RNA id: XM_039818515.1


Basic Information

Item Value
RNA id XM_039818515.1
length 4744
RNA type mRNA
GC content 0.43
exon number 7
gene id tmem198a
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 14673543 ~ 14710762 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AATCCCATTAATACACACCAGTACTGTCCTTCCCTTTGGCatactcacatgcacacacacaacacacaaacatgcacactggTTTAAAGTACTGGTAAGATACATTGCTGTTTATTGTGCAGCTCACCAATATGCTGTCTGTGCATCCATTTAATGATTTGAGCAGTATTTACACTGTGCGCTGGTCAGGACGCGGGCAGTCTTATGAGAACAGTGTCAAGTTGGGAGGAACTAGTTTCAACCAGATCTAACTCACAGCGTGTAGACACGTCTCAATGGGTGAGGCCCACTGATCCAGTCATCCCCTGCACATCccctccacccctcccccctGCCCTCCTTTGTTCCCCTAAACTCCAACCCACTTCACTTCAGTCACCATGACTTCCACCGGCCACCTGCTGGGTTTGGCTGAGGTGGGGCTGAGGTGTGACCAGGAGATTGAGAGGAGATATGAGATTGTTCCCTCAGTGGTCTGCTCCATGTGCTGCCTCTTTGGAATCATCTACTGCTTCTTTGGCTATCGATGCTTCAAGGCCGTATTGTTCCTCACAGGCCTAATGTTTGGCTCTGTGGTCATCTTCATGCTGTGCTACAAGGAGAGGGTGATGGACACTCAGCTCAGCGTCGAGGCGTCAGTGGGCATTGGCCTGGGTATCGGGACCCTGTGTGGCCTTGTGACCATGTTGGTTCGAAGTGTGGGGCTGTTTATGGTGGGCCTGCTGCTGGGCCTACTGGTTGGAGTGGCTTCACTGGTGGTTATGGAGGAGTTCTACCACCCCAGAACAGTGTGGGTTCCTCTGGGTATTCTCCTGGGTTCTGGGACGCTATTTGCCGTCCTCACTCTTCAGTGGCAGCGCTGCTTCGTCACCCTCTCCACCGCCACATTCGGCTCTGCCATCATCACTGTCACCGTGGATTACTTCATAGAGCTGTTCGCCTTGGTCCACTACGTCTACGAGAGACTCAGGGTGGCACCAAAGAAGCCAGTCTGCTGGTTTACTTGGGTCATCTTGGGGGTGTGGCCTGTCCTGGCCCTCCTCGGAGTGCTGATCCAATGGAAAGTCACTGCAGAGGGATTTTCTCACACAGAGGTGGTTTTGAGTCGACAGCAACGGAGGGTCCAGCTCATGCGGATCCGACAGCGGGAAGAGAGgctgaaaaaggaaaaggagaacaagaagaagaaaaaacgagAGAACCAGAAAACCAGCCACAAGCAGAAACCCCACACCaatcaccaccaccagcagtaCCATCACCCAGCGGCCTCCCACCCTCATCACCAAGCCCAGAGCTCTCAGCCACCTAAAGTCCCTCCTCCTCAGACTGAACCCGGCTACCACCGCAAGGCCAACCCTAAAAGGCGCTTTGATGGAGATGTGCTGTCACCGAGCTACATCAGGAGTTTCAgggacagacaaacagacagacgaGCGTACTCCCACAGTCGAATGATGAGCCGCTCCCGGATGGCCGAACTCGACTACGACTGCGGCTCTCGAGTGCCCCTCACGGCTCCCAGTGGACCCCCAGTACGCATCTGAGACGGAGAAatgcacatccacacacacaacctcacacacacacaatcgcaCAAGGCTACTTCAAACCTCTTTGTCACAGTTAGGGGTAGAAAACCTAACCCTGCTGTGCCAACCTAATCAACTGCCTACAGGAACTCAATATGTCCCACACTGGTTTTCTCCTCTCAGACCTGTAAGAAGTTGTATTTATTTGGCCAGTTCGgtcatgttgtgttttttttatgaatgtcaAGACACAAGAGCTGAGCCTCTTCTTTTGGATGGAGTAAGAACTGATTGCTTGGTCAAATCTCGAACATGAGTCATTACATACCGTATTTCTTCAACTTTAAACTTGTTACGTTACCATACTGGTCCGGGGGACACTGGAAAAAATAGACCTGTCTGGTAGGGAGTTGATTGAAATATTTGATTTAAAGAATCTTCTGATTGCTTCAAGCCATAAGAAGTTTTCTCTCAGACTGCAGTGGAGGAAGGAATCAAAACACTAATTTCACCGCATGAGGgatgcattatttttttttaaatgcattacGTGGCTTTCATGGAGTCAAGGTAGCACTACCTTCAAAAAACCTTCCACAATATCTTTAGTTCAAgggttgttattattattatttttagataattttttggcattttaggcctttatttgataggaaagcttagacatgaaaggggagagagagggggaacgacatgcagcaaagggctgcgggTCAGAATcgaacctgcagccgctgccgcgaggactgagcctctgcacatggggtgcacgctctaccaggtgaactACCCCGGTGCCCCCCAGTTCAAGGGTTATTAACGAGGAAATTATTTGCTTCAAGGATTCCATTAAGAGCGCTCAGAGGAAAAtgacagaacaacaacaaataacacAGCTAACACTGACACAGAAAGACAGctcttcttcatcatcttcttcactGAAAGGTCATGTGTGAAGTACATGATGTCAGCCTGATATCTTCACTGATACCCTGTCAATCCAGAGATGGCAGCGCAAGTCAAAAAGCTGAAAAAGTGGCTGCTTTTAGGTGTGCATCAGCTCAGAGTTCACACTGAAGacaatttttatgttatttcacCCACGAATCCTCCATGTGTCATTGCCTACACTGGTGCCATTTTCCAAGGGGAATCTCATAACTCTCCTTTTGCCCTCCATCGCCAGCTGTTTTACCACACGGACCTGAGCAGGAGACACATCCGTACCTCCCATCTAATTTCCCATTTCCActgaatttaaaatatttttttaagctgcTGTATGTCATTATCTTTGTTGTCATGTTTTTAAGTGCTCTGATGTCCCTTTTGCTCTTCTAAccctaaaaaaaatcttaaatttgtCAGCTATTTGTCTAAATATGCTGTTAAGGCACAAAGACAATACATTGCTATCTGGTCATTCATGGCAGAGTTAAatatagtgtgtttgtgtgtgtgagtggacaCAGGAGCCCTGTGGCAAGTGATGGACTGCACCAAATTTTGGCCAAGGAGAGGGGGTTTCAttgtaatgtatgtaaaatatgctgtattgtttttcctctttttgcCAATTTACTGGTCCAATTAAAGATGTGAATCTTATAGTTTGGATGCAGTGTTCAATgatgagaaggaggaggaggaagataaTCTCCTGTAAATGATAAGACAGTGAAAAGATGAAATCATTTGCAAATAGCGCCCTCTAATGTTTACTActggcctttttttttcctagaCTTACTGTTTATGTGtgcatatgtttgtgtgttacatGCATCTGCATATGAGTTGCTTTTAAAATCAGATGTGCTCCGAACATTGATATTGTTGTACTGAACATCCAGAGAGGTGAAGGGAGTTAGATTTGTACAGGATGGAACAATGGaactatttttgttttatttgaaccTCTTTGAAATTGACGTACTGTAGTTCCCCACAATACACACCAACACTACCAATGTTACAATTCCCACTGAGACTAAATGTTACTACAAAAAGACTTGGATTGTGTTTTATGTACATTTTTGGAGATTTTACTTTTGAGGTTTagataaacaaaaacattccACGGTACTGTACTTAAGATGGGATGTGACAGGCTTAGCACTAGAGGACCGATCATTACCACCTTAACCCATACTGCATGAGAATCCTTGTGTAACTGTTTCCAATGTGTCAGTATTTTAGTGTGTCCCTGTTGTCATGTGAAAACCTCAGATTTCCAGTTATAGTTTGTTGGTCCCAGGGTGCACAAAACACAATCCACATTGGCTGGATGAAGGACaaactcttctcttctcttctcttctcttctcttctcttctcttctctctatgATGTCCAGGTAAAGGGCTTTGAAAAGACATTAAAACAATTTCCCTCCTATTGACATGCATTATGCTAACTCACTTTCTAATCTACTGTATCATTGTTATCATTGTAACAATAATGTTTTGCAGTAGTGGCTGTTCAAGTGTTTTTTGGCTTTTGCTTTCACTTTAGTCCTGTTTGGGTCTTCTTTTGGGGTTTTACTGTCGAGCGTTTTTAACATCactgtctttacattttagaaaaataaaaatttacaaAATGGTAATTTGAAACATAATAGGCCCCGTTCTTGTCTTTGGGGACAACATGAATTATTGTAATTAAATTGTCAGTTATTTTTAttagctttttttaatttttgttttcattattttttgtgATTGCCTGTCACTGCTGAATATACGTGAGGAAACACTTGTTGTAGATATTGAACTGtaaatgattttaaaatgtacagacgttttctttcattttcatgtTTACACCATGATCACTTATGTCATTTATCCAGCTGATTGTATCAGACATGTTTTATATTGCGTTACTACTGTATGTCCAATTGGTTTGATTTGGCTGGGTGCTGGAAGCACTTGTGTCATTCTCATCCTGCTGTTTCATCGTGTAATGTTGAAAATCAGCAAACAAACTGAGCCTTGACTCTGATTATCAGCTACCTTCAGTAATTCAATAGTTGCTCCACATTTTGAGAAGAGACGACAATTCATTTTCTTTCCACGCTGTTTAAATGTGTACAAATCAcctaataattattattattattattattgatagcATGAATTTATATGGACCTAAAATATGATAAACATTGTTATTCTACAATCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166578 lncRNA downstream 162 14673131 ~ 14673381 (-) True G123872
