RNA id: XM_039818596.1


Basic Information

Item Value
RNA id XM_039818596.1
length 1549
RNA type mRNA
GC content 0.45
exon number 10
gene id naxd
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20478711 ~ 20485061 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTTGGCTGCTCAACTGTGGTTGCTGGCTGCTCTGTTGAGATTTCAACCTACTGGGATTCTGGGACAGTGACCTTTCCGAGGCGCCTTTAAATGCATCATAAACTGTTTCTTGCTGTACTGGTGCACTGTCAAGGCGCCTCATGATCAGGATCATTTGTGTACAGTTGTCAGCGTTGAAACGCAGTTCCAGTTTAGTGTTTGAACGCTACTACAGTTTGGGGTCTGCATCACACAGAGGCATGGATGATGACATCCTCTCACTAGTAAAAAGGATAGTCCCTCCACTGACATCCAAAAAGCACAAGGGACAGGATGGACGGATTGGGATCATCGGTGGATGCCAAGACTATACTGGAGCTCCGTACTTTGCCGCCATCTCAGCGTTGAAAGTGGGGGCTGACTTGTCTCATGTGTTCTGCACCAAAGATGCTGCGACTGTAATCAAATCATACAGCCCTGAGCTCATAGTTCATCCTGTTCTggaCAGTCCTAATGCAGTGGAAGAGATAGAAAAATGGCTCCCAAGACTTCACGGCCTTGTGGTGGGACCAGGTCTAGGGAGAGAAGACGTATTACTGAAAACAGCCAAGgAGGTGATAGAGAAGTCTAAAGCAAGAGATATCCCTATAGTCATTGATGCAGACGGCTTATGGCTAGTTACACAGCAACCATCTGTTATTCAAGGGTACCAGAAAGGCATCCTCACACCTAACTTCATGGAGTTCACTCGATTGTATGAGGCACTGCACCATGAACCCATGGACAGCAGTGATCATCAACGCAGCATCATGCAGCTCAGTGTAGCCATGGGCAACCTCACTGTGGTGCTAAAAGGAGAACAGGATCTCATTACAGACGGCACTAAGGTGATCTCATGCAGTATTGAGGGCAGTGGGAGAAGGTGTGGTGGACAGGGTGATCTTTTATCTGGATCTATGGGAGTTTTGGCACACTGGGCCCATGCTGCCTCTGCAGCTGGAATTGGCAGAAGTTTGAATCCATCAGTTGTTGCTGCATTTGGTGCCTGTTCTCTTACAAGACAGTGCAACAGTCAAGCATACCGGCGATATGGCAGGTCCACCACCACATCGGACATGATCCAGGAGATTGGCACAGCCTTCAAAAAGCTATTTGAAAGCTGAAAACGGCCAAGGAAAATCATTGTTATAAAATCGATACATACATACTCAATTTTGCATAGTTTAAAACTGCTCATATAGCCTTTGGCTGGGCCAGTCTAAAATGTTCTCATCAAGTTGAAATTGAATGAACGTTAGAGAGGTGTGGACTATCCTTTCAAAGACAGCTCTCAAAATCTGGTGCAAAAGAAATATAAACACTGACTTGTTGTTTGAAGAGTATAAAATGAACCCtaggagaaaacaaacaaacgtgtCTTCCATCTCTCGTATTATTATGAATGCATTTACAAAACATGCTGAGGTAGCTATATTTTTCACAACCCACCAAAGAAACTGAGATGGAAAGATTAATGTGGCCACTGTAAAACAGAAACTTGATTggattttgaaataaataataaataaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168897 lncRNA upstream 148054 20330387 ~ 20330659 (+) True G125577
TU168867 lncRNA upstream 209585 20228728 ~ 20269128 (+) True G125547
TU168817 lncRNA upstream 450732 20024263 ~ 20027981 (+) False G125504
TU168818 lncRNA upstream 450732 20024263 ~ 20027981 (+) True G125504
TU168814 lncRNA upstream 462459 20016021 ~ 20016254 (+) True G125501
TU168965 lncRNA downstream 6600 20491661 ~ 20492121 (+) False G125626
TU168968 lncRNA downstream 6600 20491661 ~ 20492159 (+) True G125626
TU168966 lncRNA downstream 6627 20491688 ~ 20492121 (+) False G125626
TU168967 lncRNA downstream 6627 20491688 ~ 20492159 (+) False G125626
TU168969 lncRNA downstream 7117 20492178 ~ 20496215 (+) True G125627
XM_039818301.1 mRNA upstream 7189 20389518 ~ 20471524 (+) True col4a2
XM_039817786.1 mRNA upstream 213123 20174827 ~ 20265590 (+) False myo16
XM_039817239.1 mRNA downstream 165 20485226 ~ 20490509 (+) True ing1
XM_039818459.1 mRNA downstream 59316 20544377 ~ 20554354 (+) True sik1
XM_039817758.1 mRNA downstream 156151 20641212 ~ 20649166 (+) False gabpa
XM_039817759.1 mRNA downstream 156339 20641400 ~ 20649166 (+) True gabpa
XM_039818880.1 mRNA downstream 214170 20699231 ~ 20706004 (+) True piga
XR_005640959.1 other upstream 213475 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other upstream 213565 20174828 ~ 20265148 (+) False myo16
TU168229 other upstream 1774185 18703028 ~ 18704528 (+) True G125079
XR_005640963.1 other upstream 2461300 18010757 ~ 18017413 (+) False hnrnpa3
XR_005640990.1 other upstream 2597987 17860753 ~ 17880726 (+) False hoxd10a
TU168970 other downstream 7117 20492178 ~ 20521274 (+) False G125627
TU169140 other downstream 368028 20853089 ~ 20858910 (+) True mpc2b
TU169142 other downstream 375091 20860152 ~ 20865442 (+) True G125757
XR_005641085.1 other downstream 1134287 21619348 ~ 21627452 (+) False sox1a
XR_005641000.1 other downstream 1170070 21655131 ~ 21688802 (+) False LOC120569986

Expression Profile