RNA id: XM_039818175.1


Basic Information

Item Value
RNA id XM_039818175.1
length 866
RNA type mRNA
GC content 0.48
exon number 3
gene id LOC120569951
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 29305826 ~ 29307000 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AGTGACACAGTTGGGATGGGCAAAATCATCTTCTACGAGGACAAGAACTTCCAGGGTCGCTCCTATGAGACCAGCAGCGACTGTGCCGAGCTGACCTCCTACCTGAGCCGCTGCAACTCCTGCAGGGTGGAGAGCGGCTGCTTCATGGTCTACGAACGTCCAAATTTCATGGGCCACCAGATGCTGGCAAGGAGGGGAGAGTACCCTGACAACCAGCGCCTGATGGGTATGACCATGAGTGACTGCATCCGTTCCAGCCGCATGATCCCCACGCACAGAGGTCCATTTAGGATGAGGATCTACGAGAGGGAGAACTTCAGAGGTCAGATGAATGAGCTGACGGACGACTGCGACAACATCCAGGATCGTTTCCGCATGTCCGACTGCCAGTCTGCCCACGTGATGGACGGCCACTGGCTGATGTACGAGCAGCCCCAATACAGAGGCAGGATGCTGTACCTGAGGCCCGGGGAGTACAGGAGCATGAGAGACATGGGAATGGGTCCCATGGACATGAGGATTGGATCCATGCGACGTATCATGGACTCCTGTTAAAGAACAGAACAGGATCGAGACTTGAAAATGTAAtcaacaaatattaaaaaagaagTTATCAATTTATCGAGTTTCAAAACGCCGGGCAGAAATTCTGGGCACAGATTAGACATCAGAGAAAGAAATTGCATGAATTATCAGCACCCAACTGTTCCGGGATGTCAGGACAAATTGAGCTGTAGTGAATGCTGCTACTTTAATAACTGTATCTAATAGCCAAGTCaagacttcttcttcttctaactATGAAATGTGTTATGTCATATTTGATGCACGTGacattaaaaatgaatatcaaaagaacaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171989 lncRNA upstream 12286 29292980 ~ 29293558 (+) True G127872
TU171907 lncRNA upstream 221184 29078731 ~ 29084660 (+) True G127805
TU171908 lncRNA upstream 221184 29078731 ~ 29084660 (+) False G127805
TU171910 lncRNA upstream 261623 28984700 ~ 29044221 (+) True G127806
TU171883 lncRNA upstream 367354 28938151 ~ 28938490 (+) True G127784
TU172015 lncRNA downstream 87183 29394183 ~ 29398629 (+) True G127893
TU172018 lncRNA downstream 149003 29456003 ~ 29456885 (+) True G127896
TU172065 lncRNA downstream 154912 29461912 ~ 29462923 (+) True G127934
TU172069 lncRNA downstream 160144 29467144 ~ 29469501 (+) True G127935
TU172098 lncRNA downstream 179231 29486231 ~ 29489650 (+) True G127942
XM_039818176.1 mRNA upstream 6568 29298043 ~ 29299276 (+) False LOC120569952
XM_039818102.1 mRNA upstream 413224 28804245 ~ 28892620 (+) True raph1a
XM_039818104.1 mRNA upstream 413224 28804245 ~ 28892620 (+) False raph1a
XM_039818105.1 mRNA upstream 413224 28804245 ~ 28892620 (+) False raph1a
XM_039818103.1 mRNA upstream 414177 28804244 ~ 28891667 (+) False raph1a
XM_039818177.1 mRNA downstream 3354 29310354 ~ 29311230 (+) True LOC120569953
XM_039818178.1 mRNA downstream 9076 29316076 ~ 29316987 (+) True LOC120569955
XM_039818182.1 mRNA downstream 39013 29346013 ~ 29346913 (+) True LOC120569959
XM_039818179.1 mRNA downstream 42308 29349308 ~ 29350179 (+) True LOC120569956
XM_039818181.1 mRNA downstream 46969 29353969 ~ 29354850 (+) True LOC120569958
TU172007 other upstream 6483 29296484 ~ 29299361 (+) True LOC120569952
TU171918 other upstream 264620 29028902 ~ 29041224 (+) True G127814
XR_005641067.1 other upstream 896005 28388650 ~ 28409839 (+) True prkag3b
TU171231 other upstream 2888177 26411511 ~ 26417667 (+) False mphosph8
TU171128 other upstream 3175965 26116988 ~ 26129879 (+) True G127165
TU172063 other downstream 152144 29459144 ~ 29459978 (+) True G127932
TU172070 other downstream 161126 29468126 ~ 29474550 (+) False G127935
TU172092 other downstream 169112 29476112 ~ 29478950 (+) True G127938
TU172154 other downstream 314692 29621692 ~ 29622929 (+) True G127971
TU172113 other downstream 319524 29626524 ~ 29632382 (+) False LOC120569632

Expression Profile