RNA id: XM_039818606.1


Basic Information

Item Value
RNA id XM_039818606.1
length 4526
RNA type mRNA
GC content 0.53
exon number 23
gene id LOC120570318
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16013565 ~ 16096337 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CGATCGTCTTCTTCTTACCGACTATGGAGGCGCGTTTCACTCTTCCACATGCATGGGACTAAACTACGGGAGTTTAACGATCAAGTTTCATGTTCCAATGTAGATCCGTGCAGGCAGCGGAACAACAGTTCTCCCAAGGAAGAATGCCAGCTCCTGAGCAGAGCCCAGTGACGGAGGAGGGGCTTCTGCTGACCATCCGCGACAGTTCAACTCGCCGCAACATGGATGCCGACAACACCGCCAACAACATCCTGGCGTCCGTCAAAGAACAGgAGCTCCAGTTTGAGCGGCTAACCAGGGAGCTGGAAGTGGAGAGGCAGATTGTGGCCAATCAGCTGGAAAGATGCAGACTCGGGGCGGAGTCGCCAGGCGCTGGTAGCAGCAGCTCGTCTGAGAAGTCCCTGCCTTGGAGAACTGCAGatgCCTCCGCCTTGGGGGACACCAAGTCTCGGGTGACTGACAGCTCACAGTCGCCCAGCTACCGCATCAGGACTGAGTCAGAGCAGGTGTCTCTGTACTCCCCGGAGCAGTCCTCCCTCCATGAAACCTTTTTCTGTCACGCTCTTTCAGGATCCGCGGTGAATTCACGAAGCTCAACTCAGATGAACTCGTACTCAGACAGTGGCTACCAGGATGCCAGCAGCGGTTACCTCAACAGCCAGAACCTGGGCAAGGCTGAGCTGAGGATGCAGCATTCCTTCCCTGGCACCGGAACTGGTACCATGGGAAGGAATACCAGGGCCGAAGGCCAGGCTTCAGCCCAGGCTCCAGCAGTCACAGCAGCAGTGCCGGGTCGTGCTATGCGGAGGGTAAGCTCAGTGCCTTCTCGCTCTCACTCGCCAGCCTATGCCAGCAGTATGTCACCCTCCCGCGGCTCCCTGCGTACCTCAGGTGGCAGTGCCTACGGCTCCCCCATTGTAACTGAACCCAAACCCCTCTCCAGCATCTTCTCTACAACCTTGCCCTCGGCCCAGCGCACCAGTAACACCGGCGGGGGTGGCAACAGCCCACCCTACTCCACGCAGAAAAACTCCCCCGCTGCGCTGCGACGCATGGGCTCCACGAACTCTCGCTCAGGCAGTGCCAGCCGTACAACCTCGCCGTATCAGGCCTCTGCGGGGTCAACATCAGGCCGCATGGGCTCGCCTCTGACAATGGTGGAGAGCATCAACCCTCCACTGACTAAGCAGCCTACCCACTCGTCGTCTCCAGTAAGGGCTAGTATGACCGCTGTGCCCCAGCACTACAGCTCTACTCTGCCGCGCTCCATGCTCCACAACACTGACCCCTATGGACCCCAGAGTTACGACATTTACGAGAGGATGACGCGACCTGACAGCCTCACAGGAATACGGAGCTCATACGCCAGTCAACACAGCCAGCTGGGCCAGGACTTAAGGTCAGCCATGTCCCCAGACCGCCACATTGCACCAATCTACGAGGATCGGACGTTCCAGGGCCCTTTGTACCGTAGCCCCAGCCACACCCAGCAGGGCACCCTCTACAGGAGCACGTCAGGTGTGGGGAGTCTCCAGCGGACACCCAGCCAGCGGAGTACCATGATCTACCAAAGAAACAACTATGCTCTTAACACAGCAGCCACCTATGCTGATCCGTATCGCTCAGCACAGTACCGGCCCTCCGATCCCAACTGCGCTCGTCAGGCTGTTGTCGTGGATGATGGTGCTACCCGCTCACCCTCTATAGACAGCATCCAAAAAGATCCCAGGGAGTTCGCTTGGCGTGACCCAGAGCTGACAGAGGTGATTCACATGCTGCAGCACCACTTTCCCTCGGTGCAGGCCAACGCAGCGGCCTTCCTGCAGCACCTGTGCTTTGGCGATAATCGAGTTAAGTCTGAGGTGTGTCGACTGGGAGGAATTAAACATCTGGTGGACCTGCTAGACCACAAGGTCCTTGAGGTCCAGAAGAACTCTTGTGGTGCTCTGAGGAACCTCGTTTATGGGAAAGCTATGGATGAGAACAAGATCGCTGTGAGGAACGCAGGAGGTATCCCAGCTCTGCTCCGCCTGCTGAGAAAAACTGTAGATGCAGAAGTGCGGGAGCTTGTCACAGGGGTGCTGTGGAACCTGTCGTCATGTGACGCCGTCAAGATGACAATCATTCGGGACGCCTTAACGACTGTAACCAACACTGTGATCATCCCTCACTCTGGATGGAGCAGCTCCACCTTTGATGACGACCACAAGCTGAAGTTCCACTCCTCCCTGGTGCTGAGGAACACCACAGGCTGCCTGAGGAACCTGAGTTCAGCTGGTGAGGAGGCCAGAAAACAGATGCGGGTTTGTGAGGGCCTGGTTGACTCACTACTCTACGTCATCAAAGCCTGTGTTAACACCTCTGACTTCGACAGCAAGATTGTGGAGAACTGTATTTGCACTCTAAGGAACCTGTCATATCGTCTGGAGCTGGAGCTGCCGCCATCCCGGCAGATAGGGGGGGAGGAGCTAGACGGCTTACTAGAGAAGGAGTCGCCCagaaaagaggggggggggggggggagaaaaaaaaaaaagagcttgcAGGAAGACACCTGGGACGGTGTGGGACCCATCCCCGGCTTCTCCAAGTCTCCCAAGGGGGCAGAGATGCTATGGCACCCCTCGGTGGTTAAGCCTTACTTGACACTGCTGGCTGAGAGCTCAAATCCTGCCACTCTCGAGGGCGCCGCTGGGTCACTTCAGAACCTGTCAGCCGGCAACTGGAAGtTTGCAGCATACATTCGTGCAGCAGTGCGTAAGGAAAAGGGTCTGCCCATCCTAGTGGAGCTGCTGCGGATGGATAACGACAGGGTGGTGTGTTCAGTTGCCACTGCTCTGAGAAACATGGCGCTGGATGTCAGGAACAAGGAGCTCATAGGGAAGTATGCGATGAGGGACCTGGTCAATCGTCTCCCCGGGGGAAACACCACCCTGCTGTCAGACGAGACGGTGGCGGCCATCTGTTGCACCCTGCACGAGGTCACCAGCAAAAACATGGAGAACGCCAAGGCCTTGGCTGACACGGGCGGCATTGAGAAGCTGGTCAACATCACCAAGGGCAGAGGAGACAGGTACTCTATGAAGGTGGTAAAAGCAGCTGCTCAAGTGCTGAACACACTGTGGCAGTACCGGGATCTGCGAACCATCTATAAGAAAgatggatggagccaaaacCATTTCCTCACTCCAGTGTCAACACTTGAACGGGACAGGTTTAAGTCCCAGCCCACCCTCCCCACCAGCACCATTCAGATGTCCCCAGTCAACCACCCTGCTGTCAGTGCCACGTCGTCTCCTGCCATGCTGGGCATCAAAGAGCATAGAGACACTATCAGAGATTACCAGAGAGCACAGTCAACTATGCAATTTTATAATTACCAAGGGGACAACAGTATCCATAAAAAGCAGTATACAGgGTCTGGAAAACCTTCTCCATATTATTACTCATCCCCCACAAGAGAGGAGCCCCGAAGAACACAGCCTGTGTATTATACAGAGGAGCCTGGCAGGAGGAACTACGACACGTACAGAATGTACCTGCAGCATCCCCACGGCTACGACGACCCTTACTTGGAGGAGGTCATCACCTACCCGCCCACAGTCGACTACAGCTCCCAGCCTCACGGACTGAAATCAACCACCAACTATGTGGACTTTTACGCTAGCACGCGGAGGCCGTCCTACAGGGCGGAGCAGTACCCTGGCTCTCCTGACTCCTGGGTATAGGCCTGGAGCCACTCCTGAGGGGCGTCTCCTCCCCTCAGCCGAGGCGAGGAGCCCGGGGAGCACACAAGaaccgacaaaaaaaaaaataacgtttTCATGAACTTGGCTTCAtaagtgtgtttgttttaaagtgaatgcctgtgtgtgtgaaggatgAATTCAACTGAGCGATAGCAGATGGAAAGATGGAATGTGTGCCAAAGAAGGAAATCAaggaatgtttttgtttttttaatattatttttaaatttagtaGAGGAAGATGGAATCATGCTGGGGATCTGTTGAGGGACGGGACCATACGCTACAGCGAGGAGACGTGCGTCCTGCTCTGTCTAGATgttagttttattttctttatgaaACTCTTAGCTGTGATAGCATGGTGAAAGGTGCGAGTCATGTGAGCGAGGGTCGGTGGTAAGAGTCAAGATGGGGAATGTGTATGTGCTGAAGCCAAAATGGATCATGGACTCATATTcgttaaaaaaatgaataaataaataatagtaaACTAATGATGTTAGATTGTACAGAGGGATCAAATTGTATCTGTACTTTATGTTGAAGCTGTGTAATGCCATGGAGTCTtgtacatttatttcattttattgtaaatactgaaaaaaaaaaaacatgttaccTGGTTTACACTCATCAgcactggtttaaaaaaaaaaagaaacgtgcCATGTCAAATCTCtatagatatataaatatatgaagaAATATGTGGACAAAGATGGCATCATAACACAACCAtgctaaaataataaaaggtcagttttgttttttaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167099 lncRNA upstream 35711 15970982 ~ 15977854 (+) False LOC120570321
