RNA id: XM_039818128.1


Basic Information

Item Value
RNA id XM_039818128.1
length 6011
RNA type mRNA
GC content 0.49
exon number 17
gene id LOC120569925
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 9376529 ~ 9474839 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGGGGACTGAGTGAGCAGTCCTGCTCACTGCTACAAACCCGGCGGAGATCGGAGGGGAAGGAGCGCACTGAgcgagagaacgagagagagactgcgagagagagagagagagagacatatccTGAGCGTCaaggagagagagcgagagagatagGAAGGAGCGGGGATAGAAGAAAGTGTTTCAGCGAAGAAAAAGCACAGTTTGCAGGAGGAGCGCGGAGAGGCTGCACGTTTATTTGCTCCGGATCAGTTTTACGCACGCACGCTGGAGCTGCCTCTTCCAGGAGATCTTGTGTTATCTTTTGCGCAAGAACGGACAGTATATTAAGAAAATCGTCGatgggaaaatgtttttttctttttaaatcatatGTCCTTTTACCAAGCAAATGCGCAATTGGGAATTGGGATATTTTATCGAGACGAAGAGGAAACACTTTTGTTCATGTTATGTCAAACTTAATAGTCCTCGGCAAAGGTTTCTGTTGGTTCGTGGTGGTTTTAACCAATGATTTCTACTTTGTTTGAAATTTTTGATTTTGACTGTCAACAGTGTCAGTGAGGTTTATATTGCCACGCGCGTTGAGACTGACGGGGAAACGGTGCTGCCGACTGTGCGCACAGCAATGGATTCTGAGGCTTTAAATATGTGTTTAGAGTAGATATTGCGCAGATTTCAGATCCTTCCGATCTTTAAAAGAAGAAGCACACGTGGACAAAGCTCGTACAAATAGTGCACAAACTTTGCGATATTCTTGGAGAGCCCAGTGAACGCAACCCGGCATTTGTGTTGGATGTTGGCCACTACTTGTGTTGCGCCTCAAAGAAAAAGAGAACTGTGAAAAGGGAGAGGAAAGGTGGACTTTGGACTGCAGCGTTGTCTcagataaacaaaataaaaccacagaggaggagaatagctgtttttttttctccacatcCGAGGGAAAAAGATGGATTTATTCATATGGCTTTGTGGATGTTTACTGGCTTTTCTCTCGCCTTCAGCAGTCCAAGCAGACGAAGGAGCTTCTGAGCCATGCGGTGGCTATTTAGATGCCAGCGATGCCGGCTACATCACCACCCCCGGCTACCCACTGGAGTACCCACCTCACCAGAACTGTCGCTGGGTCATCACAGCCCCCGAGCCCTCACAACGCATCGTCCTTAACTTCAACCCACACTTTGAGATCGAGAAACTGGACTGCAGGTATGACTACGTAGAGATCCATGATGGGAACTCGGAGACGGCTGACCTACTGGGGAAGCACTGCAGCAACATCGCCCCTGCACCAATCATATCGTCAGGGCCCTCACTCCACATCAAGTTCGTATCGGACTACGCCCACCAGGGGGCGGGCTTCTCGCTGCGCTACGAGATCTTCAAAACCGGTTCCGACTGTTCCCGGAACTTCACCACTCCCTTGGGTCTCATTGAGTCGCCGGGCTACCCCGACAAATACCCCCACAACCTGGAGTGCTCCTTCATCATCATTGTCCCTCCCAGCATGGATGTGACCCTCACCTTCCTCACCTTTGACCTGGAGAACGACCCCCTGCCGGGCGGAGAGGGGGACTGCAAGTACGACTGGCTGGAAGTGTGGGACGGGCTCCCTGGAGTGGGCCCTCTGATTGGTCGATACTGTGGGACCAGGGTACCTCCTGAGATCCAGTCATCTACCGGGATTCTCTCTCTGGCCTTCCACACTGACATGGCTGTGGCTAAAGATGGCTTCTCTGCTCGATACAACATGACGCACAAGGAAGTCAGTGAGACTTTCCACTGTAGTAATGCATTCGGACTGGAGTCAGGAAAGATCACAGATGACCAGATCACAGCCTCGTCAAGTTTCTACGATGAACACTGGCTGCCACGACAGGCCCGACTAAATTACCATGACAACGGATGGACACCCAATGAAGACAGCAACAGGGAGTACATACAGGTGGACCTCCATACCTTGAAGGTGCTTACAGGCATCGCCACGCAGGGCGCCATTTCAAAGGAAACTCAAAAGGCTTACCATGTCACCACCTTTAAGCTGGAGGTCAGCACCAACGGAGAGGACTGGATGGTGTACAGACATGGCAAGAATCATAAGGTTTTCCATGCCAACACTGATGCCACAGAGGTGGTTCTCAATCGGATCCCACAGCCGGTCCTGGCCCGCTTCGTACGAATCAGACCTCAGACGTGGAAGAACGGCATCGCACTGCGCTTCGAACTCTACGGCTGTCAGATTACGGATGCGCCCTGCTCAGAGCTGCAAGGCATGTTGTCTGGGCTGCTACCCGACTCCCAGATCTCTGCGTCGTCCATGAGAGACATCCACGGCTCCATGGGGGCAGCCAGGCTGGTGGCCAGTCGGTCAGGCTGGTTCCCCAACCCGACACAGCCCATAGCTGGAGAAGAGTGGCTACAGGTGGACCTTGGTGTGCCCAAGATGGTGCGTGGCATCATTACCCAGGGTGCAAGAGGGCTAGAGGGCAGCACCAGCGCTGAGAACAGAGCGTTTGTCAGGAAGTACAAACTGGCGCACAGCTTGACCGGCAAAGACTGGACTTACATCACTGACAGCAAGACTGGGTTCGCTAAGATTTTCGAGGGGAACGGCCACTACGATACTCCAGAGGTGCGGAGGTTCGATGAGATAGTGGCCCAGTTCATCAGAGTCTTTCCGGAAAGGTGGTCGCCTGCTGGGATCGGCATGAGGATGGAGGTCCTCGGCTGCGACCTGCCTGAAACCACCACTGTACCTGACACTGTGACCCCCACCCTGCCCAGAGTTGAACAGACCACTGCTGCAATGAGGCCAGCCACCACTCCGTCCCTGTCGGCTGTGTGTGACTTTGAGCAGAGCTTGTGCGGCTGGTCGGCTGATCCCCAGTCAGGTGTGAGCTGGTCCCTGCACACAGCCAGCAGCACTGCCACTGGACACGGCACACACGGAACGAGGCAGGATCTGGCGCTGGGATCAGACAATTTCTCAGGAAACTACCTCCACCTGGATGCAGGCGCCCATACCCAGCGCAAGCGAGCCCGGCTGATGAGCCCCGAGGTGGGGCCGGAGCAAGGCCCGCTCTGTCTCCTTTTCTACTACCAGCTCCAGGGGGAGGCACAGGGGAGCCTGAGGGTCCTGCTGAGGGACAGCGACCAGGAGGAGACGCTGCTATGGGCTCTGAAAGGAGACCAGGGGCCTCACTGGAGGGAGGGTCGCACCATCCTGCCCCAAAGCCCCAATGAGTATCAGGTGGCATTTGAGGGCTTTTTTGAACACCCTACCAGAGGCCACATCAGAATAGATAACATCCACATGAGCAACAGCATTGAGCTGGAGCAGTGTACACATCCCAGGCCTATGGATTTCGGAAAAGATCCTGTTTTCAACCACAAGCCCCCCATCAATGGAGACTATGTGTTTCCAGGATGGCCATCCTCCTTCTCCACCCCATCCTCCTCTGATGTGGACCCCTCCTCCGTCACCCTGGTGTCAGAGAAAGACAAGGATAACGCCTGGCTGTACACGCTGGACCCCATCCTCCTCACCATCATCGTGATGAGCTCTTTAGGCGTGCTGATGGGTGCGGTTTGCGCAGGACTGCTCCTCTACTGCACGTGCTCCTACAGCGGGCTTTCCTCGCGCTCCTCCACAACGTTGGAGAACTACAACTTTGAGTTGTACGATGGGATTAAGCATAAAGTGAAGATAAACCAGCAGAGGTGCTGCTCAGAGGCATGAAGAGGAGAAGTAGGAGAACTCTGGAGAACGATAGGGAAAGACACGTCCCGTGATCCCAGGTGATAGAAATTTTGGTTCTCGGTTTGGACAAAGCAAACATGAAATGTAAGCACTATCTGTTATTTTAATCCCCAGTGTCCCCTACCTAATATCCTGCTCTAATGTCTAAAGGGGGAAACGGTCAACCCAGAGATTCCCAAACAGTGGGAACTTGATCTCCCCTACATGCTATGAGGCCTAAACTGGGGGAACACCTGATCCCAGTCTCCCCTACCCACAGTACCATATCTCCTCCGCCTGCAGGAGAGAGCCTGCTCGATTCTAAAAGcctgtgaatgaatgaatgaaggaatGAATATGAATGACAGATCTACCATAGAATATAACCCACCAGCCACTGGAATGAAGCTAGGAAAGTGATGGACTACAGCACCCATGATAATCTGGACATTTGGACCACAAATGACAgcacagtctggtgtgtttggTTAAAATGTCGGTAATGGGATTCTTAATGAAGAAGATGTACCAATGACTGGTACTTTGCAGAAGGGCAATGTCAAATTTGTCCTCATCGGCTTGAATTTGAATGTGGCCAATAGAGACGGCATGCTGAAATCAAAAAGCTCCAGCTTCTGACTGTTCGTGAAGACTTCAGCACCAGTGGACCATTTATCGTGGGTACTTTTTACTGAAATCAACACATATCAAGCGAATGCCTATCCCCTAAAGAAGTTTAAAAGCTATCAAACCACACTACTCAAATTAATCTAGATTTCTAAAGGTGAAGAAGGAAAAGAGGATGAAAAAGgacattttctttctgtttgtttctgaAAGTTTTAGATATGAGTTCTGGGACTTTTCAAACGTCCATTTAGCCGGCCATATGGCGCTCGCTCGCTCCTTTGTCTGCCCTCGGTCTGCGCTTTGTGAAACCAGTGGCATAGAAGAGTAATGGTGactgtttttgttatgttttagaCTCGTgtctgtttgaaaaaaaaaaaggtcaagaaAAGCCAGCTTCAGTTCGTAGCCGCCCTGTAACGCCATTTTTAGACTTTCTTTAGCATTGTGTTGGACTCCATGGTCTTAACTGTTACTTCAGTCCTTTTCTATTTTCACACATGTTCCATTACAGATGATCAGTCTTTACAAAGAGTAGAGGAAAGGTAAAGAAAGACGGTAGACAGAAAGTCAGAGGTTTATCTAAATCTAACATGCTGTTATGGAGTCGTGCTTTAGATTCAGTATTCTAGGGTTTGTCTTTggtatatatctatattttttGCTTTATAGACTGTATGATGCCCAAATGATAGACAGACACTGTGGACAAAATGTCAGTGATTGTTTTATTGCAACCTATGGATTGCCAAAGAGCCGTGTATGTGCACAGGGGGTCTGAACAAGTGTTAAAAGAGGCCTGGACTGAGAGTGATAAATCATCCTGCCTTTTATTTACCGCTCTTAgtgtcatcccccccccctgAAAGAAGGACACTCAAAAAAATAGAAGGAGAAGGAATGACTAAAGGAGGAGAATGGAAATCGTACCGTCGACTTTCTTGGACACACAATCGAGCCTTAAGCTAACTACAGTATACGCTGTATCGGAGGACAGCCATCAAGGAGTGCCAGTGCTGCTGGAGAGACTGAAcagaaggacacacacacacacacacacacacacaaagatatacagacagagaagaaaaggagagaaaagagagagaaaaatgtatgtttacatgcaggaGAAGTAACCTGTTGATGTCTGAACGTCATAACTAAAGGTTTGTACTCAGATTATCAAACGCCTGGTAAGGATACTGGACCTACACAAATATTCAGGTTACATGTGAACATGTGTGGCCAGCATTATACAGATGTTTCTCCCAAGAATTACATTAATATGCCACTATTTGGTTTCAGCTAAATACATTTTGGTGAAACTTAGCTTGAACttaaaggtaccctgtggagtttttgaccactTGTAACACTATGGAGCGATGTTTTCTGTTGATGCATGCACACAAGTATGTAGCAACGTGGTTTCACACTATTCCACTGACTGGCGGTTGGCATGGaatggaaaaaagcaacaatttTCAGCAACGGGGAAGAAGAAGACTAGCCTGAGCCAGACCCATAttaagatgttgggtctgggaactcaccattggcagggctcaatccgagggtagggataaacggttgtctttcaagttccctctgcacgcaataggatagcgctacaaccaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165366 lncRNA downstream 46056 9327761 ~ 9330473 (-) True G122952
