RNA id: XM_039818448.1


Basic Information

Item Value
RNA id XM_039818448.1
length 2870
RNA type mRNA
GC content 0.43
exon number 14
gene id grb14
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16562742 ~ 16596820 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gAGTTGTGAGCCGAGGAGCAACGCCAGCCAGCTTGCTCTAACTGTGCTCTGCACACACTCCAGTCTAACAGCTCgtctcttctctctgctccaGATGATGCCTTGGATTTAGCCGGCCCACATGAGTGATATGAATAACACACTGGACGGAATACACACTTCTGGAAGCCTCGGAGAGAAAGCAGAGATTTTACAGGGTGGCAAGGGTAATGTGAGTGGCTTTCCCAGCCCAGCCCTCATCCCTTTGCGAGCTCCTTTACCAACACCAAATGCCCAGAAGATCAGGAATACGCTCTGTAAGGGGAACAGgAGCAATGAAGAGGGAGAGGATTCATTCTCTTCCCCTGTGCCAAACCCTTTCCCTGAGCTTATCACCTCAACCCTCTCCTCCCTTGTCTCTGAATGTTTATTACCATGGACTAAAAGTAGTGCAACTCAGGTAATCAAAGTTTATAATGAAGATAACACCAGCAGGGCAGTAGAGGTTCCCAGTGACATCACTGCCCGGGACATATGCCAGCTGTTTGTCTTGAAGAACCACTGCATTGATGACCACAGCTGGACTCTTTTTGAACACATATCTCATCTGGGAATAGAGAGAACCATTGAAGACCATGAGTCTGTTATGGAGGTACTATCAAGCTGGGCAATGGACACAGACTGCCGGCTGTATTTTAGGAAGAATTATGCCAAATATGAATTCTTCAGGAAACCCCTGGACTTTTTCCCGGATCACATGGTCTCTATATCAAGTGAAGCCAATGGGATGGTGGATCACTCTCAGCTTATACAGACCTTTCTCAACTCCAGCACTTGTCCAGAGATACATGGACACCTCCATGCCaaagagcaaagcaggaagtctTGGAAgaagttttattttgtcctgCGGAGGTCAGGGCTTTATTTCTCCAATAAGGGAACTTCCAAGGAACCAAGGCATCTCCAGTTCATTGCCGACTTCAGTGACAGTGATGTCTACACAGTGTTGTCAGCCAAAAAACTACATGGAGCACCCACAGATTATGGCTTCTGTGTCAAGCCCACAAAGTGTAGTTCAGCCCGAGACTTGAAGTTGCTTTGTGCGGATGATGAGCAGACTAGGACCTGCTGGATCACAGCCATGCGCTTGTTAAAGTATGGAATGGAACTGTACCAAAACTTCATTCAGCCACACCAGAAACAAAAAGCATCCCCAATGAGAAGCATCTCAGAGAATTCACTGGTGGCCATGGACTTTTCTGGCCAAAAGAGCCGTGTGATTGAGAATCCGTCTGAGGCGCTGTCTGTGGCTGTAGAGGAAGGCCTGTCATGGAGGAGAAAGAGCTGCCACCGTCTGAGCGGCCACGGGAGCCCCTCCACATCACAAAGCTCAGTGTCAAACATAGCCCTCCACATGACTCAGTCCTGGTTCCACGGCAAACTGTCTCGGGATGAGGCTCAGCGTCTAATTACTCAACAGGGTCATATCGATGGagTATTTCTTCTGAGGGACAGCCAAAGCAACCCTAAGACATTTGTACTGTCGCTGTGTCACATGCAAAAAATCAAACACTTTCAGATCTTACCTGTGGATGATGAAGGGGAGTTATTCTACAGTCTGGATGATGGCCACACACGGTTCACTGACTTGATCCAGTTGGTGGAGTTTTACCAGCTAAACCGAGGGGTGTTGCCCTGCAAGCTCAAACACCATTGTGCCCAGATCACCCTGTGAACATGGGGACCCAAGAGACCCCCGAGGGCCCAGATGCACCTTAACTACAGGGCCTTTTCTGGACAAACACTCCCATTGTTCTTGTGccttgaagaaaaagaaagatatCCAGACTGAACAGCCATGCTAACTAACTAAAACTACTGTTATCATCCACTATCGTCTACATTCGTACTGTGCTACATGGTCCctccttatttttctttttcaaaacaagCTGAATTTGACAAATTACTGTTGACTGTATAATAACTGGCTACATGTGCTCAAGATGATGTGCACATTTGTCTAGTGAACGTTTTGTGCCCATGTGTGGTGGTAAATCCATTGTGCAAAGTCCAAACATGACTTCTCGTACTGTGTATTGTAGTGCTGAATGTGTACTGCAAACAGCTTTTGATTCTAACAGCATCATGACACTAGTGAAATAAagtagttttttcttttcttattaacATACAGTAGTTTGTAGTTAGTTTAGTTTTCACTAAAACATTTCAATAGAATGTCTTCTGCAGTATGTATACACCTatcatcattttttatttgaaaccATATCATGATGGGAATTATAGTAGCCTACACAACATCTCTTTGAGTAATTTCAGTAAAACTCTATCTTACTTTTCATGTCATTGTATTTCTAAGTATtcaggtattttttttaaagaaaatgattGTTTTCTATTTGAGAGCTAAAATGACGTCTCAGGAAGTGTCACTGTGCATGCTCCTGTAAGCTGGACTGAGACTGTTGTAGAGACAAAAGGAGAGGTAATGTTCAGGTGGAGAGGAATGGCACACAACCTCACTAGCCTGCACtgttcattcattttaaatgtatgtgATTAAATGAAATGTTTGTATTACATGTATTACATTATTGTGAGCTTGCTCTAGAACGAGAGGAGTGAAATATAATTAAATTTTAGATTTAAGCCATGAACATGGAAATCAGAAGTACTGTGTGACTGATTTAAATCATATCTGAATTCAGTGTACAATAAAATTGAGGTTTTATATTTTCCAAAGATTCAGGTATACAGTTTGCAAAACCTGGGTTGCTTGTATTTTGATGCTATTGCCATTGCTGTGGGTATAAAGTGTCAGATATTGCTTGTTTATAAAAGCCAATAATGCATCAGCTTTAAAA

