGGGTAGATGTCATGGACCAGACTCTGGTGGCTGTAGGTCATATGTGGGCTCCGGTAGTAGCCATTTACTTCATCCTCTACCATCTGTTTGCTACTCTGATTCTGCTCAGTCTTTTTGTGGCTGTAATCTTGGACAATCTGGAGTTGGATGAAGACTTGAAAAAGCTCAAACAGCTCAAGCAAAGCGAAGCCAATGCTGACACCAAAGAGAAGCTTCCTCTACGACTCAGGATCTTTGAGAAGTTCCCCAACAGACCTCAGATGGTGAAAATCTCCAAGCTCCCATCTGATTTCACCGTGCCCAGGATCAGGGAGAGTTTTATGAAGCAGTTCATCGATCGTCAGCAGCAGGACACCAGTTGTTTGTTCCGGCGTCTCCCCTCCGCATCATCCTCCTCCTGTGACCACTCCAAACGCTCAGCCATTGAAGACAACAAGTATATCGACCAAAAGCTTCGCAGGTCAATATTTAGTATCCGAGCTCGTAACCTTCTGGAAAAAGAAACTACTATCAATAAAATACTGCGGGCTTGTACCACACAGCGTATGCTAAGTGGATCCTTTGAAGGCCAGCCAGCCAAAGAACGCTCCATACTCAGCGTCCAGCATCACATACGGCAGGAGCGCAGATCTCTGAGACATGGTTCCACTAGTCAGAGGATCAGCAGAGGGAAGTCGCTGGAGACACTCACCCAGGATCATTCCAGTACGGTACGCTATCGTAACgcacagagagaggacagtgaGATTAAGATGATCcaagaaaagaaagaacaagCAGAGATGAAAAGAAAAGTGCAGGAGGAGGAGTTGAGAGAAAATCATCCTTACTTTGATAAGCCTCTCTTCATTGTGGGGCGGGAGCACCGCTTCAGGAACTTTTGCAGGATGATTGTTCGAGCTCGCTTCAATGCATCCAAAACTGACCCCATAACAGGAGCAGTGAAGAACACCAAATACCACCAGCTGTACGATCTCCTGGGCCTCGTCACCTATTTGGACTGGGTTATGATTGTAGTAACCATCTGCTCCTGCATCTCCATGATGTTTGAATCACCCTTCACCAGGGTCATGCATGCCCCCACACTGCAGATCGGGGAGTATGTGTTTGTGATCTTTATGAGCATTGAGCTCAACCTGAAGATCATGGCCGACGGTCTGTTCTTCACCCCCACAGCTGTCATCAGAGACTTCGGAGGAGTCATGGACATCTTCATCTATCTTGTGAGTCTGATATTCCTGTGCTGGCTGCCTCCTGACGTCCCTCCTGAGTCTGGGGCTCAGCTGCTGATGAtgctgcgctgcctgcgtccgCTCAGGATCTTCAAGCTGGTTCCCCAGATGAGGAAGGTGGTGCGGGAGGTTCTCAAAGGATTCAAGGAGATTTTCCTGGTTTCCATTCTGCTCCTCACTCTAATGCTCGTGTTTGCAAGCTTCGGAGTTCAACTGTTTGCCGGAAAGCTTGCCAAGTGCAACGACCCCCATATCATTAAACGGGACGATTGTCACGGTATTTTCCGAATAAATGTCAGCGTTTCCAAGAACCTCAACTTGAAACTGAAGGCTGGAGAGAAGAAGCCTGGTTTCTGGGTACCAAGAGTCTGGGCCAACCCTCGTAATTTTAACTTTGACAATGTGGGAAATGCCATGTTGGCTTTGTTTGAAGTGCTGTCCCTCAAAGGCTGGGTGGAGGTCCGAGATGTCATTATTCACCGCGTAGGACCGATCCATGGCATCTACATCcatgtctttgtgtttctgGGGTGCATGATTGGACTCACCCTGTTTGTCGGCGTTGTTATTGCAAACTTCAACGAGAACAAGGGCACTGCTCTCCTAACAGTGGACCAGAGGAGATGGGAGGATCTGAAGAGTCGACTGAAAATAGCCCAGCCTCTTCACCTGCCCCCTCGCCCAGAAAACGGGGGTTTCCGGGCTAAGATGTATGACATTACTCAACATCCCTTCTTCAAACGGGGCATTGCTGTGCTGGTGCTGGCACAGTCTGTGCTGCTCTCAGTCAAGTGGGACGTAGGATATCAAGCAACATTTCCTCTTGCCACCATGTCAGTAGTCTTCACCTTTATATTTGTACTGGAGGTGACCATGAAGTTGATAGCCATGTCTCCAGCGGGTTACTGGCAGAGCAGAAGGAATCGCTATGACCTACTGGTCACATCATTGGGTGTCATCTGGATAGTCCTGCACTTTTCCTTACTGAATGCATATACCTACATGATGGGCACATGTGTGATTGTCTTCAGATTCTTTACAATATGTGGGAAGCATGTGACTCTGAAGATGCTACTGTTGACTGTGGTAGTCAGCATGTACAAGAGCTTCTTCATCATTGTGGGCAtgttcctccttctcctctgctACGCATTTGCTGGCGTTGTTCTCTTTGGAACTGTCAAATATGGAGAGAACATCAACCGGCATGCCAACTTCTCCACAGCAGGCAAGGCTATCACCGTTCTCTTCCGTATTGTCACAGGGGAGGATTGGAATAAAATCATGCATGACTGCATGGTGCAGGCCCCATTCTGTACCCCGGATAAACATCGCTACTGGGAGACTGACTGTGGCAACTATGCTGGAGCACTTATCTACTTCTGCTCTTTTTATGTCATTATAGCTTACATCATGCTCAACCTACTCGTAGCCATCATCGTGGAGAACTTCTCTCTGTTCTACTCCACCGAGGAGGACCAGCTGCTGAGCTATAATGACCTGCGGCACTTCCAAATCATCTGGAACATGGTGGATGACAAACGGGAGGGTGTGATCCCCACATCCAGGGTGAAGTTCCTGCTTCGTCTCCTCCGAGGCAGGCTGGAGGTGGACCTGGACAAAGACAAGTTGCTGTTTAAACACATGTGCTATGAGATGGAGCGACTGCACAGTGGAGGGGATGTGACCTTCCATGATGTGCTCAGCATGCTGTCATATCGCTCAGTGGACATTAGAAAGTCTCTCCAGCTGGAGGAGCTGTTGGCCAGGGAACAGTTGGAGTACACCATTGAAGAAGAGGTTGCCAAACAGACCATACGCATGTGGCTCAAGAAATGCCTCAAACGCATCCGGGCGaagcagcagcagtcgTGTAGCATCATCCACAGCCTGAGAGAAAGCCAGCAGCAGGAGTTGAGCCGCTTCCTTAACCCCCCCAGCATAGAGACCACCTTGCCAAGTGAAGACCACAATGCTAACAACCCAGACAACCCTTCGCAGCCTGAGATGAGTGGTCTCCAGCAGCTACTCAGCCCTACATTGTCAGACAGAGGAGGCTACAGGCAGGACTCTTCAGACCTGGGGAGACCACAGAGGAAGCTGGGACAGTGGCGGCTGCCTGCAGGTCGCACAAGTGTCAAGTCCATAGTGTGTAAGATAAACCCTGTCAACGATGAGGCTTCTTCGGGGTCAGAGGTGAAGAAGTGGTGGACCCGTCAGCTGACTGTGGAGAGCGACGAGAGCGGCGACGACCTCATCGACATTTAGAGAATGAGGCGCTGCCTTCACAGATGAGCTGGGAAGCTTGCTGTCTGACTCAAGTTGTTTCAACTTGCTCTCCCCTGatcaataaaaacaatgctTTTTCTAATCTTTTTTTATCCAGGTTCAGAACTCTTCTGAAAGTATTGCAGGCTGTGCGTGCAGGTTATCGATGATAGTGTCGTTGAGCAGCCATTTTGACATGCAGTCACGATTTCAAACCTCTGGGATAGGTATTACTTTTCCTTTGTGATTTCCGCTCATTACGATTGCTTGAGTTTTTCTATGCAGGCACATAGTATGGTGTTAAGGCAGACTGTGTGACACGAAAGGACATGTTGCATTCATGAAACAAACCAAGAAGCTGCTGTTCTATATGTTTTCCACTGTTCTGCTGTTTCAACTTTTGAAACCGGTAATTACATTATTGGTGCAGCTAAAATAAGTTGTGATGTCCCTTTATGTCAATGTTTTGTTCTTCTGTTTTAGTCCATGTTTCTGATCATGTCTCTTCTGGAGTTCAGTATCAATCGTATAAATATTGATTTCCTTAGAGTCACTTTATACTTAAACCAGCCCTCTTGTTCTTGTTGGTGGAACAAGCAAATAAAGCAACTTTTAGATTTTTGACTGTGAATGTAATTAACAGTCAAATCTatcttgtgtatttgtgtggagttaaaacatgaaatattttgtaaattattatatatCCTTAGCTTTATCAAATATTCAATTATTCTAATAAAGGCCTGCATAGGCATTTATGAGCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169932 lncRNA downstream 627603 22770712 ~ 22770920 (-) True G126353
