RNA id: XM_039818527.1


Basic Information

Item Value
RNA id XM_039818527.1
length 3276
RNA type mRNA
GC content 0.42
exon number 11
gene id atf2
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17712254 ~ 17729339 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAACAAGAAGAAGTGCCTGTATCTGTCCGTGTGTGACGTTCACGGAAGAGCTCAAGCTGCTCTCGCGAGACTTTAGTACAGCAGTGGGATTTTGGAAATTAAGGGTTGTGGCTGAGGGGGTGAAATAACAGGAATTCCTTAATATGAGTGATGATAAACCTTTCCAATGTACTGCTCCTGGGTGTGGACAGAGATTTACAAATGAGGATCACTTGGCTgtccacaaacacaaacatgagaTGACACTGAAGTTTGGCCCAGCGAGGAATGACAGTGTCATCATTGCTGACCAAACACCTACACCTACCCGCTTTTTGAAGAACTGCGAGGAGGTTGGACTGTTCAATGAACTTGCAAGTCCATTCGACCATGActtcaaaaaagtgacagaagaTGACATTAAAAAGTTACCGTTGGATTTGTCACCTCTGGCAACACCTATCATACGCAACAAAACTGAGGAACCCACAGCTATGGAGGCACATCGAAATAGCCCTCTGCCTCACCCTGAATCTACTACGAATGATGACAAGGAATTATCTTTGCAGCCTGCCTCACTGCCAACATCCACTATAGTCCATCCTGCATCCCTCCAAGTTCCCAATGTACTTCTAGCAACCTCAGAGGCTAATATTGTAATACAGCAAGCTCTTCCATCACCAACATCTAGCTCTGTTATTACCCAAGTCCCATCCACTAATAGGCCTATAGTCCCGGTATCTGGCACCTTCCCTGTGCTCTTACAGCTGCCTAACGGCCAGACCATGCCAGTTGCTATACCTGCGTCTATTACAAGCTCAAGTGTACATATTCCAACTGCAATCCCTAATCTGAAAGCCACATTAAGTCAGCAGCTTCCTCAGGTAACCAATGGAAATGGTGGTGAAGTGCAGAGCAGCGCCGTAACCCACACTACTGCTCCCACTTCTCCTGCTCCGACCCCAACACCAACTCCAGCCCCGATCGCAGCCCTAACTCCTGCTCCGGCTCCTCACCTGCCCACAACTGAGGAACCTTCTCCCCATTCCCTTCAGCAGCCAGCCACCTCCACCACAGAGACACCTGCTTCCCCGGCACCTCCTGCGCAAAACCCCCCAAGCACAGGGGGTCGACGGCGCAGAACCACAAGTGAAAACCCCGATGAGAAGCGGCGCAAGTTCCTGGAGCGTAAcagggctgcagcctctcgCTGTAGGCAGAAGAGGAAAGTTTGGGTCCAGTCTCTGGAGAAGAAGGCTGAGGACCTCAACTCCATGAACGGACAACTACAGAATGAAGTCACCCTGCTGAGAAACGAAGTGGCTCAGCTGAAGCAGCTTCTTCTGGCTCATAAAGATTGCCCTGTAACCGCCATGCAGAAGAAATCTGGCTATCACATCTCTGACAAAGACGAGAGCTGCGAGGAGATGTCCGTCCCCGGCAGCCCCCAAAACGAGGCCATCCAGCACAGCTCAGTGAGCACCTCCAACGGGGTCAGCTCCTCGTCCACGGCCCCGGCTGCCTCGGCCCCGTCCAGCGCCTCCACCACCTCATCAAACCAGAGCACAGACGAGACCCAGTCTCAGCCTTCAGGGAGTTGATCGTCCCAAACTGTGCCCAGGCGTCTACACTGGAGCGCCGTTGCCTCTTCAATCTCTACAAACGGAGGAAAGCGATTTTCTCCAggcttcagttttgtttttaatttattattttatgtttgaTCAATTTTGTCCTCCGTTGGcaatgctttttaaaaatgcaaatgttttcTCTGGAATTGATGAAGACAAAAGAACAGGCACTTTAGGTGAAAGATGTAAAACATGTGGTTCTAAAAGGTTTTTGTGttaattatttattactttttttttaagcgatCAGCTGGAAGGTTTGATCAGTGAATTGTTGACCTTACTAAAGTGTGATGCGGTTCATTTGTAGTTTGCTTGATTGTTTTCATGACTTATATAAGCACTATCTTTATGATAGAGTGACATAAAGAGCagtcacttttttcataatttgcTTTTTTCCATTTTGCACATTTTGAGAAATGACAGGTTTACCTTTTTAGAGTTTTGACAGTCCAAATGTTAAGTACTGGCAGCTTTTTAGAAGTAGATTTGAATACTGTCACATTACACAAATGTTAAATGGCTGAATcagattttaaatttgacaactTTTCTGTGAGAGAAATCAACTGTAGTCGCATTGTTCAGTTTGAATGTTTGAGCTCTACCTTGGCTTGTACAAATAGTCTTAAAGAGGTGAGCTGGTTAGAAATGTGTGTTATTTCATTAACATTCCACCTGTAGTCTGATTGTTCCTGAAGCAGTGATTGTAGGATTGCAGTACCTTTTCCATTACTCAATCTGGTGACTTCATTCAGTGCCATTAATGTTTTTGTATGAATTACTTCTGTACATTTTTAATGCAGATTAGCTTTAGTTGATAGCTGTTCTCTCAGAATAAGGGTCTCATGAACATTGTTTCTCAGTAAGGAAATATCTTGCTTTGTATACTGTCTTTGCTTTACAAGTGACTGTTTCTGGCTTTAATGCAGAACACTTAAGGGCAATGttgttttaatgatttttaGAAAACATTGTAAATAACAACAATGATACATTATATGTGATCTTTCTAGGTGTTCTGTACTTTGTTTTTTATAGAATAGTCTGGTTTCAGTAGCTGAACTCTATTGATCACATAAACTCTGTTAGCAGTTAAACTTAACAATGTTTCAATCATTAGTATAGGCCTCTTCCTGACTCCATTCATTTTCATGTAAGATTAAAGCATTCAGATGTGAACTGGAATCACGTCATGTATATTAGAGTAACACTACTACCGCCTGTAAGAATTGTAAGCATTTCATCATTGAATAATAGGAAGCAAATCACACCATGAAGTCAATTTGCCTTTTCTCTTAGTCTGTACTAGCTTACTACTGTGTAGTTTTACGAGAACCTAACACATTGATTTCTTAAagtatgatttatttatttattttactgttatgtGCTGTCTGCATGAGGTAATAATTCTCTGCGAGAATTTAACTGTTTATTCTATAATGTCTCGGTCAGataaatatcattaaacaaGTTGGTTCAACTTGAGTTGAGGCTCTAAGCTTATGAAAGCTTTGGTTATTTGTTGTACCTTGGCTTAACTGCTAAAAAAGGAGTGTGATACTGTGTTGAAAGTGTACTTGTAACTTGTGAAAGTTCTgtataaaaatttaaattgatAAGTTGTTGTAATAAACCTTTTAATATGTCTTTAAAA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167694 lncRNA downstream 361508 17347911 ~ 17350746 (-) True G124691
TU167666 lncRNA downstream 373994 17248369 ~ 17338260 (-) True G124673
TU167700 lncRNA downstream 417614 17291927 ~ 17294640 (-) True G124695
TU167696 lncRNA downstream 421816 17287949 ~ 17290438 (-) True G124693
TU167672 lncRNA downstream 482138 17227899 ~ 17230116 (-) True G124679
XR_005640878.1 lncRNA upstream 7945 17737284 ~ 17822487 (-) False LOC120569506
XR_005640876.1 lncRNA upstream 7945 17737284 ~ 17822487 (-) False LOC120569506
XR_005640877.1 lncRNA upstream 7945 17737284 ~ 17822487 (-) True LOC120569506
TU167930 lncRNA upstream 293070 18022409 ~ 18023477 (-) True G124872
TU168090 lncRNA upstream 362988 18092327 ~ 18092530 (-) True G125000
XM_039818601.1 mRNA downstream 29410 17672214 ~ 17682844 (-) False chn1
XM_039818600.1 mRNA downstream 29411 17672214 ~ 17682843 (-) True chn1
XM_039817422.1 mRNA downstream 43850 17660170 ~ 17668404 (-) True LOC120569555
XM_039817414.1 mRNA downstream 53850 17648143 ~ 17658404 (-) True gpr155a
XM_039817421.1 mRNA downstream 69608 17636799 ~ 17642646 (-) True cir1
XM_039818977.1 mRNA upstream 726 17730065 ~ 17732592 (-) False atp5mc3a
XM_039818978.1 mRNA upstream 726 17730065 ~ 17732538 (-) True atp5mc3a
XM_039817996.1 mRNA upstream 97739 17827078 ~ 17836086 (-) True lnpa
XM_039817997.1 mRNA upstream 123530 17852869 ~ 17857052 (-) True evx2
XM_039817797.1 mRNA upstream 288740 18018079 ~ 18025208 (-) True nfe2l2a
TU167228 other downstream 1331489 16378609 ~ 16380765 (-) False gcgb
TU167157 other downstream 1610661 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 2294982 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 2718465 14984485 ~ 14993789 (-) True G123960
TU166600 other downstream 2922348 14784561 ~ 14789906 (-) False G123886
TU168094 other upstream 383771 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 384171 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other upstream 384233 18113572 ~ 18115089 (-) False LOC120569287
XR_005640956.1 other upstream 427393 18156732 ~ 18163749 (-) False prkra
TU168240 other upstream 966141 18695480 ~ 18699802 (-) True G125089

Expression Profile