RNA id: XM_039818275.1


Basic Information

Item Value
RNA id XM_039818275.1
length 2770
RNA type mRNA
GC content 0.49
exon number 3
gene id xk
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20724860 ~ 20734285 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACAGCGCCCCGTGCGCCCCCCGCAGACTCTCTGCGGGACAACAGCTGGCTGTGACAACATTCTGCCTGGCACTAAACCGCAGATGAGctgcggcggcggcggcgggtGCCTGAAACAACGCCGTCCTCTGACCGACCGACTGCCCGGTGGAAACGGCATGGATGTGTGGACCGTGAGCGAAGCCACATTCCCCAAATGGCGGAGTGAGTGAGGATGCGACTCCCCAGTTCCATCTTTGTGTCGGTGTCTCTGTTCACGGCCGAGACCACGGCAGCGCTCTACCTCAGCTCCACATACCGCTCAGCTGGAGACCAAATCTGGCAAGGGCTCACGCTCCTCTTCACGCTCGTACCATCTGTGCTCGTGCAGCTGACCCTCACCTTCATCCACCGGGACCTCGGCAGAGACAGACCGCTCGTCCTGCTGCTGCACATCCTGCAGTTCGGACCCATCGTCAGGTGTCTGGAGGCGTTCTGTATCTATGGCAGCGTGGGCCGCGTGGAGGAGCCGTATGTCAGCATCACCAGGAAGAAGCAGATACCTCGCGGGGGTCAGTCTGAGGAGGTGGAACGGCAGGTGGGGCAGGCGGAGGGGAAACTGTTTACACACCGAGCAGCCTTCGCCCGCACCTCTGTCATTCAGGCCTTCCTGGGATCGGCCCCCCAGCTCACCTTGCAGCTCTACATCTGCATCCTGCAGCAGGGGGTCTCCATTGGAAGAGGCACACTGATGGTGATCTCCCTCCTGTCCATTGTGTACGGAGCGCTGCGCTGCAACATCCTGGCCATTAAGATCAAATATGATGACTATGAAGTGGACGTCCGCCCCATGGCTTATCTGTGCATTTTCCTGTGGAGGAGCTTTGAGATCGCCACTCGTGTGGTGGTTCTGGTTCTGTTCAGCTCTGTGCTGCAGCTCTGGGTCCTGCCCGTGGTTCTGCTTAACTTCCTGGTTTTCTTTCTCTACCCATGGATCCTGTTCTGGCAGAGCCACTCTCCGTTCCCTGAGAATATAGAAAAAACTCTGACCAGGGTGGGAACCACCATCGTGCTTTGCCTGCTCACCTTCCTCTACGCCGGCATCAACATGTTCTGTTGGTCAGCTGTGCAGGTGAAACTCAACGACCCGGACCTCATCAATAAGTCCCAGAACTGGTACCGCATGGCCGTGTACTACATGTTGCGTTTTGTGGAGAATgcctcgctgctgctgctgtggttcATCTATAAAACTGACTTCTACAAATTGACCTGTGCCCCGCTGCTGGTGCTGCAGTTGCTGGTCGCCTACGCCATCGCCATCTTCTTCATGTTGGTATTCTATCAGTTCTGTCATCCATGTCGGAGGCTCTTCACCTCCAGCATGACCCAGGGTCTCTGGAActgctcctctctgctctgtctcATGTGCAACTCTGATTCACCACAGAACAGGCCCATAGGAAAGTCACCCAGCCCCCCCACACGCCAAGAGACGGCTAATGATGGAGCCCACGACACAGCCAGCGACACCACAGACGACATGCCTAATGAAACTATGTATGACATGCTCAATGATACAACAATCTACGACACAACTAATGAAATAGGCAATAATATATGTGACGGAATCAATGGGGACATTAACCACAGTGATTAAGCAACGCTTAAAAGCATCACAACCGTTTGACGTGCCATCCAGAGAAGCAACGGATAGATCACACCCTCTGTAACCTTTTAAGTGCCACATGAGTCCTTCCGCGAGTTGAGTTTACACTTTGAATCCTTTCATATATCCATCTCAACTCTGTTTTCTACCACTGTCTATTACTCGTACATGAAGCAAATGTGTCCTTAACTGGAGATGTATTCTGGCTGCAAACATGCATAGTGTTCACTTGTGTGCAGAAGCAGAACAAGTGGTGCTCAATTGTCTCATCAGCCAACATCCCAACCTATCATCCTGCCGCCTTTAATACAAAGaaaaacacggacaacaccGTTACTTCTTTAGTTTTGGAGACCACTTATATGCTGCATTACTGATCACAAGGCGCCATGCATTTAAATTGATTGTATTTAATAGTGGCATggaggtgtgcatgtgtggagCCTCAGAGATGAACTTTTTCggaggcgggggggggggggtcatgggGGTCTGTTTTGTATAGGTTTGTTTTCTGAACCCCCCTCTAGTTTTATGGCTGCAAGCAATCAGCCTTTTTACTCCTTGATAAGAGCTTTATCATTAATACGCACTGCTTCTGTGATGTATATGTGCTTGACGATAACATGTGAATCTCCACACATAGTTTAAAGAGCCCGTTTGATCACCAAACACGCTAACGTGTGTAAAGCATGACTTTGGTTCAAATGTTGAGCAACAACAGCTGCAGTGATGTGAAATGCTTTGTTTGGatgtatttgcatttttctAATTCACGCTTGTCtgtcagctctgtgtctgtttgtctcatTAGTTAGAATATTTACACACAAATTGTGTGCACACAAAAATCGATTATATCCAATTGAAAAATGTCTGGAATTGTTTGCTTATTTTCAACCTTTAAAtgtataattgtgtgtgtgagagagagaatgtcagtgtgtttgtttttgcaccTACTCCTTTTTGCAATATATCAGCAGAGGGATGAAAACCTCGGGTATCAAATGAATGCTCCTAATGTTTGTACAAATAAGATAAgccaaaaaaatgtgaaaaatctaTTGTACACATTGGATATTCTCATAcagagcaaaataaaaaaaggtatttaaaaaat

