RNA id: XM_039818102.1


Basic Information

Item Value
RNA id XM_039818102.1
length 5668
RNA type mRNA
GC content 0.56
exon number 20
gene id raph1a
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 28804244 ~ 28892620 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCCTCTAACTTGACGCTGGTGTTCGCGCTATTGGGATTCAGTGTGGCAGCAGGGGAAATCTGGGATATCTGGGAAAGGGGAGTCGGTGAAAACCGGGACTAAACCGGCAGAAATCCCGACGAATCCTTGACCGTCACACCGCGGGGGTTTCCCACCGGACACTTCTCCTCCGTCTCCCCGTCGGTTGGCTGCGATTTTCCTCCCAGAAATCTCCCTGGATCCGCACAggTGATTGAAGTCCTCCTCTCTGTTCTGTGTTGGAGCTGGACTGAGCAGTGTTAGTAGACCAAAGATGGATCAGTTgtcagacgaggaggtggaggtcagggatgaggaggaggaagaggaggacagcGATAAGGACGACCAGGACCTGGATAAGATGTTTGGAGCCTGGCTGGGAGAGCTGGACAAACTCACGCAGGTACACAAAAGTCTGGATGATGGTCGCCCGGAGCAACCGCCTCAGCAGGAAGCTCCCCTCAGACAAGAGACCAACATGGCCAACTTCTCCTACAGATTCTCCATCTACAACATCAACGaGGCGTTGAACCAGGGGGAGAACGTGGACCTTGACGCTCTCATGGCGGATCTCTGCTCGATCGAACAGGAACTCAGCACCGTCAACGCAAAACCCAACAGCGCCGGCAGCATGGCTCGCCTGGGGTTGACCGACACCAAGGTCCGTCAGAAGCCTCCAGCAGGGCGCAGTAGCCGGCAGCAGCCAGCAGGGagcagcggcggcggcggcggtaGCAGCAGTAACAGTGTTAGCGGCGGAGGGGGCAGCAGCGGGGcgagcagtagcagcagcagcaccagagCTTCACCTGCTGGCACCATCAGAGCTCCCACCGGGCATCATGGGAGACCAGCACTGGCCTCTAACTTCAGTCTTGACGACATCACTGCCCAGCTGGAGAAGGCGTCTCTCAGTATGGATGAAGCTGCTCGTCAGACCTCCTCACACTCCCTTAGCTCCGCCTCCTGCTATACGTCAGCCACGATGCGCCGACCCGGATCGTCTCAGCGCCAACATCGGCGCACGGGATCAGTCGGCACAGTCAGCGAACACGAGgCGCGTTCAATCGTTCACTCGTCGCGCTCCTCCGTCACCTCGGCATCCGGGGTTTCTGTGAACTCTGCCTCGTCCATGGACTCGCTGGACAGCGTTCTTCGCTCGAATGAATCAGACGGCCAGCAGCCTTCAGTTATGCCCTCGGCTGAAGGAGCCAGTCAAAGTCATCCCCATACAGAGcACTCCTATCTGGACAGGGAAACCTCTCTGATTCTGAGAAACATAGCAGGGAAACCTTCCCACCTGCTGACCAAGgaGGAGCAGGCTGCCAAGCTGAAGGCAGAGAATATCCGAGTCGCCCTGGAGAAGATCAAGGAGGCCCAGGTTAAAAAGTTGGTGATACGCGTTCATTTGTCAGACGAGAGCTCAAAGACCATGATGGTGGACGAGAGACAGACGGTCAGACAGGTTTTGGACAGTTTGTTGGAGAAATCTCACTGTGGTTACAGTCCAGACTGGTCACTGGTGGAAACCATCAACGAGCTGCAGATGGAGCGGATCTTCGAGGATCATGAGAACCTGGTGGAGAACCTGCTAAACTGGACCAGAGACAGCCAGAACCTCCTGATGTTCACTGAACGCATCGAGAAGTATGCTGTCTTCAAAAACCCCCAGAACTATTTGTTGGGGCGCAAGGAGACATGTGAGATGGCTGAAAGAAACAAAGAAGCTCTGTTAGAGGAGTGTTTTGGCGGCAGCTCAGTGTCTGTCCCCGAGATGGAGGGAGTGTTGTGGCTGAAAGAGGACGGGAAGAAGTCGTGGAAGAAACGCTACTTCCTGCTGAGGGCTTCTGGCATCTACTATGTTCCTAAGGGAAAGGCCAAGgcGTCCAGAGACCTGGTGTGTTTCCTCCAGCTGGATCACGTTAACGTATACCTCGGCCAGGACTACAAGAGCAAGTACAAGGCTCCCACTGACTACTGCATGGTGCTGAAgcACCCTCAGATCCAGAAGAAGTCTCAGTACATCAAGTACCTCTGCTGTGACGATGTCAGAACCCTCCAACAGTGGATCCACAGTATTCGAATCGCCAAGtATGGGAAGCAGCTGTACATCAACTTCCAGGAGGCAATGAGGAGGACAGAGGCGGCCTACGATTggtcctccctctcttcttcctccatcAAGTCAGGATCCAGCTCCTCCAGCCTTCCagAGTCCCAGTCCAACCACTCCAGCCAATCGGACAGTGGCGTTTCagagatgacatcatcaggccACGCCCGCTCGCAGAGTGTCGTCAGCTCCGTCTTCTCCGACGCCTGGAGGAGAGGAACGCAAGGAGAGATGATGAGGATCGACCCTATCAGTAGGCCTATCCCTGTGCGGATACCCTCCCCCCAGCCCACCCGGACCAGCTACACAGAGGGCCTCCTCCCATCTGAGGATTCCTCTCCATCGCCGCCCTCTCCACCTCCGCCTCCTCCCCCCATCGCAAGTGTCGCCCATCAGCCAGCCGCCACCCCCTCATACGTCAAGTACAGCACGCTGGCTCGCCTGCAAAGCCAGAACCAGTCCATGACGCAGCCGACGGGAGCCGCCCCACTTGGCCTTCCCATCCAGTCTGTCAAATCCAACTACAACACCCTCCCAGCTGCTTACAGCTCCTCCCCTCCCCTGCCGccatctcctccccctcctccgccACCTGCGGCACCGGCTCCTGGCTCAGCCATGGCCGCGCTGAAATATGGTCCACCGAGCCCCTCTGCTCTCCCACCGCCACCCCCACTGGAGGAGGACTTGCAGGAGCCCTCCTACCTCCCGCCTCCTCCACCGGAGAGCCCGGAGGCCAACGGGTTGCCTCTGCCTCCCCTTCCCGAGCCCATCCCGGACTCCTGCAGTCACCTCTCAAACAGTGGCCTGCAGCAGTTCCTGGCACACAAGTTTCCACACATGGTGTACGACTTCAGCCCAGAAATGAGTGAGGATAAttctccccctcctccacctccagctGAGCTTTCTCCCCAATCCACCCTGCAAGTTCTCCGGCCTCTGTCCCCCAATGCGCCCCCTCCTGCGCCTCCCAAAACCTTCACCGGTGGTTTCCCGCCTCAAACTGCTCGCAAACCCTCGGGTCCTTCTTCCCTTCCAATTGCCCTCTCGCCTGTGTCACCAACGCAGCCCTATAGCGGCCACGGGCCGGTGAAAAAGCAGCAAAGCTTCTCAACAGGACACTCCCCGAATCAGCCGCCTCCCACCCTGCCAAAGCAGCACAGCCTCTCCTCCAAAAACCTCgccatctctccctcctcctccttttcttcaGTCTCCATCGCGGCCGCTACCTCCTCTCTGGTCAAACAGATTGTCAATCAGTTCCCGGGAAACTCGGCTACTTCCTCTCTGACTGCCTCCAGCTCCGCTGAAGGGTCGAAGTTCACCGCTCCTCAGTCTCCTCCGGCGGTCAAGGCCAAACCAAAGTGGCAGCCCGGAGGCATTGTGGCTCCGCCGTCCCCAGAgttcccccctcctccccctcctgaCAGCTCCCTGGGAGaattccctcctcctccctcttcatcctcctccaaGACGGGCTCACCCATAAAGAAGTCGCCTTCCACCTCGTCCACGGGATCCACCAAGCGGGGGCCTCCGCCGGCCCCACAGAGAGCCTCCTCCATCCGGTCCAGCTCATCAGGCGAGACCCAGGATGAGCGGCCAAAGAAGGTGGAGAGCCTGGTCAACAAATTCGGCCAAGCTCCTCAAACGGGTACCTCTTCCAGCTCCTCGTCGGCGACCGGGTCTCCTTCGAAGGACTCCTCCGCGCTTCCCGCGCCGCTTCCTAAGCCGGGGAAGCTGAACTTGGCGAACCTCCCGTTGGCCCTCCAGGGGCTGCAGACGAGCCAGCCCCATCAGCCCTCTGAGTTCCCATCCCCTCCTCCACCGCCTCCCCCCGCCCAGCCTCCCCGCGTCGACTTGTCGCCCGACTACTTCCCGCCGCCCCCCAGTGACTTTGAgcttttccctcctcctccccacccATCGGAGTTTCATCCCCCCCCGAAGGTCGCCGTGGTGAACCCCCAGCCTCAGATGCAGCCGCCTCAGCAGCCGGTGCCTTCCTCTCTGTCGTCATCGACATGGAAACAAGGTTCGCTGAAAAAGGGGGCGATCCTTCCTCCGACGCTGAACCGGCGGACCAGCAACACGGCCCAGTATGACATCACCACCGCAATGCCCCTCTCGCCGCCTCCTCTGTCTCAGACCCCACCTCCCTCCCTGTCCTCttattcttcttcctcctcgcCCATCCCCGCCACCTCCCCGAAATCCCCGGGGCCAAGCACGCTGGCACTAAAGCCCCACTTCCTGGAAGACCTCAACCGCACCCTGAAGCGGAAGTCGGTGTCTCGCCACGGCTCGCTCACCTCCTCCCACCTCATCCCCTCCTCTAAGATGGAGCCCGTGGCCACCATGGACGACATGGCGCTCCTACCGCCTCCTCCCCCCGagctcctgcagcagcagcacggcATGCGAGGACACTCCCACACTTTGTCCCGCCACCACACGCACTCCCACTCCACCAAACATGCCAACATCTCAGGCTATGCAACGCTGCGGCGAGGCCCACCTCCCGCTCCTCCAAAACGGGACCAAAGCACCAAACTGACCAGTGACTGGTAGGGAGCGAGGACACTGGGCGGAGCCTAAAGAACTAAACTGACTATTTAGGTCTCGTGCAGAGAAGAAATAATCAATGTCTTGTCTTGACTTGTCCGTCTCTCCTCATCCTAAACCATCCACCCCTTTGAATTCCGAGCTAGTAGCAAACCGTCTTTCCTACTCTTAATCTCAGATTATGATTGTTCCTATTATCCTCATTATTACTATCATTACCAATACATGTTTAACCCAATGccatgagtaaaaaaaaaatacacacatatatatatatatatatatatatatatatgtatgtgtgtgtgtgtatctgtatacaagcaagccagaaaaaaaatcacctaTCAAGCTTTTTTCACAATGTCTGTGCAGCTTTGCATTGAAATATACAAAAGACGAGACTTGAATGACAACAGCAACAGGGACAATTTGCTGCACAATAACTGGTACTGCATGGAGCCGTGGCAATGGACGTAACGTTACCGATGAAGGGAAGGAGGGATCCACGGAAGGAACAAGAGATGCGAAAGTGGGACGACGTGTATAGAATTGTATGTTGTGAactgggaggggggagggggagcaTTGCAGGTTTATTTCAaacttttgtgtgtatgtgtgtgtgtgtgtgttttttatataaGATTATTTAATACTGGaaagatattattattataattattttaagtttttaagaAGTGTCTAAAGAGAATGAGTTTGACTGGACCTGGGTCTGTATTCTCAAAATAATGTCAAAGTGATGATTGGAGTTACCAAACTGGGTATATATTTGGATCATTTCATCTAATCATATTCATTTAAGCTTAGAGATTCATGACTGATTGGTTGGTGACTCCCACAAGATAAGATTTAATATTTAAAGGagcacgccgacttattgggactttaggtTATTCAccatatcccccagagttagataagtccatacataccct