TU169915 lncRNA downstream 660686 22733568 ~ 22737837 (-) True G126341
TU169906 lncRNA downstream 674932 22723126 ~ 22723591 (-) True G126334
TU169868 lncRNA downstream 741830 22655579 ~ 22656693 (-) False scel
TU170176 lncRNA upstream 22071 23511542 ~ 23518025 (-) True G126486
TU170181 lncRNA upstream 44224 23533695 ~ 23535597 (-) True G126489
TU170207 lncRNA upstream 193323 23682794 ~ 23690101 (-) True G126510
TU170224 lncRNA upstream 209873 23699344 ~ 23700062 (-) True G126526
TU170229 lncRNA upstream 213799 23703270 ~ 23704020 (-) True G126528
XM_039818690.1 mRNA downstream 27092 23360478 ~ 23371431 (-) True tmtc4
XM_039819169.1 mRNA downstream 159378 23235022 ~ 23239145 (-) True zic5
XM_039818758.1 mRNA downstream 257840 23139020 ~ 23140683 (-) True si:ch211-184m13.4
XM_039818657.1 mRNA downstream 274622 23120451 ~ 23123901 (-) True gpr183a
XM_039818658.1 mRNA downstream 281114 23110033 ~ 23117409 (-) False gpr18
XM_039818108.1 mRNA upstream 49267 23538738 ~ 23649615 (-) False fgf14
XM_039818107.1 mRNA upstream 49267 23538738 ~ 23649614 (-) False fgf14
XM_039818110.1 mRNA upstream 49267 23538738 ~ 23631949 (-) False fgf14
XM_039818109.1 mRNA upstream 49267 23538738 ~ 23584803 (-) True fgf14
XM_039819156.1 mRNA upstream 327541 23817012 ~ 23825813 (-) False shox
TU170105 other downstream 283628 23112676 ~ 23114895 (-) False gpr18
TU170057 other downstream 430634 22965339 ~ 22967889 (-) False klf5b
TU170058 other downstream 431669 22965339 ~ 22966854 (-) False klf5b
TU170071 other downstream 433250 22962624 ~ 22965273 (-) False klf5b
TU169814 other downstream 769424 22625181 ~ 22629099 (-) False katnal1
TU170320 other upstream 465435 23954906 ~ 23957083 (-) False si:ch211-218d20.15
TU170321 other upstream 465435 23954906 ~ 23957083 (-) False si:ch211-218d20.15
unassigned_transcript_608 other upstream 1377257 24866728 ~ 24866838 (-) True trnal-caa_11
XR_005641106.1 other upstream 1392626 24882097 ~ 24882215 (-) True LOC120570683
XR_005641099.1 other upstream 1393732 24883203 ~ 24883321 (-) True LOC120570672

Expression Profile