RNA id: XM_039818570.1


Basic Information

Item Value
RNA id XM_039818570.1
length 5284
RNA type mRNA
GC content 0.46
exon number 18
gene id sytl5
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20738792 ~ 20774655 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CTGTCGGGAACACCCTGGCTGTGGATTTCTGCCTTCAGACGGTGCACCTACACACTCGCTTACGGTCCCTGATCCCCGTACCGTCTCTCCCAGCCAGCTGTGCTCCCCTGTCGGCTCCTCGCCGCTGTCCGCAGCCGCCAGGGTTCCTGAGAGTGGTCACCTCTTGTTAGCTTCCACAAGAAGCAGAAGATCGGAGGAAGAAACACTGGAGGGACAAAGTTCAGACTATGCCCGCTCTAAAAGAACAACCCAATCGTGGGCAGAACATAACAGAGAGAGGAGCACTTTGCAGCAAAATGTAGTTATTTCTGCCTTTTTCCATGCAATACATCTGCTTGGCTGATTTAATTGGCCGAGTGTAGACTGAGGGACCAATGGAGCAGGTCGGGGAGGATTTGAACCTCTCCTTTCTGCTGGAACATGAACGAGACATTATCCTGAAAGTGCTGCAGAAAGATGAGAAATTGAGGAAACGAGAGGAGAAAAGGATACGGAAGCTGAAGAATGAGCTGCTGGAGATCAAACGAAAAGGTTCCCGTCGAGCCCAGGTGCTGGGGGAGAGACAGTGTGCTCGCTGCCTGAAGAGTTTGGGCCTCATCTTTGACCGCGGAGATCTCTGCAAGGAGTGTCAGCTACGCATCTGTAGCGACTGCCGTGTAACAAATCCCAAAGCACGACAGTGGAGGTGTAACGTTTGTGCCAAGATCTCGGAGCTGAAGGTGGTAACAGGAGAGTGGTTCCTAGAGGAGCGGTCCAAGCGCTTTGAGCAGGGAGTGCCAAGTGGTGACGTGATCAAACAGACAATCATGAGTAGTCCAATCATCccagaaaaaaagtcaacagAAAACCAGTCAGCCACTTCTGAGTCAGAGAGATCCGACACACCGAAATCCAACAGAAGTGCAATACTCAACATTGTGGATGGTGCCAGGAAGAAAGGaaggaTGAAGATGGATAAAAAAGGCAGCCGAACGACCTTAAAGCTGGAGAACGGAGTCGACAGCGTCAATGTCAAATCTGCTTCTGATGGAGAGACTCCTAGCGTACGGAGTGTTCGCTCTGCTCAGAGTCCACGTTCAAATAGGGGTGGTGCGGTGGCCTTGGAGTCCTCGGGGATGCCTACGGTACCCAACAACCTGCGTTCCCAAACTCCGGACGGATCCTCCATTACGAGCGAAAACCGGAGGCCTGACGGAGCGGAGAGCGTTGCCAGTGTACACTCCAGTGACAGTGCGCCTGAGAAAAAAGCTACGGGCCATCACAGGACGAATTCGGACGCCCCGACCATTTCTGTGTCCAGGGCCTCGGTTTCATCAGATCACAGTCGCTCAGAGATGGACCTGTCAGCTCCTGGTTCTGAACCAAGTGACGACGCCCTCAGTCTCAGGAGCCGTTCAGTCCCCAGGCTTAACAAAGCAGAGTTTTCTGATGAGGATGCGGAGGAAGACATCGATGCACTGATGTCGGCTCACAGCAAGACTGCCAACCGACGCTTAAGCAACGCGCTGTCAACGTCTTCCACCCCTGGCTCAGAGAGAAGGTGGGGGTACCTCAATGTCCCCGACTCAGATGCTGAGACTAGTAGTATAAACAGCATGATGAGCATGTACAGTGAGACTGGTGACTATGGCAACGCCCGGGTGAGCGGCGAGATCCTGCTGAACATCAGCTACAGCTACAAAACCGGGGCTCTCAACGTCCTGGTGAAAGAGTGTCACAACCTGGCAACAGGAGATGAGAAGAGGCAACGCACAGACACTTATGTAAAGACTTACCTGCTGCCAGATATGTCAAGACAGAGCAAGAGGAAGACGAGCATCAAGCCCAACACCATTAACCCTGTTTTCAATGAGAACCTGAGGTACGTGATCAGCCACACGCAGCTGGAGACTCGAACTCTGCAGGTCTCCGTGTGGCACCATGACCGGTTTGGACACAACAGCTTCCTGGGAGAGGTGGAGCTGACCTTTGACTCCTGGGAGTTTGATTCCCAGATAGAGGAGTGGTACGCACTGCAGCCCAAGGTGGAGAGCAATATAGACTCCACAATGCAGTATAAAGGAGAACTGACTGTCGTGTTGAAGTACATACCTGCAGAGAAGAATCTTATGCTGCCGCTGGACCAAGTACAAGTGAAGAAAGGGTTCCTGAAAAGCAAGAAGAAGAGCAGCTTCACTCTGCCTAAAGGTGGCATGGTTGAGCTCCTGGTCAAAGGAGCCAAAAATCTAACTGCTGTCAAGTCTGGAGGCACTTCAGATCCTTTTGTGAAAGGATACCTCCTCCCTGACAGCAACAAGTCAACCAAGCACAAGACGGTGGTGGAGCGACGCACTGTGAACCCGCAGTGGAACCACACCTTTACCTACTGCGGGCTGCAGCCAGGAGACCTCAACAACGTCTGCCTGGAGCTCACCGTGTGGGACAAAGAAGCCCTGGCCAGCAATGTCTTCCTGGGAGGGGTCAGGCTTGGAGCTGGCACAGGCACAAGCTATGGGAACGAGGTAGACTGGATGGACTCATACGGGGAGGAACAGCGGCTCTGGCAACGCATGATTGAAAACCCAGAAGTCCCTCATGAGTGTACTCTGATGCTGCGATCCAGCATGCGCAAGTGCAACACATGAGCCAAATCAAAGCACAGACAAGAGaggataaaaaataataaaagagggaggaagaggtaATGTGATGGCGGGAGGAGAGAGCTGGAGAAGTGGAATGGTCAAGAAAAACAGAGGGTCCAGGACTCAAACGCTCATAAAGGAACCGATACTGTCCCTCTCCCTATTACTTCTTTTTTCCTCCTGGGATGCCCTGTTCAGCCAGTCATGCCTTACACACTCATCCACATGTTGTTCCCCCCCGCCCCCGCCCCCTTCCAAAGCATCTAGTCTTGACCAAGcactgctgtttgctgctgtaTATGAAAAAAAACGTGTTGTATGTAACTTCTCTAGCCAAATAAGCACACGGTGTGACTCCTGATGTGTCCGACCTCGTCTCTGTGATTCATGAACCAGAGTAACATCTGCATGTAGTTACAGCTGACGGAGACCATTTGTTAGGTGTTAGACAAGGCACTGATCAATAATGTAGAGACTCAGACATTCCCTTTATAAGCAATTGAGCTGCATCCTGGTCTGAAACCCATGCTAATGCTGAGATTCATCCCCTTATAAACAGTTGTGTACAGAGGTGGAAAGTGGCTTGTTCTTGTATACTGTCCTATTCAAGTAGAAGATGTTATTATTACTGAAAATAAATACTTGGTTAAAATTACAATAGTAGCACTATTGACAACTCAATCTCTGTTAATCTCCGCTGCTCTCTAAAGTAGTGACAGTCTATAttatacatataaatacatatttataaGCTTTTGTTTTGATTGCTTTATAAGGGAaaatattatcagcaaaattgAGTATCCTCCAACAGGCTGCTCTGTTATTATACTTGAGGTGAAAGTATTAATACTGATTTTAGAACATACTCTACGCTAACTTTGTTAACTTTTTCAGTCACTTAATAAGTCATTaataaaatgccagaaaacTTAAGGCTTAAGGCAGTGTCTTTAAATTTcaaaagtttgtgttttctgaccaacaATCTAAAACCACTAACCACTAAAAGAAACTTAAattacaatgaaataaaacagcaaaagacaacaaattCTCAAATTTGACAAGCTGCAACTCAAATGTTGAGTATTTTTAGCCACACTAGCTTCATTGATGGTAGTGTCTGTCTGACGTTTgctcagtccaccactttggtccagactgaaatatctcaacaacaatGTTGTggattgtaataaaaaaataacaaacattcatggtccccagatgatgaatcctacggactttggtgatcccttcaTCTTTATCTAGCGCCACCAGTCAGTCAAATATTTCACTTatccagtgaaatatctcaacatctactaGATGGATTGGCACAAACTTTTGTACAGACATATATCATTCCCAGTCGATGAATCCTCTTGACTTTGGTGAacatgacttttcctctagtgccaccatgaggttgacatttgtggttttgagtgaaatatctcaacaactttgTGATGGATTGTCACGTTCCCCCGAGAGTGAAATAATGTTGGTGATTCCCAGATGTCTCTtcagcgccatcatcaggttaaGGTTTTTGTTCAGTAGTCTACTTTGGTTTTCAATCAAAAACctacaaaactaatgacattcccatcagcttcagctgtagtttgtgtttaatgctaaTTGCTAAatactagcatgctaacaggctaaactaagatggtgaacatggtaaacattatacctgcgaAACATCCACATTAGCATTGtgtttgtgagcatgttagcatgcagaTGTTAGCAATTAGCTTAAAGATCCAGGGTGCTAATGtaaagcctcacagagctgctagcatgatTGTAGACTCTTGTGGAGTCTTGTTGCTTGATGACATGAACTGATGTTAATTGAAAGCAAAAGTATTGGAAATGTATCTCAACACAAAAATGTACAAGGTCTTGAAGAATGTACTTGCAGTAACAAGAGTTTGTAGTTAGTaactttccacctctgattgtcaaaaacaaaaaaatctagaCAGATTACACAATTTAGATTAGCTTCGATGTAAATTAACATAACACTGTATCAGTGTGATAATAGATACTGCATGGTATGAGATAAAACAGAGGTAGAAGAACAAAAGATGGTTATGTAAAGCACTTATAATTATATCATTTTACACTCAAAAAAGAAAGTGTGATTCTAAGTTCAAGAGCCCTGAGACAGAGGCTGTGTGTATCTATAGAGTGAGTCAGCACTGAGGCCAGCTGCCTTCATCTCAGGGGGAGCCTAATAATGAGTAAGTGACAGTCACCTTGTCCCTGTTGCCCCGGGCTCTGCCATTCGCCCTCCTGTAATGAATcatgaaattcacaaaaatgtacaACCATTTCTCATGTGGAATGCCAATTTTGTTGTGCTTGCCCTTGGCAAACCCTCTGCTCTGAACTCCAGGAGCACAACAGATTCACACTGCACAATTATAGTAATAATACACGATGGTCACTTTACAACATACTTTAGATGAGAGGCTCGTGCTATATCGTGCTATATCCGATTACTGAAGATTACTGATGTACAGCATGTACTATCTCTGTTGTGTCTGGTTTCCAAGCATCAAACTCAGTGTATTCATTTTGTCTCAAATGTGTTACAGGAAtattttgaaataaacacatcttTCCATAGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169089 lncRNA upstream 25598 20712406 ~ 20713194 (+) True G125718
TU169071 lncRNA upstream 51745 20686697 ~ 20687047 (+) True G125702
TU169062 lncRNA upstream 59716 20674585 ~ 20679076 (+) False LOC120570651
TU169119 lncRNA downstream 20390 20795045 ~ 20825545 (+) True G125738
TU169132 lncRNA downstream 57839 20832494 ~ 20835754 (+) True G125749
XR_005641074.1 lncRNA downstream 129339 20903994 ~ 20911358 (+) True LOC120570516
TU169214 lncRNA downstream 136168 20910823 ~ 20911178 (+) False LOC120570516
TU169228 lncRNA downstream 179082 20953737 ~ 20958039 (+) True G125826
XM_039818275.1 mRNA upstream 4507 20724860 ~ 20734285 (+) True xk
XM_039817120.1 mRNA upstream 28092 20707241 ~ 20710700 (+) True asb11
XM_039818880.1 mRNA upstream 32788 20699231 ~ 20706004 (+) True piga
XM_039817758.1 mRNA upstream 89626 20641212 ~ 20649166 (+) False gabpa
XM_039817062.1 mRNA downstream 34663 20809318 ~ 20813381 (+) True otc
XM_039817059.1 mRNA downstream 38832 20813487 ~ 20823161 (+) True gpr161a
XM_039817060.1 mRNA downstream 39406 20814061 ~ 20823161 (+) False gpr161a
XM_039818721.1 mRNA downstream 78455 20853110 ~ 20858916 (+) False mpc2b
XM_039818901.1 mRNA downstream 91280 20865935 ~ 20871334 (+) True cep97
TU168970 other upstream 217518 20492178 ~ 20521274 (+) False G125627
XR_005640959.1 other upstream 473554 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other upstream 473644 20174828 ~ 20265148 (+) False myo16
TU168229 other upstream 2034264 18703028 ~ 18704528 (+) True G125079
XR_005640963.1 other upstream 2721379 18010757 ~ 18017413 (+) False hnrnpa3
TU169140 other downstream 78434 20853089 ~ 20858910 (+) True mpc2b
TU169142 other downstream 85497 20860152 ~ 20865442 (+) True G125757
XR_005641085.1 other downstream 844693 21619348 ~ 21627452 (+) False sox1a
XR_005641000.1 other downstream 880476 21655131 ~ 21688802 (+) False LOC120569986
TU169945 other downstream 2032538 22807193 ~ 22815102 (+) True G126363

Expression Profile