RNA id: XM_039818452.1


Basic Information

Item Value
RNA id XM_039818452.1
length 4413
RNA type mRNA
GC content 0.44
exon number 12
gene id zgc:152951
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 12936975 ~ 12947546 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GAGCACCTGAAGGCATCATAAGACAAGATAGCTAGCTTAACCAAAGCAGCTAGCTAATATGGGCTAGCCTGCGCAATGATGATGTACTGCCAGTGCAACTGGGACTAGGAGCAGAGTTTTAAAATTGTACTGCCGAATTACGCAAGGGAGTCAATCGCCAAAAGATGGAGGAGTTTGACAGCAGTGCACTGGGCCGTGTAACGGTGTACTCCATCCAGGGCTGCCCACACTGTGTGCAGGCCAAAGCCACCCTGGGGCGTTTGGGAGTACCGGTATGTGATGTGGATGTAGGAAGGCATCCGGAGCTAAGAGCCAGAGTGAAGGAGTTGACAGGACGCAGCTCGGTCCCTCAGATCTTCTTCAACAACATTCATGTTGGGGGCAACGATGACCTACAGAAACTGGCTCCTGAGGAGCTTCAGAGGTTGGTGAATGTGGTCAAGAAAGAGCCTCTTCCAGCAGATGCTCCGCCACTACCAGACGAAAATCAACCAGAGGACACGGCCGGGGAGACTGATGGAGagtgtatgtgtgagagggATGAGTTGGCGGACGTGGTAGAGGACCTGAAACATGGCACTGTGATTGGCAGTCATAGGAGGGGACTGACCTTGTACAAAAAGAGCTTCTCAGGTCATCAACTGGTTGACTGGCTGCAGAAAGAGAAGGGCATGGCCAGTGCTGAGGCCTGTAATACTGGCCAAGCATTGTTGCAGAAGAAGTACATGGTCAGTGTGCGTGGCTGTGGGCAGCAGGATGGCAGTTTTGGAGAAGGGAAAGACACACTGTACAGGCTGCTGGAGGATGACCCTCATTCAGCCCTCAACGCAGGACAGACGGCAGCCTGCAGTCCCATCCAGGctgctgAGCTCTCTTTGCTTGTACGGGAGTTGATTTTGAAATTGTTCTCCGAGCATCTCTCTGCTGATGGCAAGTCTGTGGACTACAAGGGCATGTCAGTCAACCCTGCCTTTGAGCGTTACTGTGAGCTAGCCATTCAGCTGCAGAGGGTGGAGCTGCTTTCACTGAGTCGAGAGGAGAAGCTGGCCTTCTTCATCAACATCTACAATGCCTTGGTCATCCATGGGTACCTACGCCTGGGGGCCCCCACCAACATGTGGCAAAGATACAGGTTCTTCAACTATGTGAGCTACCTGATTGGAGGAGAAGTGTTTACATTACAGGACATTGAGAATGGTGTTCTGAGAGGGAACAGAAAAGGTGTCGCACAGCTTCTAAGGCCCTTCTCCAAAACAGACCCACGACTACAAGTGGCCCTTCCGGATGCTGAGCCTCTCATTCACTTTGCCTTGAACTGTGGCGCAAAGGGCTGCCCACCAATTAAAACATACACTCCACAGGACATTGACAGCCAGCTCCGCACAGCAGCTGAGGCCTTCCTGGAGAATGACGACGCCTGTATGGTGGATTCTGGGAAAAGAGAAGTGCGACTCAGTCAGATATTCAAGTGGTACAAAGCTGACTTCGGAGGAACTGATGAAAAGCTGCTGAAGTGGGTGGTGGAGCACATGGGGGACTCTCCGAAGAAGACCAGCCTGCAGGGTGTCCTTTCTGCTGGGAAGACCAAAGTCAGCTTCCTCCCTTATGACTGGAGCACCAATAGCACCCACTGAGCACGCCCGCACCAACACATTCACGTCCAGCTATATGCTACGTCTCTTTGCATTTGTCCCCTTTCTACCAAGCTGCATCTACTTAAAAACCAGTAGGTTGGTGATGACGTGCTTGCCAAATGCAATCCACTAGTCCTCAACcatgcaaatgtttattttttatttttttttattttaaatgcgaAAACAAACTGTAAATCCAAGAGGTGATAAGTGGGGCATTTGCACTGTACCATCAAGTCCTACTTCTCTTGTAGGCTTATCCTAGCTTTAAGTTCTTACTGTAAGCTCAGATAACTTCTGTTTGGAAGTCTTAACTGTATATGAGTTGTACACTCAAATTGTATTGGTTTGAAGTAACAGCAGAGAGCCTATTATAAAAATCAAGCTGCACACAGAAACTTTGTACTGCAGCAGCATAAATTAATAGGATGAGCTGCACATTAAGCGTGTTATTGACTTCTGTTATTACTGTCCTTTTGTAAAATGTCAAAGCCCGAAAATTGACAGACATTCCCCAAATTATCTTAGAGTAAATGAACGCGGAGAAAGCTAACCAAAAGCATacttaataatgataataataataataacatttatCAATATGGCTTCCATGCTCTCCAGTCCTTGTATTTACACTTGTCAGCAACTCAGGAGTCCTAGATTATCACAATCTTCTCGGTTCAGTACAACGCTCGTCGGGCTATTTACGTGGAGCATTTACTCCGAGCAGATGGAGATGATACAAACACACTGCCTTGACAAGCCATATCAGAACCCTTTGAACTTACCAAACCCACTCATTCATGTTAAGCAGGCTGCAGATTCTCCACCAGGCTGGTCCATCATTTAACCTGCAGATGTAGACAAGCGGACCTGGTTTTCTACAGGGAGAACGAGAGTAACAGCTGTTGCACTTTGCAACACTAAATGCTAATTGAACATTAGTATATCATCCCATGCCGTGGTCATTAAATACTAAAATATAAACACTACTTTGCTCGTGGCTGTAAAACACGAGATGTTAGCCTTTAGAAATGTGTAATTTATTTCCTTTCCTAAACATCTATGACCCAGGTGTTAAGCCCTTTTTTCATTGGACAAACAAAATCTGGCTAGGTGCTGCTATGGTCACGTGTCTTGCCAATCGATTGGCGCAGGTCGGACTGGAACTGTAGCGCGGTGCGGTGGCTCTGAGGGGGCTGTATCCTCTGAAGCCCCCCCGTATTTGTAGGATCCGGTCCCTGAATAAGAAAAGAAAGTGTTACTCGTTTAGAGCGCACAGACGGATGCAGCGCTCCGACTTTTGCATGTCTTGATCAGGTTTCATTtctaacccctccccccctAGTGGCGTTTTGTTTCTCCCTTCCTTCACGTGAAGCTACATGGTTGTCCACCCATCTTTACGATCCAGGTCTTCCATTTTAAATCGGAGAAGTGCTACTGCTGTATTTTTGGCACAGTTATTTGGTAAAAGATAGAGTTAATATTTTGAATTATAGAAATATGTATCAAAACGTCACCCCTTTGGGATGCACTCTGACACTTTGCATGTTTATCACTAACTTTGAATGCTGTTGAGacatatttatacttttttcacaaagaaaatgttcCCTGTTGGTCAGTAGGAGAGTACTGGGCTGTGTTTATTTATCCAGCTATTTCCAGGGAGTCTGCAGAAACTTCATTACCCAAATCAGTAGTCATGGAAACAACTAAATGTAGCAGTTTTAAGTCTTGATTAGAGTTTGCAGGTTTTTGGTGTGTTGAGTTTCTGCCTACAAAACTGTGCAGgatgcttttcatttatttttcccgACATTTTATTAGTTTCCATTTTACCTGGCCTTAAACGTTTGtaagacttcatttaaaaataaatcttccAGTGTGATGGACACACATTAAGTGCATATAATTACTCTATATGATTATAAGGATTGTGTGTGGCTTAGAAGAACTATTTAAGGGCCTTTCTCTGTTTCCATAATTCAAGGATTTTCTTATCTCAGGTCAAAGGAAAATGTATGTGAGTGAAAACGATATTAAGTTGTTTGATGTCATCGATGCACTCTATGCTGCATGTTGTGTTTTTAACAATTTCAACTCTGTCTGCACAGTCCATATTCCTTTGCCCAGACATTGTGTCATGCACATTACTATAACTGTCAGGATTCTTTGTCCTTAAGCGATAAGCAGCACCAAAGCATATGGTTAAATTAGCATGTGTTAAAACTGGAATGCATTTTGCTGCATGAGATACCGGAAAACTTCCCAATCTTGAATGCTGGCCTTTAGCAGGACTGCCTCTCTTACTGCTTCGTATCAAGCCTGTAAACTCAGCCATAAGAAATATTAACACGTAGCCCCCAATTAGACAAATAAAGTGTCAGTTATACCCTAATATTGGAATACAATATGTGCAATAGACTTAAAACATCTGACTGTATTTCATCTGTCAATACATTTATTCAGTGACAAGTGCACCCTTGGCTTCGCTACACTCAATTCCATTATTGAGtgactgagaaagaaaaggggaAGACATTTTGTGGGCTAaaatggacagaaaaaaaaggttttatttacATATACTATTGATCCCTGTACTTTTTCAAAATGACCTCATGTATCAGGAAAAAGTGATGCaaaaagttttttaaacaaGCAGTTCTATTTATTTCCCTCTTTCCTGGGGTTAACAATAAAGCAATATGTTTATGAATAGTAAATATGCAATGTtgaactaaaaaataaaatgtatgagtTTGTC

