RNA id: XM_039818455.1


Basic Information

Item Value
RNA id XM_039818455.1
length 3258
RNA type mRNA
GC content 0.52
exon number 3
gene id gpr39
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 4718956 ~ 4763162 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GACCTAATGTGGAACTGCCCTGCCCTCCTaggtggggggggaggaggaaaccTGTGCGAGTGCAGTGTTGGTTAACACTTTGCTCAGACTATATGGTGAAACCAACCTGAGCCTGGACTGAAAACCTACGAGGACTCTCGGGGATCCCAGAGGATCATCAGGTAGCCTACCGGAGGAGGAGATGGGCCAGGCCGGGAACCACATCACactggactttttttttggcGATAGGAGGACACTGAATATTTGAAAACATACCAGAAACTTAAAAAGTACAGACGGATCCTCACATTCTCTAACTGTAGTGTCATGAAATGTTCCATCTGCTGTGATTTGGAGTTCACCACCCGCTGGGATACTCTCCTTGAAGAATCAGACAGTGTTCCAGACTAAGAGAAGTGGGCAGTGTTAAGTTATCTCGGAAAAAGGCTCACTTCTGGCTCTAATCGCAGAGACTTCACCCAGCAGAACTGATAAGCTaaagggaagggggggggggaataatcAATATCTGTGGAAATCTGAGCTCCCCACTCTGTGACCATGAGTGAGAAAGAACAGAAAGACTGGCGCGAACTTGAACCCACCTACCCTGTCAAAATCTTCCTGACGGTTCTGTACAGCCTCATCCTGGTGACGGGCATCCTGGGTAACTCGGTCACGATCAGAGTGACCCAGGTGCTGCGGCGTAACGGCTACCTGCAGAAGAACGTGACCGACCACATGGTCAGCCTGGCGTGCTCGGACCTGTTGGTCCTGCTCATCGGCATGCCGGTGGAGCTCTACAGCGCGATCTGGTTCCCGTTCACAACCGAACAGGGGGACGCTCCGTGCAAGATCTACAACTTCCTGTTCGAGGCTTGCAGCTACGCCACGATCCTCAACGTAGCCACGCTTAGCTTCGAGCGCTACGTCGCCATCTGTCACCCGTTCCGCTACAAAGCCTTGGGGGGCAAGCGCACCTCCGTCCTCATCACCTTCGCCTGGCTGGTGTCCGTGCTCGTGGCCCTGCCGTTGCTGATCGCCACGGGAGCGCAGGGACACATTCCCCTCCGGGCGGACGCCCCCGCCCAGGATCTGACTTTCTGTACCAACCTGCGGGAGCACTGGGTGATGTACAGGGTCAGCATCTTCGTGGCCTTCATCGTGTACATGGTCGTGCTGATCGGCGTGGCCGTCATGTGCTGGGCCATGGTCCTGGTCCTGCGGAGACCTTTGGGAGGTGCGGATGGCGGCGGCGGCATCAACGGAGCTCAAGGAGCCGCCAAGCACGAAGATTCAAAGGCCAAGACAGCCAGGAAGCAGACCATAATTTTTCTTGCACTGCAGCCTACAGTGGGAGACGGTCCTGCAGATGACCGAGAGGGCGAGTCTCATCGTGGGGTCCTTGATGGTGTGTTGGCTTCCCAACCAGATTCGTCGTCTTATGGTGGCTGCCGTGCCCAAGTCCGACTGGACTATTACCTTCTTCCGGAGCTACGTCACTCTCCACCCTGTGGGCGACTGCTTCTTCTACCTCAGCTCCGTGCTCAACCCGTTCCTCTACAACCTCTCCTCCAGACAGTTCAGGGAGGTTTTTGTCCAGGTGCTGCGGTGTCGCCTCACCATCGAACACGTCAACAAGCGCACCGTGCGCAGCTCCCACCCCGCCTCCGCGCGCTCCCTCCATCCCCTGCTGAAGTCGTTTCGTCGCAACAGGGCCAGCCACCCAACCCTCGCAGAAGGGAAAACTCATCCCACCCTTACAACCATTCAGAGTCAAAGTGACTCAGGAGTGGCTTCAAATACTCTTAGCCTGACCGAAGAGTCTGACTCAATTCTCcaaacaaagacagatgtaCCATCGGAGAGTGAAGTATAATGTGCTGTACAATTTAATGCAACAAAAGTGAACAGTAAAAACAAGTGAGGGATGCTTGTGCTGTGCTATCAGAAACAAATAAAGAGATACTCCTTATACACAGTAAACACAGTACAAAGTGTTAATTCTGGAATTTCACTAACGGATCACGATCAGCTGACAATTTGGCACAATAGCAAGCTTCATGGGACTCCTCAAGTATGAAATAGTTATCAAGTCACAAAGTGATACACACAAAAAGCTCAAATATTCAGTTAGCATGAAGACCCTTGCCTGGGTCCAGACCTTTGAATCCGCCTACATCCCCCAGTTGACTTGATTTGTCTGGCATTGTGATGTGAAGTGGCGGTTTGTCGATTGACAAACGTTCGACCCAATGAGCGCCGCTGGGGTACTAACGATCGACCCGATGAGCGCCGCTGGGGTACTGACGACCCAATCAGCACCAGGGGTGGGACTAACGCTGTATAAAGCGTTGTCAAGCTGTGTTTACATAGACAGCATGTCTTTCAATATCTCCCAACATCGTATTTTGTTGTTGCTTCGCTTCGCTCCACTAAAGGAAAACTTTGCCGATCCTCAACCAGCTCTTATACTGTATTAGTACATGCATGTGGAAAAGTTTGCGATGTGTTAACCTGCAGACCCCTGCCAGtgagtaaagttttttttacactagacgcatccaaggtggtgcgcgccatcgtgacgtcaaaatgacgtaataTCCTGCCGGCGCGCCCGATTTATGGCGCGCGAGCCGAGGTCGCGCAcagctctttatttattttttttttcagtggtgCGCGACAGAGCCGAAACGAGTTCGCCGACAACCAGATGCTAGGACTCTCccagtgactgcaagtctctcatGTAAACTTACTGCGTTAAGATGAGTTATTTTATggcgaatgaaaggcttgatccgacaaAGTAGCtcatcgaatcaaatcgaagcattgacggcaattctgccagttctgccattgtttacctttttcttcttctagtccgtagaaagagcaacgtcggtagcctttgctcattagcgccaccgctgttcaggagaagactgcaactagcgTCGCGAGCACCAGCGCGGGTATAAATACTCACGGcgatcccatgacgtcacatttgtacGCGCCAGCTGGGCTGTGTCTAGTATAGAAGACGCTTAAGTGGGGAGCTGTGGGCGCGCAGGCAACACGGAGGGACACACCGtttatctgcacacactgcccacactgcAATGACACAAAGCTGGTTGAAAATTGGTAGATTTTCACTTAAAAACAACGGCAAAACCAGTATGTTGGATTGGTTTACCATCAGTGTGGAATACTGATTGGTTAGGAAAAAATGTAATCCTGGTccgcgattaaaaaaaaaaa

