RNA id: XM_039818297.1


Basic Information

Item Value
RNA id XM_039818297.1
length 1232
RNA type mRNA
GC content 0.53
exon number 11
gene id LOC120570071
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16974305 ~ 16985139 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

agcaacagcaTCCCAGCCCAGTCCCTACAGCTCCTCCATCTGCACAGCGGAGCTGGACGGACCAGCCAGAATGTGGAGAGCACTGCTACTTCAACTCTTTCTCGTCTCCATATGTTGTGTAAGATGGTGCAACTCTGAAGGATGCGAGTTGGGGCAGTTCCGCTGTGGGACAGGTCGATGTATACCAGGTGACTGGCACTGTGACGGCACATCAGACTGTGTGGATGACTCTGATGAACACGACTGCCGTATCATGCGATCACAGTCAATTCCAGTGTTTGAGTGACGGCGAGTGTATCCCtgatgtgtgggtgtgtgatgaTGAGGAGGACTGTGAGGATGGCTCAGATGAGAGGCAACACTGCCCTGGAAGGCCGTGCACCAGTGGCCAGTTCAGTTGTAGTAACAGGGCATGCATCCCAGGAGAATACAGATGTGACCGTCTGGCGGACTGCTCAGATGGGTCTGATGAGAGAGACTGCCATTACCCCGAGTGCACACAGCTGAGGTGTGCTAATGGGGCCTGCTACAACCGGACCCAAAGATGTGACCAGATGCTTGACTGTCGTGATGGCTCTGATGAGGCAAATTGCACACAGCACTGCATTACGGGCCTGTTCCCGTGTCATAACGGGGTGTGTGTTCCTCAACGCTACGTCTgtgaccatgacgatgactgtgGAGACAGAAGTGATGAGCTGAACTGCACATATCCTACATGCAGAGGGAACTACTTCACCTGCCCCAGTGGCCGCTGTATCCACCAAGTCTGGGTTTGTGATGGAGAGGATGACTGTGAGGACAATGCAGATGAAAAAGGCTGTGATAATGTACCGCGGGAGTGTTACCCAGGAGAATGGCCCTGTCCATCCTCTGACCTGTGTATCCCCATGGATGAGCTATGTGATGGGAAAGCTCACTGTTTTGAGGGAGAGGATGAAACTAACACCACTGCTGGGCGCAACTGCAGTATCTGGAGATGTGCCTCTCTGAGCTGTGAGCATCGTTGTCATGCTTCCCCTGATGGAGGGACCTGTTCTTGTCCTTCTGGATACATTGTCAACACCAACGATAGTCGCTCATGTATAGACTTTGACGACTGTTCGATGTGGGGTGTCTGTGACCAGCTGTGTGAGGACCGCATAGGCTCCCATCGCTGCAGCTGTCGAGAAGGCTACACCCTGGAGCAGCACAGATACTGCAGAGCTGACGTCTCAACAGTGACCACCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167467 lncRNA downstream 42839 16919345 ~ 16931466 (-) True G124539
TU167466 lncRNA downstream 42839 16925200 ~ 16931466 (-) False G124539
TU167465 lncRNA downstream 49742 16910171 ~ 16924563 (-) False G124539
TU167428 lncRNA downstream 90131 16883434 ~ 16884174 (-) True G124503
TU167376 lncRNA downstream 197571 16763655 ~ 16776734 (-) True G124463
TU167505 lncRNA upstream 41195 17026334 ~ 17027190 (-) True G124561
TU167536 lncRNA upstream 55054 17040193 ~ 17041018 (-) False fastkd1
TU167537 lncRNA upstream 55054 17040193 ~ 17041018 (-) False fastkd1
TU167538 lncRNA upstream 55054 17040193 ~ 17041018 (-) False fastkd1
TU167539 lncRNA upstream 55054 17040193 ~ 17042372 (-) False fastkd1
XM_039818665.1 mRNA downstream 69165 16895676 ~ 16905140 (-) True abcb11a
XM_039818674.1 mRNA downstream 82631 16887828 ~ 16891674 (-) True spc25
XM_039818118.1 mRNA downstream 112079 16833693 ~ 16862226 (-) False stk39
XM_039817651.1 mRNA upstream 50234 17035373 ~ 17040939 (-) True fastkd1
XM_039817654.1 mRNA upstream 64785 17049924 ~ 17058311 (-) False ccdc173
XM_039817656.1 mRNA upstream 64785 17049924 ~ 17054445 (-) False ccdc173
XM_039817653.1 mRNA upstream 64785 17049924 ~ 17054421 (-) True ccdc173
XM_039817655.1 mRNA upstream 64785 17049924 ~ 17054268 (-) False ccdc173
TU167228 other downstream 593540 16378609 ~ 16380765 (-) False gcgb
TU167157 other downstream 872712 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 1557033 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 1980516 14984485 ~ 14993789 (-) True G123960
TU166600 other downstream 2184399 14784561 ~ 14789906 (-) False G123886
TU168094 other upstream 1127971 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 1128371 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other upstream 1128433 18113572 ~ 18115089 (-) False LOC120569287
XR_005640956.1 other upstream 1171593 18156732 ~ 18163749 (-) False prkra
TU168240 other upstream 1710341 18695480 ~ 18699802 (-) True G125089

Expression Profile