RNA id: XM_039818296.1


Basic Information

Item Value
RNA id XM_039818296.1
length 2360
RNA type mRNA
GC content 0.53
exon number 3
gene id fign
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16492362 ~ 16515624 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATTCCAACATGGCAGAGGCTGTGGTCAGTCTTCCCCTCACTAACTTGGAATGGTTTCAAATCGCGAGCAGCCGCGCTTAACCTGAGCGAACCATTCATCTGCGCACTCACCGGATCGATGGCACTATAAAACCCTGACGCTGCCCGGGCACCTACACAGGCTTGAAGACATGATCACTAGCACCAGTATTTATGGTCTAAAGATGCAGTGGACCCCAGAGCACACACAATGGGCAGAACAACACTTTGACATCTCATCCACTACCCGCTCGCCAGCACACAAAGTGGAGGCCTACCGGGGGCACTTACAGCGAACATACCAGTATGCATGGGCAAACGATGACATCTCTGCGCTGACTGCCTCCAATCTGCTTAAGAAATATGCAGAAAAGTACTCTGGGATCCTAGAGGGCCCAAATGAGAGAGCCCTGCTGTGTTCCTACTCTGATAGCACCACTGGACTCATGAATGGACGAAAGTCAGAGAATGAGTCCTGGCAGGAGGGGATTTACCCAATGAACTGTGTTCCAGATGTTATATCTGTGAGCAAAGCTGGAATGACAGCTGCCCTACCCCCTACAGATGTGTCGGCTAGCATAGGCAGCTCCCCAGAGGTTGCCAGCAGCTTGTCTGAGCCTAGCTATTCCAGCAGTAACTGTGGAAGCCACACAGCCACTACGCTCCACTCGGGCCTCCCCTCTCAGGAATATACTGCCAGCTACAATGGCTCCTACCTGCATTCTAGCTACAGCAGCCAGAGTACCCCAGCCCTCCCCTCCCCACACCCCTCTCCTTTGCACAGTGCTGGGCTTTTACAACCAccacccccacctcctccccctACCTTAGTGCCGAGCTACAATGCCGGGTCTCCAAACCTTCCCAACTACAATTATCCTCCAACAGGGTATCCTTCTCAGAATGCTGTTGGCCCTGGTTATAGCCCTGGGGGAGCACCCCCTCCTTCTGCTTATCTGCCGTCCGGTATTGCAGCTCCTACACCAATCCCTCCTTCCACACTGCCCGGCTACACCTACCAGTCCCATAACCATACACCAATTGCACCAACACCTTTGAATGGCAGCACATCCAACTCATTAAAACGAAAAGCTTTCTACATGAGTGGACATGGAGATATGGACTCTAGCTATGGTAATTTCACCTACAACCAACAGCGCTCTTCTCAGAGCCCAATGTACAGAATAACGGACAGTGTCTCAGACTCAAACAGGGGCAATGGCTTTGACAGAAATGCTGAGGCGTCGTCTTTATCGTTTAAGCCAACTAAACAGCCAATGTCTTCTGATCAACACAGAAAATTTATAATACACTCTGGCAGAGCACTGACTCCTCCATCCTATGGATCGACCAAAAGCTCTGTGGGTGATCTCAGAACTGGTGAGCCCTACAGCAAGTTTGGATCTTCAATCATGAGCGAGCGAACTGAAGAGCACAGACAGCACCTCTCTCACTCCCTTACAGGGCCTGACATTGGTACAGCTACCTCGTCCATCCATGCTGCGGAGGAACAACTGAAGAACAGTGACTCCAACCTGGTGGAGATGGTGACCACAGAAATCCTTCAGCAGGGCCCTCCAGTGGACTGGAGCGACATCGCGGGTCTGGATATGGCCAAAGCAGCCATCAAAGAGGAGATACTATGGCCCATTTTAAGGCCAGATATGTTTAGTGGACTTGCCACATTACCTCGGAGCCTCCTTTTATTTGGACCTCAGGGAACTGGTAGAACGCTGCTGGCCCAGAGCATGGCCAGCCAACTGGGGGCTGCCTTCTTGCGACTCAGCAGCTCAGCTCTGGTGACCAAGTGGCTAGGGGAAGGGGACAAGATCATCCAAGCTTCTTTCTTGGTGGCCCGGTGTCGCCAGCCAGCAGTGGTGTTCATCAGAGAGGTTGATCTGCTGCTGTCAGCCCAGCTCAGTGAGGAGAGTCCAGTGAATCGCCTCAAGGCTGAGCTCCTCATGCAGCTTGACAGTATTCTGACCTCTGCTGAGGACCATGTCCTcgtggtctgctccaccaataAGCCTGAAGAGATCCCGGAGTCCCTACGGAGGTACTTTGCCAAGCGACTGCTCATCCCGTTGCCTGATGGGACAGCACGACACCAGATAATCAGCCAACTGCTCTCACAGCACAACTACTGTCTTAGTGACAAAGAAATGTCACTACTGGTTCAGAGGACAGAGGGCTTTTCTGGACTGGACGTGGCTCAGCTGTGTCAAGAGGCTGTGGTAGGTCCTCTCCATGGCATTCCTGGAGCTGACCTGTCAACCCTCCACCCCACTCAGATGAGACCGGTCTCCTACGAAGACTTTGACAATGTGTTTTGCAAAtcccca