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K08412 GPR39; G protein-coupled receptor 39

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164235 lncRNA downstream 3389 4715187 ~ 4715567 (-) True G122095
TU164232 lncRNA downstream 6271 4712471 ~ 4712685 (-) True G122092
TU164229 lncRNA downstream 8023 4710692 ~ 4710933 (-) True G122089
TU164228 lncRNA downstream 9349 4708977 ~ 4709607 (-) True G122088
TU164227 lncRNA downstream 28826 4689820 ~ 4690130 (-) True G122087
TU164243 lncRNA upstream 2265 4765425 ~ 4765641 (-) True G122103
TU164311 lncRNA upstream 8013 4771173 ~ 4772386 (-) True G122155
TU164316 lncRNA upstream 10828 4773988 ~ 4776306 (-) True G122157
TU164328 lncRNA upstream 50003 4813163 ~ 4815383 (-) True G122167
TU164344 lncRNA upstream 75244 4838404 ~ 4841642 (-) True G122178
XM_039818650.1 mRNA downstream 152840 4526200 ~ 4566116 (-) True c12h2orf69
XM_039817217.1 mRNA downstream 309307 4402396 ~ 4409649 (-) True tyw5
XM_039817223.1 mRNA downstream 428009 4287338 ~ 4290947 (-) True LOC120569352
XM_039818269.1 mRNA downstream 527064 4176670 ~ 4191892 (-) True LOC120570037
XM_039818268.1 mRNA downstream 542289 4168847 ~ 4176667 (-) True LOC120570036
XM_039817825.1 mRNA upstream 10433 4773593 ~ 4797994 (-) False LOC120569766
XM_039817827.1 mRNA upstream 10433 4773593 ~ 4797994 (-) False LOC120569766
XM_039817826.1 mRNA upstream 10433 4773593 ~ 4797994 (-) False LOC120569766
XM_039817824.1 mRNA upstream 10433 4773593 ~ 4797994 (-) True LOC120569766
XM_039818575.1 mRNA upstream 55434 4818594 ~ 4821932 (-) True asnsd1
TU164068 other downstream 558817 4154234 ~ 4160139 (-) False col6a3
TU164061 other downstream 565349 4146525 ~ 4153607 (-) False col6a3
TU164071 other downstream 575131 4139975 ~ 4143825 (-) False col6a3
TU163927 other downstream 1279376 3433175 ~ 3439580 (-) False G121877
TU163940 other downstream 1289217 3426039 ~ 3429739 (-) False steap3
TU164353 other upstream 154499 4917659 ~ 4924228 (-) False glsb
TU164629 other upstream 1248880 6012040 ~ 6014195 (-) True G122404
TU164770 other upstream 1877721 6640881 ~ 6650306 (-) False LOC120569614
TU164750 other upstream 1907080 6670240 ~ 6681971 (-) False LOC120569614
XR_005640915.1 other upstream 1907283 6670443 ~ 6681994 (-) False LOC120569614

Expression Profile