RNA id: XM_039818070.1


Basic Information

Item Value
RNA id XM_039818070.1
length 1611
RNA type mRNA
GC content 0.48
exon number 9
gene id nepro
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 10921003 ~ 10925563 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTTTTTGTAGGGAAGCATCATCCGTGGGAAGCATGGCAGGAGAACCGTGGAACAGGATGAACGTGTGAAAGCCCTGATTGTGGAAAATGACAAGGTGCTTAGGCTAATTCGGAGTGAGATTCTTCAAACCGAGGTACGAGTTCTCTACGAGCTGCTGTACTTCCTAAATAACAGCTTCAGAGGCAACAAGACGTTCAAAGGTTTAAAGCAGGTTGAACAATGCATAAACAGGCTGAAGAGCATGAAACTTGATTTTGCTCTTCAGGAGCTGACGGACCTGTGTCCCAAAAGAATTCAAAGaggacTGAGCATCAAGGCTGGTGAGTGTGATGTCCCCAGTCAACCCATGCTGGAGTGGCTCTGTCTCAAAGTGCTTGGAGCCGCCCAGCTGATGAGCTGCACATTGAATCGCTGCAGCAGAGCTTTCACACTGTCAATGCAGCAGATGAAATGGGAGGAGTTTATTATCTTGAATATGGTGATAACGAGCATGGTCAGTCGTCTCTGGGTGATTGCCCGTGGTATCCTGGTCAGCCTGTCCACTCTGTATCAGCAGCTCCTGGAGCTCCTGAGAGAAGTAGCCAACGCCCAGCCCATGCCCTTCCTCACAGACTTCTCCCTGCCGGCAGATATGGCTCAGTTCCTGGCTCCTTCTGATGCCCGTTTACTGACCAAAAAGCCAGCACGCGGTCCCCTTGCCAGAGGTCACAAGTATAAGCAGCAGGGGAAGAAGAAATCTTCTGTTAAAGTGAAGAACCAGGGAGAGGCAAGGGAGGTTAAAGAAGACCTGGGTGTTGCTGTTGAAAGAGttatTGGTCTTGACGCTGACATGAAGCCTTTTCTCAAGGTTTTCAGGGACTTCTCTGAGGGCAAATCCTtcccacagaaaacacacaaggcCGACAGGAAACGGAGGTTCAAGAAACAAGTGAGAGAGGCTACTACTTTCACAGACATGGCGGCCCATCTGGAAGAAATGATCCTGTGGTGCAAGTCCCAGAAGATGGCAAAGGAAAAACGTCTTCTAAGCTTCTTGCATTTAAAGTGCCAAAGGATGAAATGCTTAGAGGCAGCAGGTTACAACGTTCAGAGGAGGTTGCGGACCTTCAGACAGGAAGCTCGCTGGGCTTCATCTCCTCACGGCTCGGTGCCGACAACCTGCCGGGCTTCTGCTGCAACCAGGAGACATGCTCGCCTGACAACTCGTTGGCAGACGCTCAGAAGTCGATTTAAGTCTTCAACGGGTGTGAAAAAGAAACTGCTGAAGAGACAAAGTGGGAGGACGGAGTTATCAGTGTCCGGACTGTCAGGGGACGACCAAAGAACCCGGACTACAAACGAGGCGACATCATCTCAGACCACCGGCTGGGACCGCCAGGATGACATAGATGATATATTTGCCTCTGTAGGTTTGTGACACTTTGGAATTGAACACATCCAATGAAACAACTTACTGAATGTAGCTGAGCTCAGTATTTGATAGATTCCTCTGTTTTGAAAGGACATTTGATGTGTAATTATAACTGATGGTTGGTCattgtatgaatgaatgaattaatgaatgaagTGCTAAACAGCAGCAGTTAattttaaagcagaaagtaACCAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165637 lncRNA downstream 45923 10822765 ~ 10875080 (-) True G123160
TU165617 lncRNA downstream 138495 10709001 ~ 10782508 (-) True G123142
TU165620 lncRNA downstream 157087 10757843 ~ 10763916 (-) True G123145
TU165606 lncRNA downstream 248325 10672309 ~ 10672678 (-) True G123131
TU165605 lncRNA downstream 252369 10668347 ~ 10668634 (-) True G123130
TU165736 lncRNA upstream 14499 10940053 ~ 10994920 (-) False stxbp5l
TU165753 lncRNA upstream 211055 11136609 ~ 11137071 (-) True G123232
TU165813 lncRNA upstream 355134 11280688 ~ 11281039 (-) False thsd7ba
TU165820 lncRNA upstream 608570 11534124 ~ 11534342 (-) True G123286
XR_005640937.1 lncRNA upstream 615273 11540827 ~ 11544518 (-) True LOC120569662
XM_039818071.1 mRNA downstream 5601 10901845 ~ 10915402 (-) True ralba
XM_039818473.1 mRNA downstream 42034 10874099 ~ 10878969 (-) True LOC120570237
XM_039818472.1 mRNA downstream 42034 10875132 ~ 10878969 (-) False LOC120570237
XM_039818286.1 mRNA downstream 159682 10759182 ~ 10761321 (-) True LOC120570057
XM_039817187.1 mRNA downstream 721785 10143283 ~ 10199218 (-) False myo1b
XM_039817219.1 mRNA upstream 1004 10926558 ~ 10929023 (-) True tex30
XM_039818849.1 mRNA upstream 4384 10929938 ~ 10938901 (-) True poglut2
XM_039817823.1 mRNA upstream 14915 10940469 ~ 11094619 (-) False stxbp5l
XM_039817821.1 mRNA upstream 14915 10940469 ~ 11094619 (-) False stxbp5l
XM_039817817.1 mRNA upstream 14915 10940469 ~ 11094619 (-) False stxbp5l
TU165255 other downstream 1920880 8999462 ~ 9000123 (-) True G122878
XR_005640909.1 other downstream 2117913 8798035 ~ 8803090 (-) False ccnt2a
TU164950 other downstream 3603410 7181945 ~ 7317593 (-) False tmeff2a
unassigned_transcript_606 other downstream 3741845 7179077 ~ 7179158 (-) True trnas-aga_9
unassigned_transcript_605 other downstream 3776795 7144127 ~ 7144208 (-) True trnas-cga_8
TU166096 other upstream 1693799 12619353 ~ 12619815 (-) True G123481
TU166598 other upstream 3859007 14784561 ~ 14794497 (-) True G123886
TU166600 other upstream 3859007 14784561 ~ 14789906 (-) False G123886
TU166697 other upstream 4058931 14984485 ~ 14993789 (-) True G123960
unassigned_transcript_607 other upstream 4491646 15417200 ~ 15417272 (-) True trnak-uuu_17

Expression Profile