RNA id: XM_039818602.1


Basic Information

Item Value
RNA id XM_039818602.1
length 3181
RNA type mRNA
GC content 0.44
exon number 2
gene id ackr3a
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19491511 ~ 19498560 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGCGTAGCTCCTCGGAGTATCGACAAGTGCAGAACAAGGAACAGACTCCGATTCATTTAAGGAGGCGGAGGGTTGCGCACACAAGTTTACCGCAGTGGAGTTGAAGTTACCCTTCATCCCCCAAAAcgaaaacaaatctcttctttTAAAGAGGAGACTTCAGCGAGGGAGCAGGAATCCAAAACAAGTTCTATCCCAGTCagaagtggtgtgtgtgttacctcccAGTGGTCTGTGGTCCTCTCCCAGTGCTGAAAAATGAGTCTGAGCACAAGTGATCTGGAGGACTTTTGGGAGTCGTTGGGGGAGTTCAACTTCTCAGAAGCCTTTAGCAACATAACCAGTGTGGATGCAATGGTGTGTGCCACGGCTTTTAACCGCAACGCTCTGCTCTACTCAATGTGTGTCCTCTACACTTTTATCTTCATTGTCGGTCTTGCTGCTAACGCTCTGGTCCTCTGGGTAAACATCCGTGCACAAAGAGACTCCACCCCTCGCCATGAGACACACATGTACATCGCCCATCTGGCAGTCGCAGACCTATGTGTGTGCGCCACCCTGCCTGTGTGGGTGAGCTCGCTGGCCCAGCATGGCCACTGGCCCTTCGGTGAGGTGGCGTGTAAACTCACACACCTTCTGTTCTCCGTCAACCTCTTCGGCAGCATCTTCTTCCTGGCCTGCATGAGCGTCGACCGCTACCTAAGCGTGTCGCAGCACGGAGACAACGAGGGAGGGGCGCGCAGGAAGCTAATCCGTCGTGGCGCTTGTGTAGGGGTGTGGCTTCTGGCTCTGGTCGCCTCCCTGCCAGACACCTACTTCCTGCGTACTGTGAAGTCAGCACATGGGGACACCATGCTGTGCAGGCCTGTGTACCCGGGTGAAAACCCCAGGGAGTGGATGGTGGGCGTGCAGCTGAGCTTCATCCTGCTGGGCTTTGTTCTCCCCTTCCCTGTCATTGCAGTGTTCTACGCCCTGCTAGCCAGAGCTTTTAcccactcctcttcctcttcaccCTCTTCCACAGTGGAGCAGGAGCGTCGTGTGAGCCGCAGGGTGATCCTGGCATACATCGTGGTGTTTCTGGGCTGCTGGGGGCCCTACCACGGTGTCCTCTTGATTGATGCCCTGTCTCAGCTGGGCCTGGTGCGTCTGACCTGTGGCCTGGAGAATGTGATCTACGTGGCCTTACACCTCACCCAGTGCCTGTCTTTGCTCCACTGCTGTTTTAACCCCATCCTCTACAACTTCATCAACAGAAACTACCGCTATGACCTCATGAAGGCCTTCATCTTTAAATACTCCACGAGGACAGGCTTGGCACGCCTCATAGATGCTTCCAACATGTCTGAGACTGAGTACTCTGCTGTAGCTGTAGACAACCCACCACAGATCTGAAATGTACAAAACTCAAATAGCATTTCTTGAACACTGTTTCTAAATCTACATGACTATAATGCAATATAAACATATGTTTTATATCTTATCAGAATTTGTCCACACTCAGCATTCTTTGTACAGAAATCTGCTTGAGTCATGTAGAAAAGATTGAAGACAGGCTAATATCAACGACCAATTTTAAAGCACTTAGAAAGCAGTTGTATTATAACAGTGAAATGATATGGATATTGTCACTCATTTGTAAAGCCAAATCAGTGGCTATGTGTAAAATCATtgcgtgtatgtgtttgtgtgtgtgtgtgtgtgtgtgtgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagtgtgtatggTGTGCATAATCTGACAGACTTTGGATATCGATAGTATCAGCAAAGTAATAttgttaatcttttttttattatcaagttgtatttatatactgtacatttgaacTGTTTTGCCTCTTTCATGTTGTAATTCAAAGTCTTCACACACTGACGTTGCTCAGTGCTCCACTTCATACAATGCTGCTTTATCATTTTAGTCGAGCCACTGACGGGCTCAGTGTTTTAGTCCTGCTGTCTCATTGTTAATCATAACCTCATGTCACATCAGTTGAATCCTACAGACAAATAATTTAAATCAATTTTGAGTCTGTCCCGCAACTCAGATTTGTTAATGaactaaaaaaaagtgtgttttctgtgttgcaTAGTTTGAGGaattttttttggacaatttgctAAGAGTtagataccactctcatgtctttacactaaatatgaagctacagccagctgTTGATaagctcagtgtgtgtggttctgtccgaaagcaaacaaaaaacTATGTTTACCAGCACCTCCAAAGCACACTTAATACCACGTTaaatttgtttgtttacaaaaaacatctttttgGGAGGAGAATTATGTGCTGCATTATATCTTGGCTGGACACATTATCAGTTTTTGCACcaagctaagctaagataatCACATGCTGGctttagcttcatatttagcgtacAGTCATGAGAGTGGCACTGTATTGACCTCCTCATCTACTGTAGCTCTTtacaagaaagaaaataagcGTATTTTCCAAAATTCAAACTGTTCCTTTGAAGAAAGCCAAGGTGTTCCAAATATTTCCAAGCATTGTCTGGAGGCTTCAACTGGGACTACTGAGCTTATAGAGCAGATAGATGTAGCTCCTGTGTATTCTGAAACGTACAGTATTACGTAATATACTGTCActatatttaaaagaaatttttatgaccaaataacATGAATAAAAAGCTTCACTACTTCCACATAAGCAGCAGCTGTGGTGTGTAACAATTGTTGTAAAAGGGACCAAATAACAAAGAGAAAACCATCACGGCATTACTTTAGAGatttgtgtacacacacacaaatctctaaagtaatgtaaagtgtgtctgtgtgtgtgtgtgtggtgtgtgccaCAGCTTGACAAGAGAGAGAAATTACGTTTTATGTGTCATAAACATTGAGTTATACAGTTTACTCACGGTCCCTGTTGTAGGAAGCAACATATTCTTTTAATATGCTGACATAGAGCACATTGTGTCATGTGATTGGTTACACATGTATGCTTTTACACTGAAAAGATTTCATGTTGCGATCAGAAAAGACCGGAGAAACGAACATGTGTCTACAAGAACAGAGGCATTCCTTTCTTATAGTAATGTGTAACATGtgttttgttatattaaatacagaaaaaatg

