RNA id: XM_039818242.1


Basic Information

Item Value
RNA id XM_039818242.1
length 2949
RNA type mRNA
GC content 0.47
exon number 11
gene id mid1
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18977212 ~ 19004027 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CATGTGCTACTGAATGCTGAGCCGTCAGTGGGAGTTGCATCTTCTCGCTGTGTTTTAGAGGATCACACTGGACAATAGCACATAGCTGATCAGCTTCCCTGGATTTCGCTGACGACCTCACTTTGTTTTGCCTGAAGATGGAAACGCTGGAGTCGGAACTGACCTGCCCAATCTGTCTGGAGCTCTTTGAGGACCCGCTGCTCTTGCCCTGTGCTCATAGCCTTTGTTTCAACTGTGCCCATCGCATCCTGGTCTCACACTGCACGCCCAGCGAGCCAATTCAGTCCATCAGCGCATTTCAGTGTCCAACCTGTCGCTATGTCATCACCCTCAACCAGAAGGGTCTAGACGGACTCAAACGCAACGTTACATTACAGAACATCATTGACCGCTACCAGAAGGCTTCTCTAAGTGGACCTAATTCTCCTAACGAGACTCGGCGCGAGCGAGCCGCCCCCGACAGCAAAGCCATGACTTCCCCCGGGGACCGGGTGCAGTGTCAGTTTTGTGAGCAGGACCCTCCGCAGGACGCTGTGAAGACCTGCGTCACCTGTGAGGTGTCATACTGCGATGAGTGTCTCAAGGCCACCCACCCCAACAAGAAGCCGTTCACGGGCCACCGTCTAATCGAGCCCTTGCTGGACTCCCATCTGCGAGGGCTTATGTGTCTGGAGCATGAGGATGAGAAGGTCAACATGTACTGTGTGACAGATGAACAGTTGATCTGTGCATTGTGTAAGCTGGTTGGCCGACACCGGGACCACCACGTGGCAGCCCTCGGTGACCGATTTGACAAACTCAAGAAATCCCCTGGCCGTTATCTCTATGTGGTGGGGCGTGGTCATTCACACCAGGAGGCAGACCAGCAAGCTTTGGATTCCAACCTCAGTAGTCTAATCAAGAGAACCAGTGAGTTGGAAAGTCTGATGGGCAAACTCATCCAAACCTGCCAACATGTGGAGGTTAACGCATCGCGACAAGAAAACAAGCTGCTGGAGGAGTGTGACCAGCTGATTAATATCATACAGCAGCGGAGACAAATCATAGCTACCAAGATAAAGGAGGGCAAGTCTGTGCGGCTGAGGAAACTAGCCCAGCAGATAGCCAGCTGCAAGCAGTGCATCGAGAGGTCCTCCTCCCTCATCACTCAGGCCAACCAAACTCTCAAGGAGACGGACCACACTCGCTTCCTCCAAACGGCTAAAAGCACCTGTGAGAGAGTTTCTATGGCAACAGCTTCCTCTCAAATCCTGTTACCAGAAATGAACCTGAATGATACCTTTGATACTTTTGCGTTGGACTTCACACGGGAGAAGAAAATGCTTGAAAGCTTGGATTACCTCACAGCACCAAATCCACCAGTAATCCGTGAGGAATTATGTACAGCTTCATACGACACGATCACAGTTCACTGGACATCAGATGACGAATTCTCTGTTGTATCATATGAACTTCAGTATGCCATCTTTACCAGCCAATCTAATGTTGTCAGTTTGTGCAACTCTGCTGACAGCTGGATGATTGTACCAAACATCAAGCAAAATCACTACACTGTGCACGGGCTTCAGTGTGGCACCAAGTACATTTTCATACTGAAGGCCATAAACCAGGCTGGAAACCGCAGCAGTGAACCAGGGAAACTCAAGACCAACAGTCAACCATTCAAGTTGGACCCAAAGTCAGCTCACCGGAAGCTGAGGTTGTCCCATGACAACCTGACTGTGGAGAGGGACGAGACGTCATCCAAGAAGAGCCACAGTCAGGACCGCTTCTCCAGCCACAGCAGCTACGGTGTCGCAGGAAATGTCTACATCGACAGCGGCCGCCATTACTGGGAAGCTCTGATAGGAGGGAGCACATGGTTTGCAGTGGGCATTGCATACAAGTCAGCACCGAAACAAGAGTGGGTTGGCAAAAACTCTGCGTCCTGGGTACTGTCTCGATGCAACAACTCGTGGGTGGTGCGTCACAACAGTAAGGAGATGCCCATCGAGCCTTCCCCCCACCTGCGTCGTCTCGGAGTGCTGTTGGACTATGACTCTGGATCTCTGTCTTTCTACGACGCTGTCGGCTCTCAGCACTTGCATACATTTGATGTTGACTTTGCTCAGCCAGTCTGCCCCGTGTTCAACGTCTGGAACAGGTGTTTAACAGTCCTCACTGGACTGCCCATCCCAGATCACTTAGAGGGGACAGACTACAACAACTGACAAAACCTGTCATGCTGGATTTTCTTTGTGTACCCAAAAAGAGACCAGACTGcctgcaccacattgactgtgATGTCCACATACtgttgacaaaataaaaacagtaaccGAACGAGATGCAAATATTGGCCCAGGTGTACATTCCTAATCAAGCCTATGTTGAAATTCATTAGAATTATTTAAGAAATGATTTACAAGCTTCTGTAGATGTATTTCTTTGCTTTGCACATATGGTATATGTACATTACACTGCTGAATGGTTCTAAGGGTTTGCTTACAGTTTGAAATTAATTTTCAAATAGGcaccatatttttttattatgtctaAGTCATATtacacattttcccattcatGTGTGAAGGTGTATGACAGGGTGACGAGCAGACTCTCTGACTCTGATGTTTATCGAAGGTtgtattattgtttattttaaatgcaatgtttttgaaagatttttttaaatcatagcaCTTTGAGAAGTATAAGTCactataaaatgtatttcaaagccacgtaattaaaatgtttccttgtcattgttttgttaggaaaaaaacacttaaataaaTCACATAACAAAAATGAACAAGTTTCACATGTGAAATCAGTCAATTCAGCCATTGTGACATATTTATTATCTGTAAATATGAGTGCAGTTCAGCATTATGAGATCATTCATCACAATTTTCACATTTAAGTTTCTCTCTGACATCATTTAATAAAAGTGACTTAATTTGA

