RNA id: XM_039818173.1


Basic Information

Item Value
RNA id XM_039818173.1
length 1114
RNA type mRNA
GC content 0.43
exon number 8
gene id rabl3
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 11130057 ~ 11134144 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACTGTTTTCTTCCGGGACGCCGCTGTCACCAAAAAAATGGCTTCTCTTGACAGGGTAAAAGTATTAGTTTTAGGAGATTCCGGGGTGGGCAAGTCTTCCTTGGTCCATCTGCTATGTCAGAATCAGGTGTTAGGAAATCCGTCATGGACTGTTGGTTGCTCTGTGGATGTACGGGTCCAAGACTATAAAGAGGGTACCCCGGAGGAGAAAACCTACTACATTGAACTCTGGGATGTCGGAGGATCTATTGGCAGTGCCAGCAGTATCAAAAGCACCAGAGCCGTCTTCTACAATTCAGTTAATGGAATTATGTTGGTACACGATTTAACAAATAAGAAATCCTCTCAGAATCTCTACCGCTGGTCACTAGAAGCTTTAAACAAGGATTCCTCACCAACAGGAGTTATTGTCTCAAACGGTGACTATGATAGAGAGCAGTTTGCTGAGAACCCAGTGCCTTTGCTGCTGATTGGCACCAAGTTTGACCAGATCCCAGAGAATAAACGCAATGAAGTTCTTACTCGGACGGCCTTCCTGTCTGAGGACTTCAATGCAGAGGAGATCAATCTCGACTGCACCAACCCAAGATACCTTGCTGCAGGCACATCAAACGCAGTGAAGCTTAGCAGGTTCTTTGACAAGGTAATAGAGAAGAGATATTTCACAAGAGATCCAAGTCAGATGCCGGGTTTCACAGACCGAAAACGGTTCAACTTCAAAAGTTTGCACTATGACTGAAGCGCCATGAACGCAACAGAAGTGGTTTGTGGTTTGGCTGTAATGCCTTTGGGCTTTTACACCACAAGGCACATTCACTGACATACTTTGTgtagccccccccccacccgccTATTGTTTTTTCACTGCCATTTCTTCTTCATGCAAATCCTTCTCAACACTTTTTCATCTGCTGTGTGTAAAGACCTAAATTACCGCTGCAAAAAATAGAattacaaaataatagaatagtTTATAGaataataaagataaatatGTACATTCAGTTTAGCACATTTCGGAAATGAAGAAACATGCAAGATGATGTCAAAGGGCATAGGCACATCTTATAAATGTACAGTGAGATTTTGTGTTAAATCACTTTTCTTTTATACAA

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07933 RABL3; Rab-like protein 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165667 lncRNA upstream 187154 10940052 ~ 10942903 (+) True G123184
TU165663 lncRNA upstream 196702 10931682 ~ 10933355 (+) True G123181
TU165654 lncRNA upstream 207756 10919046 ~ 10922301 (+) True G123172
TU165623 lncRNA upstream 328204 10801489 ~ 10801853 (+) True G123148
TU165608 lncRNA upstream 437588 10692265 ~ 10692469 (+) True G123133
TU165794 lncRNA downstream 124843 11258987 ~ 11260642 (+) False LOC120570060
TU165812 lncRNA downstream 275526 11409670 ~ 11425251 (+) True G123279
XR_005641051.1 lncRNA downstream 484452 11618596 ~ 11626534 (+) False LOC120570367
XR_005641050.1 lncRNA downstream 484463 11618607 ~ 11634792 (+) True LOC120570367
TU165872 lncRNA downstream 709236 11843380 ~ 11845465 (+) True G123322
XM_039818282.1 mRNA upstream 511362 10335991 ~ 10618695 (+) True lrp1bb
XM_039817192.1 mRNA upstream 912407 10211110 ~ 10217650 (+) True LOC120569327
XM_039818582.1 mRNA upstream 1025890 10099932 ~ 10104167 (+) True LOC120570306
XM_039817213.1 mRNA upstream 1175180 9949090 ~ 9954877 (+) False fev
XM_039818994.1 mRNA downstream 22446 11156590 ~ 11175940 (+) True nxph2a
XM_039818995.1 mRNA downstream 22446 11156590 ~ 11175940 (+) False nxph2a
XM_039818288.1 mRNA downstream 117773 11251917 ~ 11259053 (+) True LOC120570060
XM_039817658.1 mRNA downstream 410464 11544608 ~ 11546302 (+) True LOC120569661
XM_039817659.1 mRNA downstream 416771 11550915 ~ 11581353 (+) True dars1
TU165581 other upstream 511361 10607484 ~ 10618696 (+) False lrp1bb
TU165424 other upstream 1201166 9926817 ~ 9928891 (+) False umps
TU165423 other upstream 1205217 9920711 ~ 9924840 (+) False umps
TU165208 other upstream 2333311 8795453 ~ 8796746 (+) True G122846
TU164880 other upstream 3981018 7146625 ~ 7149039 (+) True G122588
TU166170 other downstream 1915614 13049758 ~ 13279866 (+) True G123539
TU166270 other downstream 2219162 13353306 ~ 13354085 (+) True G123633
TU166312 other downstream 2501442 13635586 ~ 13677346 (+) False cps1
TU166397 other downstream 3099188 14233332 ~ 14234070 (+) True G123742
XR_005640926.1 other downstream 4004333 15138477 ~ 15155886 (+) False trpm2

Expression Profile