Function

GO:

id name namespace
GO:0045454 cell redox homeostasis biological_process
GO:0035556 intracellular signal transduction biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0009055 electron transfer activity molecular_function
GO:0015035 protein disulfide oxidoreductase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166126 lncRNA upstream 75152 12861554 ~ 12861823 (+) True G123505
TU166112 lncRNA upstream 259563 12677109 ~ 12677412 (+) True G123494
TU166111 lncRNA upstream 260849 12675926 ~ 12676126 (+) True G123493
TU166109 lncRNA upstream 272504 12664001 ~ 12664471 (+) True G123491
TU166093 lncRNA upstream 333368 12603396 ~ 12603607 (+) True G123479
TU166271 lncRNA downstream 424802 13372348 ~ 13377140 (+) True G123634
TU166366 lncRNA downstream 766664 13714210 ~ 13715962 (+) True G123714
TU166373 lncRNA downstream 822133 13769679 ~ 13769942 (+) True G123721
TU166380 lncRNA downstream 946734 13894280 ~ 13896128 (+) True G123725
TU166386 lncRNA downstream 1214136 14161682 ~ 14162642 (+) True G123731
XM_039817398.1 mRNA upstream 304506 12625974 ~ 12632469 (+) True stx19
XM_039818745.1 mRNA upstream 675718 12253104 ~ 12261257 (+) True LOC120570413
XM_039818743.1 mRNA upstream 675718 12253421 ~ 12261257 (+) False LOC120570413
XM_039817935.1 mRNA upstream 751369 12184466 ~ 12185606 (+) True tmem223
XM_039819133.1 mRNA upstream 823712 12060670 ~ 12113263 (+) True LOC120570655
XM_039818492.1 mRNA downstream 90278 13037824 ~ 13048644 (+) True pou1f1
XM_039817132.1 mRNA downstream 129192 13076738 ~ 13079755 (+) True vgll3
XM_039818979.1 mRNA downstream 157683 13105229 ~ 13121650 (+) True LOC120570582
XM_039818980.1 mRNA downstream 157683 13105229 ~ 13121650 (+) False LOC120570582
XM_039818722.1 mRNA downstream 229791 13177337 ~ 13270891 (+) True LOC120570402
TU165581 other upstream 2318279 10607484 ~ 10618696 (+) False lrp1bb
TU165424 other upstream 3008084 9926817 ~ 9928891 (+) False umps
TU165423 other upstream 3012135 9920711 ~ 9924840 (+) False umps
TU165208 other upstream 4140229 8795453 ~ 8796746 (+) True G122846
TU164880 other upstream 5787936 7146625 ~ 7149039 (+) True G122588
TU166170 other downstream 102212 13049758 ~ 13279866 (+) True G123539
TU166270 other downstream 405760 13353306 ~ 13354085 (+) True G123633
TU166312 other downstream 688040 13635586 ~ 13677346 (+) False cps1
TU166397 other downstream 1285786 14233332 ~ 14234070 (+) True G123742
XR_005640926.1 other downstream 2190931 15138477 ~ 15155886 (+) False trpm2

Expression Profile