Function

GO: NA

KEGG:

id description
K19522 XK; membrane transport protein XK

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169089 lncRNA upstream 11666 20712406 ~ 20713194 (+) True G125718
TU169071 lncRNA upstream 37813 20686697 ~ 20687047 (+) True G125702
TU169062 lncRNA upstream 45784 20674585 ~ 20679076 (+) False LOC120570651
XR_005641097.1 lncRNA upstream 46888 20672629 ~ 20677972 (+) False LOC120570651
TU169119 lncRNA downstream 60760 20795045 ~ 20825545 (+) True G125738
TU169132 lncRNA downstream 98209 20832494 ~ 20835754 (+) True G125749
XR_005641074.1 lncRNA downstream 169709 20903994 ~ 20911358 (+) True LOC120570516
TU169214 lncRNA downstream 176538 20910823 ~ 20911178 (+) False LOC120570516
TU169228 lncRNA downstream 219452 20953737 ~ 20958039 (+) True G125826
XM_039817120.1 mRNA upstream 14160 20707241 ~ 20710700 (+) True asb11
XM_039818880.1 mRNA upstream 18856 20699231 ~ 20706004 (+) True piga
XM_039817758.1 mRNA upstream 75694 20641212 ~ 20649166 (+) False gabpa
XM_039817759.1 mRNA upstream 75694 20641400 ~ 20649166 (+) True gabpa
XM_039818459.1 mRNA upstream 170506 20544377 ~ 20554354 (+) True sik1
XM_039818569.1 mRNA downstream 4507 20738792 ~ 20774655 (+) True sytl5
XM_039818570.1 mRNA downstream 4507 20738792 ~ 20774655 (+) False sytl5
XM_039818571.1 mRNA downstream 4508 20738793 ~ 20774655 (+) False sytl5
XM_039817062.1 mRNA downstream 75033 20809318 ~ 20813381 (+) True otc
XM_039817059.1 mRNA downstream 79202 20813487 ~ 20823161 (+) True gpr161a
TU168970 other upstream 203586 20492178 ~ 20521274 (+) False G125627
XR_005640959.1 other upstream 459622 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other upstream 459712 20174828 ~ 20265148 (+) False myo16
TU168229 other upstream 2020332 18703028 ~ 18704528 (+) True G125079
XR_005640963.1 other upstream 2707447 18010757 ~ 18017413 (+) False hnrnpa3
TU169140 other downstream 118804 20853089 ~ 20858910 (+) True mpc2b
TU169142 other downstream 125867 20860152 ~ 20865442 (+) True G125757
XR_005641085.1 other downstream 885063 21619348 ~ 21627452 (+) False sox1a
XR_005641000.1 other downstream 920846 21655131 ~ 21688802 (+) False LOC120569986
TU169945 other downstream 2072908 22807193 ~ 22815102 (+) True G126363

Expression Profile