RNA id: XM_039818480.1


Basic Information

Item Value
RNA id XM_039818480.1
length 843
RNA type mRNA
GC content 0.43
exon number 7
gene id mettl5
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17074358 ~ 17078125 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATGTTTTGGATGATGCACGCATTGTTAAGGAAGTTGTCTTCAACCATGCTCAAAATAAAACTCCTGTCTATTTTAGTTGAAGAATAACGGTTTTAAACAACACATCGGGGTTGTCGCACAGCGTGCACACAGGTTTGGGTCATCATAGTCGCTAGTAATGAAACTAAAAGAGTTAGAGAGTTGGCTACAGCAAGTGGACGCGTTTGAAGAGCCAAAAATTCTTCTTGAGCAATATCCAACCAGTCCTCATATTGCTGcatgCATGCTTTATACAATCCAAAACACGTTTAATGACATTGAGGGTAAACTAGTGGCAGATCTGGGATGTGGCTGTGGAGTCTTGAGCATCGGGGCTGCGATGCTTGCTGCAGGtttgTGCGTCGGCTTCGACATTGACAACGATGCACTGGACATATTCAGAAGAAATGCAGAGGAATTTGAAATTTCTAACGTGGATCTGGTCCAGTGTGACCTGTGTTCTCTGGAGGCAGAGGCTTATGCCAAAAAGTTTGACACCGTAATAATGAATCCACCATTTGGGACAAAACACAACCAAGgcATGGACATGAAGTTCTTGTGGGCTGCTATAACAATGGCAAAGACAGCAGTGTATTCACTCCATAAAACATCAACACGAGAGCACATACAAAAGAAGGCTAATGACTGGGGAGTGAAAATGGAAGTAATAGCAGAACTAAGATATGACTTGCCAGCATCTTACAAGTTCCACAAAAAGAAGTCGATCTTGAGCGGACGTTGTTTCTCAATCAAAACACAGCATTTGTCCACTGCAGATACATTTTAAACCAAGAAGCAGTACAACCTACCTGGATAACACAAGC

Function

GO:

id name namespace
GO:0032259 methylation biological_process
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167546 lncRNA downstream 8837 17062706 ~ 17065537 (-) True G124590
TU167544 lncRNA downstream 14084 17057779 ~ 17060290 (-) True G124588
TU167539 lncRNA downstream 32002 17040193 ~ 17042372 (-) False fastkd1
TU167536 lncRNA downstream 33356 17040193 ~ 17041018 (-) False fastkd1
TU167568 lncRNA upstream 16318 17094443 ~ 17099028 (-) True G124601
TU167573 lncRNA upstream 46756 17124881 ~ 17127544 (-) True G124606
TU167579 lncRNA upstream 98031 17176156 ~ 17180098 (-) True G124612
TU167672 lncRNA upstream 149774 17227899 ~ 17230116 (-) True G124679
TU167666 lncRNA upstream 170244 17248369 ~ 17338260 (-) True G124673
XM_039817654.1 mRNA downstream 16063 17049924 ~ 17058311 (-) False ccdc173
XM_039817656.1 mRNA downstream 19929 17049924 ~ 17054445 (-) False ccdc173
XM_039817653.1 mRNA downstream 19953 17049924 ~ 17054421 (-) True ccdc173
XM_039817655.1 mRNA downstream 20106 17049924 ~ 17054268 (-) False ccdc173
XM_039817651.1 mRNA downstream 33435 17035373 ~ 17040939 (-) True fastkd1
XM_039818005.1 mRNA upstream 172257 17250382 ~ 17271042 (-) True tlk1a
XM_039818212.1 mRNA upstream 193615 17271740 ~ 17277883 (-) True mettl8
XM_039817855.1 mRNA upstream 226646 17304771 ~ 17324588 (-) True slc25a12
XM_039818549.1 mRNA upstream 306638 17384763 ~ 17386999 (-) True dlx2a
XM_039819086.1 mRNA upstream 343742 17421867 ~ 17424329 (-) True nup62l
TU167228 other downstream 693609 16378609 ~ 16380765 (-) False gcgb
TU167157 other downstream 972781 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 1657102 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 2080585 14984485 ~ 14993789 (-) True G123960
TU166600 other downstream 2284468 14784561 ~ 14789906 (-) False G123886
TU168094 other upstream 1034985 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 1035385 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other upstream 1035447 18113572 ~ 18115089 (-) False LOC120569287
XR_005640956.1 other upstream 1078607 18156732 ~ 18163749 (-) False prkra
TU168240 other upstream 1617355 18695480 ~ 18699802 (-) True G125089

Expression Profile