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0005524 ATP binding molecular_function
GO:0017111 nucleoside-triphosphatase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167261 lncRNA downstream 3866 16487830 ~ 16488496 (-) True G124382
TU167243 lncRNA downstream 90332 16401758 ~ 16402030 (-) True G124366
TU167229 lncRNA downstream 110668 16381357 ~ 16381694 (-) False LOC120570068
TU167223 lncRNA downstream 134478 16345288 ~ 16357884 (-) True G124350
TU167219 lncRNA downstream 169705 16322485 ~ 16322657 (-) True G124346
XR_005640965.1 lncRNA upstream 106319 16621943 ~ 16622411 (-) True LOC120569756
TU167376 lncRNA upstream 248031 16763655 ~ 16776734 (-) True G124463
TU167428 lncRNA upstream 367810 16883434 ~ 16884174 (-) True G124503
TU167465 lncRNA upstream 394547 16910171 ~ 16924563 (-) False G124539
TU167467 lncRNA upstream 403721 16919345 ~ 16931466 (-) True G124539
XM_039818467.1 mRNA downstream 49192 16403562 ~ 16443170 (-) True LOC120570230
XM_039818444.1 mRNA downstream 91196 16390041 ~ 16401166 (-) False ifih1
XM_039818443.1 mRNA downstream 91196 16390041 ~ 16401166 (-) True ifih1
XM_039818294.1 mRNA downstream 102468 16381250 ~ 16389894 (-) True LOC120570068
XM_039818445.1 mRNA downstream 111712 16378488 ~ 16380650 (-) True gcgb
XM_039818447.1 mRNA upstream 47118 16562742 ~ 16596820 (-) True grb14
XM_039818448.1 mRNA upstream 47118 16562742 ~ 16591465 (-) False grb14
XM_039818449.1 mRNA upstream 47118 16562742 ~ 16579537 (-) False grb14
XM_039817805.1 mRNA upstream 81297 16596921 ~ 16605484 (-) True LOC120569755
XM_039817806.1 mRNA upstream 137236 16652860 ~ 16658039 (-) True slc38a11
TU167228 other downstream 111597 16378609 ~ 16380765 (-) False gcgb
TU167157 other downstream 390769 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 1075090 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 1498573 14984485 ~ 14993789 (-) True G123960
TU166600 other downstream 1702456 14784561 ~ 14789906 (-) False G123886
TU168094 other upstream 1597486 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 1597886 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other upstream 1597948 18113572 ~ 18115089 (-) False LOC120569287
XR_005640956.1 other upstream 1641108 18156732 ~ 18163749 (-) False prkra
TU168240 other upstream 2179856 18695480 ~ 18699802 (-) True G125089

Expression Profile