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0006935 chemotaxis biological_process
GO:0001525 angiogenesis biological_process
GO:0070098 chemokine-mediated signaling pathway biological_process
GO:0001570 vasculogenesis biological_process
GO:0016021 integral component of membrane cellular_component
GO:0015026 coreceptor activity molecular_function
GO:0004950 chemokine receptor activity molecular_function

KEGG:

id description
K04304 CXCR7, ACKR3, RDC1; C-X-C chemokine receptor type 7 (atypical chemokine receptor 3)

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168547 lncRNA downstream 32266 19454417 ~ 19459245 (-) True G125299
TU168538 lncRNA downstream 51660 19439426 ~ 19439851 (-) True G125295
TU168537 lncRNA downstream 55464 19435642 ~ 19436047 (-) True G125294
TU168536 lncRNA downstream 59080 19432064 ~ 19432431 (-) True G125293
TU168460 lncRNA downstream 257890 19231992 ~ 19233621 (-) False tbl1x
TU168559 lncRNA upstream 49155 19547715 ~ 19550418 (-) True G125311
TU168569 lncRNA upstream 71050 19569610 ~ 19570807 (-) True G125315
TU168673 lncRNA upstream 179441 19678001 ~ 19680728 (-) True G125398
TU168691 lncRNA upstream 231895 19730455 ~ 19730711 (-) True G125411
XR_005640851.1 lncRNA upstream 283533 19782093 ~ 19782621 (-) True LOC120569251
XM_039817709.1 mRNA downstream 22779 19465724 ~ 19468732 (-) True rpe
XM_039817069.1 mRNA downstream 136221 19349763 ~ 19355290 (-) True klhl6
XM_039819030.1 mRNA downstream 142452 19338941 ~ 19349059 (-) False LOC120570610
XM_039819029.1 mRNA downstream 142452 19338941 ~ 19349059 (-) True LOC120570610
XM_039819106.1 mRNA downstream 241277 19231987 ~ 19250234 (-) False tbl1x
XM_039817121.1 mRNA upstream 52766 19551326 ~ 19556641 (-) True casq2
XM_039818776.1 mRNA upstream 58950 19557510 ~ 19559519 (-) True LOC120570428
XM_039818774.1 mRNA upstream 72311 19570871 ~ 19575591 (-) True LOC120570427
XM_039817493.1 mRNA upstream 196891 19695451 ~ 19702019 (-) False acp6
XM_039817492.1 mRNA upstream 196891 19695451 ~ 19702019 (-) False acp6
TU168242 other downstream 786834 18703095 ~ 18704677 (-) False G125090
TU168244 other downstream 786834 18703129 ~ 18704677 (-) False G125090
TU168243 other downstream 786959 18701648 ~ 18704552 (-) True G125090
TU168240 other downstream 791709 18695480 ~ 18699802 (-) True G125089
TU168581 other upstream 97369 19595929 ~ 19597521 (-) True G125326
XR_005640980.1 other upstream 254483 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168717 other upstream 291971 19790531 ~ 19796038 (-) False LOC120570223
TU168785 other upstream 422794 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168944 other upstream 960602 20459162 ~ 20461629 (-) True G125619

Expression Profile