Function

GO:

id name namespace
GO:0005622 intracellular anatomical structure cellular_component
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168281 lncRNA downstream 129843 18845832 ~ 18847369 (-) True G125116
TU168278 lncRNA downstream 131917 18844546 ~ 18845295 (-) True G125113
TU168277 lncRNA downstream 132874 18844100 ~ 18844338 (-) True G125112
TU168273 lncRNA downstream 148710 18827542 ~ 18828502 (-) True G125108
TU168265 lncRNA downstream 160678 18816330 ~ 18816534 (-) False LOC120570508
TU168365 lncRNA upstream 73562 19073235 ~ 19076766 (-) True G125173
TU168374 lncRNA upstream 89829 19089502 ~ 19090779 (-) True G125178
TU168387 lncRNA upstream 108627 19108300 ~ 19111784 (-) True LOC120569517
XR_005640882.1 lncRNA upstream 109011 19108684 ~ 19113781 (-) False LOC120569517
TU168446 lncRNA upstream 202073 19201746 ~ 19205941 (-) True G125227
XM_039818436.1 mRNA downstream 2205 18962289 ~ 18975007 (-) True cog3
XM_039818435.1 mRNA downstream 30137 18943351 ~ 18947075 (-) True ednrbb
XM_039817218.1 mRNA downstream 74115 18898676 ~ 18903097 (-) True pcdh8
XM_039817057.1 mRNA downstream 91425 18873063 ~ 18885787 (-) True LOC120569248
XM_039819129.1 mRNA downstream 124422 18849289 ~ 18852790 (-) True slitrk5b
XM_039818893.1 mRNA upstream 11154 19010827 ~ 19033189 (-) True LOC120570505
XM_039818894.1 mRNA upstream 11154 19010827 ~ 19024007 (-) False LOC120570505
XM_039817378.1 mRNA upstream 116902 19116575 ~ 19118587 (-) True trappc2
XM_039817373.1 mRNA upstream 128551 19128224 ~ 19158065 (-) True gpm6bb
XM_039817372.1 mRNA upstream 128551 19128224 ~ 19142836 (-) False gpm6bb
TU168242 other downstream 272535 18703095 ~ 18704677 (-) False G125090
TU168244 other downstream 272535 18703129 ~ 18704677 (-) False G125090
TU168243 other downstream 272660 18701648 ~ 18704552 (-) True G125090
TU168240 other downstream 277410 18695480 ~ 18699802 (-) True G125089
TU168581 other upstream 596256 19595929 ~ 19597521 (-) True G125326
XR_005640980.1 other upstream 753370 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168717 other upstream 790858 19790531 ~ 19796038 (-) False LOC120570223
TU168785 other upstream 921681 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168944 other upstream 1459489 20459162 ~ 20461629 (-) True G125619

Expression Profile