Function

GO:

id name namespace
GO:0007165 signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167261 lncRNA downstream 74246 16487830 ~ 16488496 (-) True G124382
TU167243 lncRNA downstream 160712 16401758 ~ 16402030 (-) True G124366
TU167229 lncRNA downstream 181048 16381357 ~ 16381694 (-) False LOC120570068
TU167223 lncRNA downstream 204858 16345288 ~ 16357884 (-) True G124350
TU167219 lncRNA downstream 240085 16322485 ~ 16322657 (-) True G124346
XR_005640965.1 lncRNA upstream 30478 16621943 ~ 16622411 (-) True LOC120569756
TU167376 lncRNA upstream 172190 16763655 ~ 16776734 (-) True G124463
TU167428 lncRNA upstream 291969 16883434 ~ 16884174 (-) True G124503
TU167465 lncRNA upstream 318706 16910171 ~ 16924563 (-) False G124539
TU167467 lncRNA upstream 327880 16919345 ~ 16931466 (-) True G124539
XM_039818296.1 mRNA downstream 47118 16492362 ~ 16515624 (-) True fign
XM_039818467.1 mRNA downstream 119572 16403562 ~ 16443170 (-) True LOC120570230
XM_039818444.1 mRNA downstream 161576 16390041 ~ 16401166 (-) False ifih1
XM_039818443.1 mRNA downstream 161576 16390041 ~ 16401166 (-) True ifih1
XM_039818294.1 mRNA downstream 172848 16381250 ~ 16389894 (-) True LOC120570068
XM_039817805.1 mRNA upstream 5456 16596921 ~ 16605484 (-) True LOC120569755
XM_039817806.1 mRNA upstream 61395 16652860 ~ 16658039 (-) True slc38a11
XM_039818203.1 mRNA upstream 121287 16712752 ~ 16736786 (-) False csrnp3
XM_039818204.1 mRNA upstream 121287 16712752 ~ 16736786 (-) False csrnp3
XM_039818205.1 mRNA upstream 121287 16712752 ~ 16724384 (-) True csrnp3
TU167228 other downstream 181977 16378609 ~ 16380765 (-) False gcgb
TU167157 other downstream 461149 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 1145470 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 1568953 14984485 ~ 14993789 (-) True G123960
TU166600 other downstream 1772836 14784561 ~ 14789906 (-) False G123886
TU168094 other upstream 1521645 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 1522045 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other upstream 1522107 18113572 ~ 18115089 (-) False LOC120569287
XR_005640956.1 other upstream 1565267 18156732 ~ 18163749 (-) False prkra
TU168240 other upstream 2104015 18695480 ~ 18699802 (-) True G125089

Expression Profile