TU167069 lncRNA upstream 101137 15912215 ~ 15912428 (+) True G124229
XR_005640866.1 lncRNA upstream 122559 15888137 ~ 15891006 (+) True LOC120569337
XR_005641030.1 lncRNA upstream 273607 15715606 ~ 15739958 (+) True LOC120570206
TU167012 lncRNA upstream 352706 15659407 ~ 15660859 (+) False galnt13
TU167186 lncRNA downstream 184262 16280599 ~ 16280878 (+) True G124323
TU167189 lncRNA downstream 184607 16280944 ~ 16285287 (+) True G124325
XR_005640929.1 lncRNA downstream 208426 16304763 ~ 16310641 (+) True LOC120569637
TU167209 lncRNA downstream 284910 16381247 ~ 16381693 (+) True G124339
TU167248 lncRNA downstream 318272 16414609 ~ 16416452 (+) True G124371
XM_039818611.1 mRNA upstream 32666 15978286 ~ 15980899 (+) True upp2
XM_039818612.1 mRNA upstream 35691 15973261 ~ 15977874 (+) True LOC120570321
XM_039818613.1 mRNA upstream 35691 15973261 ~ 15977874 (+) False LOC120570321
XM_039818616.1 mRNA upstream 103713 15902687 ~ 15909852 (+) True LOC120570324
XM_039818964.1 mRNA upstream 316991 15668278 ~ 15696574 (+) True kcnj3a
XM_039818861.1 mRNA downstream 2939 16099276 ~ 16101642 (+) True dap1b
XM_039818983.1 mRNA downstream 9099 16105436 ~ 16207591 (+) True tanc1b
XM_039818986.1 mRNA downstream 9099 16105436 ~ 16207591 (+) False tanc1b
XM_039818984.1 mRNA downstream 9099 16105436 ~ 16207591 (+) False tanc1b
XM_039818987.1 mRNA downstream 9099 16105436 ~ 16207591 (+) False tanc1b
XR_005640926.1 other upstream 857679 15138477 ~ 15155886 (+) False trpm2
TU166397 other upstream 1779495 14233332 ~ 14234070 (+) True G123742
TU166312 other upstream 2336219 13635586 ~ 13677346 (+) False cps1
TU166270 other upstream 2659480 13353306 ~ 13354085 (+) True G123633
TU166170 other upstream 2733699 13049758 ~ 13279866 (+) True G123539
TU167128 other downstream 2934 16099271 ~ 16101611 (+) False dap1b
TU167490 other downstream 901444 16997781 ~ 16999532 (+) False col28a2a
XR_005641003.1 other downstream 1031544 17127881 ~ 17177640 (+) False myo3b
XR_005640989.1 other downstream 1763823 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other downstream 1764416 17860753 ~ 17880726 (+) False hoxd10a

Expression Profile