RNA id: XM_039818088.1


Basic Information

Item Value
RNA id XM_039818088.1
length 5264
RNA type mRNA
GC content 0.56
exon number 40
gene id dip2a
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 14996489 ~ 15078402 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGCCCgggctgctgttgttgctatgaTGCAATGGCGACTGCGCCGTGGGAAGCGAGTGAGGAGTTGAATGAGTTCCCTTCACAGTTGAAGTGAAGCAGCCGCCGACAGACAGGACACCGTCAATGCGGAGGGACAGACAGCAGGCAGGGAGACACTGGCAGGGCCCTGTCCTACCACACTACATGGAAACACACAGCCAGATATGTCTGCTAGCCTCACAGCTAGCCGTGTCATGACGGTTGGAGAGATTTCTCACACATCTGTACGACGTTGCAGCGAGACGAGCACCAACACCCTATTTGCCCTCCTTAGACGATACCAAGTGAGGAGtggctgttgtttttcttttcttttttaaatttatggTCGCATTGTCCTCCTCACCGGCGACTCGGTGGACGTATTCGTGCTTCTTACCATGGCTGAGAGAACCTCAACCGGGTTGCTAACGATGATGTTGGAGCCCACGCCGGCTGTCGCTATGACCCTGCCGGCGGAGGTCCGGGAGAAGCTGGCggagctggagctggagctCTCTGAAGGGGACATCACTCAGAAGGGCTATGAGAAGAAAAGAGGCAAGCTGTTGGCACCGTACATCCCACAGATACAAGGTGTAGATCCTTCACTGCAAATTGACAACAGAATCCAGGCCTCCTCCCAAGCTGTTCTTCCAGGTTCCAAACACAACAAGTCCCGGGCGGCCAACACCCGGGATGAGCGCTTCAGATCTGATTTGCACACAGAAGCCGTCCAAGCAGCTTTGGCAAAGTACAAGGAAAGGAAGATGCCAATGCCCTCCAAGAGACGATCTGTGTTAGTTCAATCTTCTGTTGAGGCATGCACCCCGCCAGACACCTCCTCAGCGTCGGAAGACGAGGGCTCGCTGCGCCGGCAGGGACGTCTGGCCACCTCCACGCCCTACCAGGGCCACGGCCACCTAGCCGTTGAGCACTGGTTTAACCGTGTCATCCAGGGTTCGTCCACCTCATCCTCCGCGTCATCCACTTCATCCCACCCGGGAGGGAGATCTGtcaccaccaccaacaccacTGCCCACGCAGCCCTCAACGCCAACGCCGCAGCTACCGCACTGGCCGACCTTATGGCACACACCCAGCTAGATAACCACTCAGCGCCCCCCGATGTGACGGGGCTGTCGGAACGCTCCTCGCTTCATGCGGAGCGGCCCCAGGTGGCCTCGGTGCGAGGCGTTTCCCGGGGCTACATCCACCACACCAGCGTCATGGAGACTGGAGATGGCTGTGAGTGGAGAAGTGAAGGATCCCTCAGTTTAATGGATGGTGTACCAGTCAACAGTCGCGTCTCCTCCAAAATCCAGCAGCTGCTCAACACTCTGAAGAGACCAAAACGACCGCCATTACGAGAGTTCTTTGTGGACGACTTTGAGGAGCTTTTGGATGTCCAGCATATAGATCCCAACCAGCCAAAGCCAGAAGGCCAGCACACAAGTCCCCTGGAAGGAGAGCCTCTCGGGGTGGTCAACAACTGGCCTCCCTCCTTGCCAGCAGCCTTACAACGATGGGGCAGCACTCAGCCCAAGAGCCCCTGTCTGACGGCACTCGACAATGCTGGCAAGCCTGTCTACACACTCACCTATGGTAAACTATGGACCCGCAGTCAGAAACTGGCATACACTCTTCTTAACAAGCTGAGCACCAGAAATGAGCCTTTGCTCATGCCCGGAGACAGAGTTGCACTTGTTTTCCCCAACAATGACCCAGTGATGTTCATGGTGGCCTTCTACGGCTGTCTCCTGGCAGAGCTGGTACCTGTGCCTATCGAAGTGCCACTTACCAGAAAGGATGCAGGAAGTCAACAGATTGGCTTTCTGTTGGGCAGCTGTGGCGTCACATTGGCACTAACCACCGATGCTTGTCAGAAAGGCTTGCCCAAAGCACAAACGGGGGAGGTAGCCACTTTCAAAGGCTGGCCGCGGTTGCTGTGGTTTGTGACAGATGGAAAACATGTTGTGAAGCCTCCGAAAGACTGGCATCCCCCAATACGGGAAGCCAGTAATGACATAGCCTACATTGAGTATAAAACCAGCAAGGAGGGCAGCACCATGGGGATCACAGTGTCCCATTCAgccatgctggctcactgtcacgcCCTTACACAGGCCTGCGGCTACACTGAAGCCGAGACCATAACCAACGTCCTGGACTTCAAGAGAGAAGCAGGATTATGGCATGGTGTTCTTACTAGTGTCATGAATCGGATGCACGTGATTAGCATTCCTTACTCCCTGATGAAAGTCAACCCCCTCTCCTGGATACAGAAGGTGCACACATACAAAGCGCGGGTTGCAGTGGTGAAGTCGAGGGACATGCACTGGTCTCTGCTTGCCCAGAGAGACCAGAGAGACATCAGCCTGAGCTCGCTGCGCATGCTCATCGTAGCCGACGGAGCTAACCCATGGTCGATATCCTCCTGCGATGCCTTCCTTAACGTGTTTCAGGCACGTGGGCTGCGACCTGAGGTGATCTGTCCATGTGCCAGCTCTTCAGAAGCCATGACTGTCGCCATCCGCAGACCTCCAGAAATGGGTGTTCCTCCTCCTGGGAAGGCGGTGCTGTCTATGGGTGGGCTGAGCCACAGCGTGATCCGTGTGGACACAGAGGAGAAACTCTCTGTCCTCACAGTGCAGGATGTGGGACAGGTCATGCCTGGAGCTCTGGTTTGTGTGGTGCGGGTGGAGGGGACACCCTATCTCTGTCAGACAGACGAGGTTGGAGAGATCTGCGTCAACTCAGGTAGCACGGGTGTAGCTTACTACGGCCTCCCGGGCATGACCAAGAACATCTTCGAGACCATTCCAGTAACATCATCTGGGATTCCCGTCAGCGACAGACCATTTACCAGGACCTCACTGCTGGGCTTTGTGGGGCCCGACAGCCTTGTGTTTGTTGTGGGGAAGATGGATGGGCTGATGGTGGTCAGTGGGCGGAGACACAATGCCGATGATGTGGTTGCCACAGCACTGGCAGTGGAGCCCATGAAGTTTGTGTACAGGGGGAGGATAGCagtgttttctttgtctgtgcTGCATGACGAGAGGATCGTTGTTGTAGCAGAGCAGAGGCCAGACGCCTCCGAGGAAGACAGCTTCCAGTGGATGAGCCGCGTCCTTCAGGCCATAGACAGCATCCACCAGGTTGGGGTGTACTGCCTGGCTCTGGTGCCTGCCAACACACTTCCCAAGGCTCCACTGGGCGGCATTCATATATCTGAGACCAAACAGCGCTTCCTGGAGGGTGCCTTGCACCCATGCAACGTCCTCATGTGCCCTCACACATGTGTCACCAACCTGCCCAAGCCAAGACAAAAACAGCCAGAGGTCGGTCCTGCTTCTATGATAGTGGGCAACCTGGTGGCAGGCAAGAGGATTGCACAGGCCTGTGGGAGAGACGTGGCACAGCTAGAGGACAATGACCAGTTCCTGTACATACAGGATGTGCTGCAATGGAGAGCTCAGGCCACTCCAGACCACCCTCTGTTCCTTGTTCTCAATGCTAAGGGCACGGTGGCTAGTACAGCCTCCTGTCTGCAGCTGCACAAGCGGGCAGAGCGGGTGGCTACAGCACTGATGGGTCGCCTCAACACTGGAGACCACGTGGCACTCGTCTACCCACCAGGAATCGACCTGATTGCTACCTTCTATGGCTGCCTGTATGCTGGCTGTGTTCCAGTCACTGTCAGACCCCCGCATCCCCAGAACCTGGCGACCACCCTGCCCACCGTTAAGATGATTGTTGAGGTCAGTAAGTCGGTGTGTATCCTGACCACTCAAGCAATAATGAAGCTCCTGAAATCCAaagaggctgctgctgctgtggacaCCAAGAGCTGGCCTATGGTGCTGGACACAGATGACCTCCCCAGGAAGAAGAGTCCCCAGATGTACAAGCCCCCGACCCCAGAGATGTTAGCTTACCTGGACTTCAGCGTGTCCACAACAGGCATCTTAGCAGGAGTCAAAATGTCTCACGCTGCCACCAGTGCCTTGTGTCGCTCCATCAAACTGCAGTGTGAGCTCTACCCTTCCCGGCAGATCGCCATCTGTCTGGACCCCTACTGCGGTCTGGGCTTCGCTCTCTGGTGCCTGTGCAGTGTGTACTCAGGCCACCAGTCAATCCTGGTTCCCCCTCTGGAGCTGGAGAGCAACGCGTCTCTGTGGCTTGCGGCAGTCAGCCAATACAAAGTGCGCGTCACCTTCTGCTCGTATTCAGTCATGGAGATGTGCACCAAGGGCTTGGGTTCACAGACAGAGGCACTGCGGTTGCGAAATGTGAACCTGTCTTGCGTGCGTACGTGCATGGTGGTAGCAGAGGAGAGGCCCCGCATAGCACTCACTCAGTCCTTCTCAAAGATCTTTAAGGACTTGGGGCTTTCATCACGCGCCGTCAGCACCACCTTCGGCTGTAGGGTGAATGTGGCGATATGTTTGCAGCCCAACAGGTTAGGGAAACTGGCTGAGCAGgGCACAGCCGGACCAGACCCTACTACTGTTTATGTGGACATGAGAGCTCTACGACATGATAGGGTTCGCCTGGTAGAGAGAGGGTCGCCACACAGCTTGCCACTGATGGAGTCTGGGAAGATCCTTCCAGGAGTGAAGGTGATCATTGCCAACACAGAAACTAAAGGACCCTTGGGAGACTCCCATCTAGGAGAGGTCTGGGTGAGCAGTCCTCACAATGCCACAGGTTACTACACAGTTTACGGTGAGGAGGCGCTACATGCTGACCACTTCAACACCAAGCTCAGCTTCGGCGACACCCAGACTGTCTGGGCGAGGACGGGCTACCTGGGCTTCCTGCGGCGCACGGACCTGACTGATGCCAGTGGAGAGCGTCATGACGCCCTCTATGTAGTGGGCTCCCTTGATGAGACTCTGGAGTTGAGGGGAATGAGGTATCACCCAATTGACATCGAGACCTCTGTTATCCGTTCTCACAAGAGCATAGCTGAATGtgCGGTGTTCACTTGGACCAACCTGCTGGTGGTGGTTGTGGAGCTGGAGGGCTCGGAGCAGGAGGCCCTGGACCTGGTGGCCCTGGTCACCAACGTGGTGCTGGAGGAGCACTACCTCATCgtaggggtggtggtggtggtcgACCCCGGCGTCATCCCCATCAACTCCAGAGGGGAGAAGCAACGCATGCACCTCAGAGACGGATTCCTGGCCGACCAGCTGGACCCCATATATGTGGCTTACAACATGTGAGCGCTGCCCCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166696 lncRNA downstream 12074 14984014 ~ 14984415 (-) True G123959
TU166677 lncRNA downstream 56915 14939331 ~ 14939574 (-) True G123948
TU166611 lncRNA downstream 192157 14803514 ~ 14804332 (-) True G123889
TU166584 lncRNA downstream 266109 14726756 ~ 14730380 (-) True G123878
TU166768 lncRNA upstream 37329 15115730 ~ 15123454 (-) True G124000
TU166770 lncRNA upstream 37793 15116194 ~ 15123945 (-) True G124001
TU166795 lncRNA upstream 99917 15178318 ~ 15196218 (-) True G124014
TU166949 lncRNA upstream 396857 15475258 ~ 15476148 (-) True G124136
TU166959 lncRNA upstream 424347 15502748 ~ 15504712 (-) True G124146
XM_039818789.1 mRNA downstream 22581 14969526 ~ 14973908 (-) True LOC120570440
XM_039817871.1 mRNA downstream 39711 14943125 ~ 14956778 (-) False si:dkey-67c22.2
XM_039817870.1 mRNA downstream 41004 14943125 ~ 14955485 (-) True si:dkey-67c22.2
XM_039818795.1 mRNA downstream 75840 14905104 ~ 14920649 (-) False LOC120570445
XM_039818796.1 mRNA downstream 78199 14903356 ~ 14918290 (-) True LOC120570445
XM_039817585.1 mRNA upstream 2043 15080444 ~ 15085429 (-) False LOC120569627
XM_039817584.1 mRNA upstream 2043 15080444 ~ 15085429 (-) True LOC120569627
XM_039817722.1 mRNA upstream 129085 15207486 ~ 15211365 (-) False LOC120569703
XM_039817721.1 mRNA upstream 129085 15207486 ~ 15211365 (-) True LOC120569703
XM_039817726.1 mRNA upstream 145559 15223960 ~ 15236351 (-) True LOC120569706
TU166697 other downstream 2700 14984485 ~ 14993789 (-) True G123960
TU166598 other downstream 201992 14784561 ~ 14794497 (-) True G123886
TU166600 other downstream 206583 14784561 ~ 14789906 (-) False G123886
TU166096 other downstream 2376674 12619353 ~ 12619815 (-) True G123481
TU165255 other downstream 5996366 8999462 ~ 9000123 (-) True G122878
unassigned_transcript_607 other upstream 338799 15417200 ~ 15417272 (-) True trnak-uuu_17
TU167157 other upstream 1020877 16099278 ~ 16101593 (-) True G124303
TU167228 other upstream 1300208 16378609 ~ 16380765 (-) False gcgb
TU168094 other upstream 3034709 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 3035109 18113510 ~ 18115089 (-) False LOC120569287