RNA id: XM_039818202.1


Basic Information

Item Value
RNA id XM_039818202.1
length 3569
RNA type mRNA
GC content 0.46
exon number 13
gene id galnt3
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16704149 ~ 16712678 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CACAGTCACTACAGATGGAGTCACTGTGCAAGTCAAAGGCACAGAGAACTCAAACTGGGCACCAGAGCATGCTCCCTGCGGCTGGAATCCGCGTCTTTACTCCTTCAAGCATCCAACTCTTTATGAAGACCATCCGCTGTGGGGAACCTGCGAAATGTAAGGATTAGATGAACTACAGAGTCCTCTGGTATGGATTGTGACACGCAGAAGTTCTCTCTGCGCATGCGCGCCAGCACGTCTCCTCCCTCTACCTGAGAGGGGCGCACCTGGATCCAACGAGACGGAAGTTTTGTGGAGGCACAGAGCAAATTGTTTTTGTCTTCGCGAAAAAGTTTCTTTGGAGTTCAAGCAACTGATTGAGGATCTCCAATCGAAGCAGGATGTCATTCgttgacattttaaagaacAATTTAGGGTGTTTCTAACCTAACTGTTCCGCGTCTAATGCGGAATGCCATTCCAAAGCCAGCCTGCTCTCTATTCAAGAAGAATGATAGCTCTCCGCAGAGTGCTCCGAAGGCGATTGCACCCAGTTAAACTGGCGATAGTGGCCCTTGTCTTTGTCACATTTGTGTTCTTCATACAATGGGAAGTTGGGAGCCAAAACCAACAGGAGGACCCGTGGCTGAAGGAGATGGCAGTGAAGCGGGATGCCATGCTGGGCATGGTGATGGGAGCTGTTAATAACTTCAGGGATGTGATTCCAAAGATGCAGATCAGAGCCCCTGTACGTCTGCCAGACAGGGCAGACAGCGGGTCCTGTCTGCCGGGTCACTACACTGCCACTGAGCTCAGGCCAGCTCTGGAGCGGCCACCTCAGAACCCTGTTGCTCCTGGAGCAGCTGGGAAAGCTTTCCACACAGAATCACTGAGCACTGAGGagcagaaggagaaggagaggggtGAAGAGAAACACTGCTTTAACCTGTATGCCAGTGACCGCATCTCCTTGAGCAGAGACCTGGGCGCAGACACCAGACCACCAGAATGTATTGAGCAAACCTTCAAGCGATGCCCCGCCTTGCCGACCACCAGTGTGATAATTGTGTTTCACAATGAGGCTTGGAGCACCCTGCTAAGGACAGTATACAGTGTCCTCCACACCTCCCCTGCCATTCTCCTCAAGGAGATCATCCTGGTGGACGACGCCAGCGTTGATGAAGCGTTGAAGGACAAGCTGGATGAGTATTTGAAGCGGCTGAGCATTGTTCAAGTTGTCCGCCAGCGTGAAAGGAAAGGACTCATCACCGCTCGGCTGCTGGGTGCCTCCGTAGCCACCGGTGACACACTCACCTTTCTGGATGCTCACTGTGAATGCTTCAATGGATGGCTGGAGCCCCTGTTGGCCAGGATAGCAGATAACTACACTGTAGTAGTGAGTCCTGATATAACCACTATTGATCTCAATACTTTTGAGTTTGTGAAACCGTCCCCGTATGGCCAGAACCACAACCGAGGAAACTTTGACTGGAGCCTTTCCTTCGGCTGGGAGAGTCTACCAGATCATGAGAAACAAAGGAGGAAGGATGAAACATACCCGATCAAGACTCCCACATTTGCTGGTGGGCTTTTCTCCATCTCAAAAGAATATTTCTACCATATTGGAAGCTATGATGAAAAAATGGAAATCTGGGGCGGTGAGAATATTGAAATGTCGTTTAGGGTGTGGCAGTGTGGCGGACAGCTGGAGATCATCCCTTGTTCCATTGTTGGTCATGTTTTCCGCACCAAGAGCCCCCACACCTTTCCCAAGGGCACACAAGTGATTGCTCGTAACCAGGTTCGACTGGCGGAGGTCTGGATGGACGACTACAAGGAGATCTTTTACCGCCGTAACCAGCAAGCTGCACAGATGGCAAAAGATAGGGCCTTTGGAGAGATCTCCGAACGCATGGACCTCCGTGCGCGACTGCAGTGCAAGAGCTTCTCATGGTATTTGAAGAACGTTTATCCAGAAGTCTTCATGCCTGATCTCAACCCACTCCACTTTGGCTCAGTGAAAAATGTCGGCAAAGACTCATGTCTGGATGTTGGAGAGAACAATGAGGGTGGGAAACAGCTGATCATGTACCCATGTCACGGACTAGGAGGAAACCAGTATTTTGAGTTCTCCACACGTCACGAGATTAGACACAACATTCAGAAggagctgtgtttgcacgggGCAGAGGGGACTGTGAAGCTGGAGGACTGCCAGTATAAAGGCAGGAACACATTTGTAGGAGCAgagcaaaaatgggaactgaaggatAACCAGTTATTCTACATTCCAGGATGGAACATGTGTCTGAGTGCCCGTCATGAGCATCCCTCTCTGGCCCTCTGCAACCCCTCGGACATGTACCAGCTCTGGTCCTTCGTCTGAGTCTGCAAAGTACCACTTTGCAGAATAGCCACTCTAAAAActgaactgctgctgctgggaagtTTGGACTTTGGGGAGAAACCCCAGTGTGCCACTGCTGGAAAGGAAGAAATCAAACAATGATCCCAGTCAGACTGTGAACTGAGATTCTTGAAACAATTAAGATGCACTGTGCTGACAAGTGCCTCTTTTGTGTTTGAGATGTCTTCACTAGTCCAAGTCATTGCAACCAATGCGTGCAGAATGAGGTATATGAAGCCTAACACTGAACATTTTCCTGTGAGACCCatgaatctaaaacaaaatcaTACAAAAAGACACAGTAGATGGGGTTAAAGTTGGACACACAAAAATCCCATATGTTATGCACCAAAGAGATTGAAAGTGAAAACCTGAAACACACATAACTGTATGATGTGCATTGCccccctttttaaaataacttttttttaataataatacaaaaccttttattttttatatatatatatatatatatatatatatatatattagtgttTATACTGGGTGGGTTGAGTGGTGGAGGGATAGGTAGTGGTGTGGTGGGGTTGTTGCAGGTCTCGGTGGATGCAGAATGATGGCTTCTACAGTGTTGTGATCAAAATAGTCTTCAGATCAGGATAGGAGTTGATTTGAATTATTTCCAGCTAACTATGAGACCAGAAAACATTGGCAAGGCATAGATTTTATAATTTCTTtacagttgccagtttattagaaaaaaaaacgaatgcagtctaatacaacaacCCTGCAATAAATCCTCCCTTAACTAACATTATAATGTGGTGCTGTTAAATTATGTTGCACCATGCTtaggtgtttctaatattatGTCAAACGATTTTATAACCATTCACCATGCATTCTCTTTTTAATTGTGGCAATGTTTATCTgtaatatttccatttttttatacTTAATTTTTTTACGTGAAATGAATGTACGGAAGGAATTCTAATTGTTGATCAAATGTCTGAAACGCTACATCTAAACTGGAGTCCACTAATGAGTCTCTGGTGCAGGCACTAGTGTTTAGATGGCTGTGGAATATTGTAAATAACTTTAAGTTTCAGACTGGGTAAGAAACAGctgcaatgtgtgtgtttgtaaactGTCTATTTTTGCCTTGGTATTAAGAGGTCTTATTTTTAGGTTAATAAATTCAGTTGGGTAGCACTGA