TU166555 lncRNA downstream 9045 14598791 ~ 14664498 (-) True G123861
TU166569 lncRNA downstream 25251 14630605 ~ 14648292 (-) False G123868
TU166567 lncRNA downstream 39344 14629743 ~ 14634199 (-) True G123868
TU166413 lncRNA downstream 349483 14323811 ~ 14324060 (-) True G123755
TU166584 lncRNA upstream 19814 14726756 ~ 14730380 (-) True G123878
TU166587 lncRNA upstream 19814 14726756 ~ 14730380 (-) False G123878
TU166611 lncRNA upstream 96572 14803514 ~ 14804332 (-) True G123889
TU166677 lncRNA upstream 232389 14939331 ~ 14939574 (-) True G123948
TU166696 lncRNA upstream 277072 14984014 ~ 14984415 (-) True G123959
XM_039817682.1 mRNA downstream 17076 14634878 ~ 14656467 (-) True ptprna
XM_039818298.1 mRNA downstream 64256 14602104 ~ 14609287 (-) True LOC120570072
XM_039818875.1 mRNA downstream 75011 14590605 ~ 14598532 (-) True pofut2
XM_039817649.1 mRNA downstream 86318 14519600 ~ 14587225 (-) True abca12
XM_039817645.1 mRNA downstream 157323 14489589 ~ 14516220 (-) True bard1
XM_039818969.1 mRNA upstream 23999 14730941 ~ 14738414 (-) True LOC120570577
XM_039818784.1 mRNA upstream 134357 14841299 ~ 14858737 (-) True LOC120570436
XM_039818785.1 mRNA upstream 134357 14841299 ~ 14854316 (-) False LOC120570436
XM_039818796.1 mRNA upstream 196414 14903356 ~ 14918290 (-) True LOC120570445
XM_039818795.1 mRNA upstream 198162 14905104 ~ 14920649 (-) False LOC120570445
TU166096 other downstream 2053728 12619353 ~ 12619815 (-) True G123481
TU165255 other downstream 5673420 8999462 ~ 9000123 (-) True G122878
XR_005640909.1 other downstream 5870453 8798035 ~ 8803090 (-) False ccnt2a
TU164950 other downstream 7355950 7181945 ~ 7317593 (-) False tmeff2a
unassigned_transcript_606 other downstream 7494385 7179077 ~ 7179158 (-) True trnas-aga_9
TU166598 other upstream 77619 14784561 ~ 14794497 (-) True G123886
TU166600 other upstream 77619 14784561 ~ 14789906 (-) False G123886
TU166697 other upstream 277543 14984485 ~ 14993789 (-) True G123960
unassigned_transcript_607 other upstream 710258 15417200 ~ 15417272 (-) True trnak-uuu_17
TU167157 other upstream 1392336 16099278 ~ 16101593 (-) True G124303

Expression Profile