Function

GO: NA

KEGG:

id description
K23488 RAPH1; Ras-associated and pleckstrin homology domains-containing protein 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171813 lncRNA upstream 90720 28712431 ~ 28713525 (+) True LOC120570261
XR_005641042.1 lncRNA upstream 90933 28712446 ~ 28713312 (+) False LOC120570261
TU171784 lncRNA upstream 270073 28533943 ~ 28534172 (+) True G127701
TU171740 lncRNA upstream 418603 28385417 ~ 28385642 (+) True G127665
TU171692 lncRNA upstream 460447 28343492 ~ 28343798 (+) True G127623
TU171844 lncRNA downstream 43 28892663 ~ 28893022 (+) False G127747
TU171845 lncRNA downstream 121 28892741 ~ 28895512 (+) True G127747
TU171846 lncRNA downstream 121 28892741 ~ 28893057 (+) False G127747
TU171842 lncRNA downstream 584 28893204 ~ 28895512 (+) False G127747
TU171861 lncRNA downstream 23352 28915972 ~ 28916196 (+) True G127762
XM_039818651.1 mRNA upstream 66687 28735598 ~ 28737558 (+) True LOC120570350
XM_039818347.1 mRNA upstream 95363 28707542 ~ 28708882 (+) True LOC120570124
XM_039818620.1 mRNA upstream 192761 28609691 ~ 28611484 (+) True LOC120570328
XM_039818333.1 mRNA upstream 306643 28492168 ~ 28497602 (+) True LOC120570107
XM_039818332.1 mRNA upstream 316495 28484923 ~ 28487750 (+) True LOC120570105
XM_039818176.1 mRNA downstream 405423 29298043 ~ 29299276 (+) False LOC120569952
XM_039818174.1 mRNA downstream 413206 29305826 ~ 29307000 (+) True LOC120569951
XM_039818175.1 mRNA downstream 413224 29305844 ~ 29307000 (+) False LOC120569951
XM_039818177.1 mRNA downstream 417734 29310354 ~ 29311230 (+) True LOC120569953
XM_039818178.1 mRNA downstream 423456 29316076 ~ 29316987 (+) True LOC120569955
XR_005641067.1 other upstream 394406 28388650 ~ 28409839 (+) True prkag3b
TU171231 other upstream 2386578 26411511 ~ 26417667 (+) False mphosph8
TU171128 other upstream 2674366 26116988 ~ 26129879 (+) True G127165
TU170822 other upstream 3145519 25630107 ~ 25658726 (+) False cacnb4a
TU171918 other downstream 136282 29028902 ~ 29041224 (+) True G127814
TU172007 other downstream 403864 29296484 ~ 29299361 (+) True LOC120569952
TU172063 other downstream 566524 29459144 ~ 29459978 (+) True G127932
TU172070 other downstream 575506 29468126 ~ 29474550 (+) False G127935
TU172092 other downstream 583492 29476112 ~ 29478950 (+) True G127938

Expression Profile