TU165364 lncRNA downstream 51729 9324400 ~ 9324800 (-) True G122950
TU165343 lncRNA downstream 88827 9216810 ~ 9287702 (-) False G122934
TU165345 lncRNA downstream 88827 9216810 ~ 9287702 (-) True G122934
XR_005640855.1 lncRNA downstream 370536 9005329 ~ 9005993 (-) True LOC120569286
TU165405 lncRNA upstream 158666 9633504 ~ 9641776 (-) True G122983
TU165407 lncRNA upstream 348346 9823184 ~ 9823594 (-) True G122985
TU165408 lncRNA upstream 349079 9823917 ~ 9824186 (-) True G122986
TU165413 lncRNA upstream 354593 9829431 ~ 9832190 (-) True G122990
TU165465 lncRNA upstream 435622 9910460 ~ 9910997 (-) True G123029
XM_039818573.1 mRNA downstream 200981 9146592 ~ 9175548 (-) False mrasa
XM_039818572.1 mRNA downstream 200981 9146592 ~ 9175548 (-) True mrasa
XM_039817136.1 mRNA downstream 254202 9033912 ~ 9122327 (-) True pth2ra
XM_039817175.1 mRNA downstream 474745 8887863 ~ 8901784 (-) True LOC120569317
XM_039817531.1 mRNA downstream 565943 8804375 ~ 8810586 (-) True acmsd
XM_039817957.1 mRNA upstream 49903 9524741 ~ 9773383 (-) False pard3bb
XM_039817956.1 mRNA upstream 49903 9524741 ~ 9773382 (-) True pard3bb
XM_039817958.1 mRNA upstream 49903 9524741 ~ 9773381 (-) False pard3bb
XM_039817959.1 mRNA upstream 49903 9524741 ~ 9714397 (-) False pard3bb
XM_039817237.1 mRNA upstream 362203 9837041 ~ 9841570 (-) True LOC120569366
TU165255 other downstream 376406 8999462 ~ 9000123 (-) True G122878
XR_005640909.1 other downstream 573439 8798035 ~ 8803090 (-) False ccnt2a
TU164950 other downstream 2058936 7181945 ~ 7317593 (-) False tmeff2a
unassigned_transcript_606 other downstream 2197371 7179077 ~ 7179158 (-) True trnas-aga_9
unassigned_transcript_605 other downstream 2232321 7144127 ~ 7144208 (-) True trnas-cga_8
TU166096 other upstream 3144515 12619353 ~ 12619815 (-) True G123481
TU166598 other upstream 5309723 14784561 ~ 14794497 (-) True G123886
TU166600 other upstream 5309723 14784561 ~ 14789906 (-) False G123886
TU166697 other upstream 5509647 14984485 ~ 14993789 (-) True G123960
unassigned_transcript_607 other upstream 5942362 15417200 ~ 15417272 (-) True trnak-uuu_17

Expression Profile