Function

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167326 lncRNA upstream 220 16703371 ~ 16703929 (+) True G124430
TU167325 lncRNA upstream 333 16703371 ~ 16703816 (+) False G124430
TU167327 lncRNA upstream 405 16703371 ~ 16703744 (+) False G124430
TU167290 lncRNA upstream 71808 16598643 ~ 16632341 (+) True G124407
TU167297 lncRNA upstream 74035 16596708 ~ 16630114 (+) True G124408
TU167450 lncRNA downstream 244047 16956725 ~ 16957914 (+) True G124524
XR_005641084.1 lncRNA downstream 293907 17006585 ~ 17008508 (+) True LOC120570570
XR_005641083.1 lncRNA downstream 297467 17010145 ~ 17011912 (+) True LOC120570569
TU167600 lncRNA downstream 544164 17256842 ~ 17257502 (+) True G124627
TU167604 lncRNA downstream 549059 17261737 ~ 17262826 (+) True G124631
XM_039817988.1 mRNA upstream 854 16690517 ~ 16703295 (+) True ttc21b
XM_039817985.1 mRNA upstream 18663 16659981 ~ 16685486 (+) True scn1laa
XM_039817986.1 mRNA upstream 18663 16659982 ~ 16685486 (+) False scn1laa
XM_039817987.1 mRNA upstream 18663 16672513 ~ 16685486 (+) False scn1laa
XM_039818486.1 mRNA upstream 326921 16345690 ~ 16377228 (+) False slc4a10b
XM_039818542.1 mRNA downstream 44968 16757646 ~ 16775305 (+) True xirp2b
XM_039818543.1 mRNA downstream 44968 16757646 ~ 16775305 (+) False xirp2b
XM_039819125.1 mRNA downstream 63771 16776449 ~ 16832994 (+) False b3galt1b
XM_039819126.1 mRNA downstream 63789 16776467 ~ 16832994 (+) True b3galt1b
XM_039818121.1 mRNA downstream 147732 16860410 ~ 16876464 (+) True cers6
TU167128 other upstream 602538 16099271 ~ 16101611 (+) False dap1b
XR_005640926.1 other upstream 1548263 15138477 ~ 15155886 (+) False trpm2
TU166397 other upstream 2470079 14233332 ~ 14234070 (+) True G123742
TU166312 other upstream 3026803 13635586 ~ 13677346 (+) False cps1
TU166270 other upstream 3350064 13353306 ~ 13354085 (+) True G123633
TU167490 other downstream 285103 16997781 ~ 16999532 (+) False col28a2a
XR_005641003.1 other downstream 415203 17127881 ~ 17177640 (+) False myo3b
XR_005640989.1 other downstream 1147482 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other downstream 1148075 17860753 ~ 17880726 (+) False hoxd10a
XR_005640988.1 other downstream 1148194 17860872 ~ 17880726 (+) False hoxd10a

Expression Profile