RNA id: XM_039818611.1


Basic Information

Item Value
RNA id XM_039818611.1
length 1803
RNA type mRNA
GC content 0.42
exon number 7
gene id upp2
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 15978286 ~ 15980899 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GTTACAGCTATATCAGCTCTGCAGTCAGACGTATCTCGTATTTAGAAACAGCTGCAACGAGTATCTGGAGGTTTTACAGAAGAACAACTTTTGAAGACattttatatttgattttaAAGCAGTCATGGCACCAATTATACTTGACCATATGGGGAATGACCAAAATGAGTATATCAAACAACACGTCCAAGTGAAAAATCCTTACTTGGACACCATGGAGGAGGATATTCTCTACCATTTCAGCTTGAGCACCAAGACTCACAACCTCCCAGAAATGTTTGGAGATATTAAGtttgtgtgtgttggaggcAGCGCAAATCGTATGAAGGCTTTCGCCCAGTTTATCCACCAGGAGCTGGAACTGCCTGGAAACCCAGAGGAAGTCAGAGATATCTGTGAGGGAACTGATCGCTACTGCATGTATAAAGTAGGACCTGTGCTTTCTTTAAGTCACGGCATGGGTGTCCCTTCCATCTCCATCATGCTGCATGAGCTCATCAAACTGCTGCACCACGCTCAGTGCAGTGATGTGGTCCTGATTCGCCTTGGTACATCCGGTGGAGTCGGTCTGGCTCCAGGGACGGTGGTGGTCACGAATAAAGCAGTGGACTACTCCTTCCTTCCCCAGTTTGAGCAGGTGGTTCTGGGTAAAGTCATTACCAGGAGCACTGAGCTGGATGAGGGAGTGGCCAATGAGcttctgcagtgctctgccGAGCTTCAAAGCTTTCCTACGATGATTGGAAACACCATGTGCACCCATGACTTCTATGAAGGTCAAGGCCGACTCGACGGCGCGCTCTGCTCCTTCTCTCATGAAGAAAAACTGGAGTATCTGAGGAAAGCTTATGAGGCCGGAGTGAGGAATATTGAAATGGAGTCCACTGTATTTGCTGCTATGTGCCGTGTCTGTGGCGTCAAAGCGGCTGTGGTCTGTGTTGCATTGCTGAACCGCTTTGACGGAGACCAGATCACCTCCCCCCACGATGTTCTGGTGGAGTACCAGCAGAGACCTCAAGTCCTGGTGTCCCACTTTATCAAGAAACGCCTGGGACATATTGTCTGAGACCCCTACATCTCCCATCCTATCCCAACCCCAGCCTCTCAAATGTGTATATAGCTGATATGTGGATATGTATATACATAACATGTTAATATGTGTGTTAGACACTTAtttaaaacattgttaaaatgtttaagATTTCATTGATGAAGCTAAAATATTAAGTGTGTCGCATACGTATATGTTAGTATGTACAGTATTGtatcttttaatatttaacactgtTATTTATGTAAGGTTACATTAATTTTCTAAAGAATAGTACTGTATGTTGATTTTAATATTTGACTTACACTTATAACTATAGTTATAACTAACTATGTATTAGCAAGTTGGTAAAATGATCGCCCTCCATTGGAGGTTTGCAATCTGTCAGCAGCCTCTAGTTATAAAGGTTTTTCCTCCTATATGCTTGTTAGATGGGAAGTATTAGTCCTTAGTGGTTTCCCTCATGATACAAGAAGATGAAGTGGGCCTTCCTACAATGTATTTCAGTGATGAATGTGTTATCAGATGACTAGAGgcatacattacattttagttgCTACTGCCACACAAGCTTGTTTATGCAAATGCGAACTTCCTGAAACTAACATAAGCGGTCAATAAATATTGATAAATGTGCAGAGGTGATTTGTTTGAGGTACATGTTTATCATTACTCAGTGATACTGTATGACACTGTATAGCTCATGAGATGCTGTAGAATACATAACCTTCAATAAAAGTCAATAACAGTAA

Function

GO:

id name namespace
GO:0009116 nucleoside metabolic process biological_process
GO:0009166 nucleotide catabolic process biological_process
GO:0005737 cytoplasm cellular_component
GO:0004850 uridine phosphorylase activity molecular_function

KEGG:

id description
K00757 udp, UPP; uridine phosphorylase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167099 lncRNA upstream 432 15970982 ~ 15977854 (+) False LOC120570321
TU167069 lncRNA upstream 65858 15912215 ~ 15912428 (+) True G124229
XR_005640866.1 lncRNA upstream 87280 15888137 ~ 15891006 (+) True LOC120569337
XR_005641030.1 lncRNA upstream 238328 15715606 ~ 15739958 (+) True LOC120570206
TU167012 lncRNA upstream 317427 15659407 ~ 15660859 (+) False galnt13
TU167186 lncRNA downstream 299700 16280599 ~ 16280878 (+) True G124323
TU167189 lncRNA downstream 300045 16280944 ~ 16285287 (+) True G124325
XR_005640929.1 lncRNA downstream 323864 16304763 ~ 16310641 (+) True LOC120569637
TU167209 lncRNA downstream 400348 16381247 ~ 16381693 (+) True G124339
TU167248 lncRNA downstream 433710 16414609 ~ 16416452 (+) True G124371
XM_039818612.1 mRNA upstream 412 15973261 ~ 15977874 (+) True LOC120570321
XM_039818613.1 mRNA upstream 412 15973261 ~ 15977874 (+) False LOC120570321
XM_039818616.1 mRNA upstream 68434 15902687 ~ 15909852 (+) True LOC120570324
XM_039818964.1 mRNA upstream 281712 15668278 ~ 15696574 (+) True kcnj3a
XM_039818324.1 mRNA upstream 320013 15618514 ~ 15658273 (+) False galnt13
XM_039818606.1 mRNA downstream 32666 16013565 ~ 16096337 (+) True LOC120570318
XM_039818861.1 mRNA downstream 118377 16099276 ~ 16101642 (+) True dap1b
XM_039818983.1 mRNA downstream 124537 16105436 ~ 16207591 (+) True tanc1b
XM_039818986.1 mRNA downstream 124537 16105436 ~ 16207591 (+) False tanc1b
XM_039818984.1 mRNA downstream 124537 16105436 ~ 16207591 (+) False tanc1b
XR_005640926.1 other upstream 822400 15138477 ~ 15155886 (+) False trpm2
TU166397 other upstream 1744216 14233332 ~ 14234070 (+) True G123742
TU166312 other upstream 2300940 13635586 ~ 13677346 (+) False cps1
TU166270 other upstream 2624201 13353306 ~ 13354085 (+) True G123633
TU166170 other upstream 2698420 13049758 ~ 13279866 (+) True G123539
TU167128 other downstream 118372 16099271 ~ 16101611 (+) False dap1b
TU167490 other downstream 1016882 16997781 ~ 16999532 (+) False col28a2a
XR_005641003.1 other downstream 1146982 17127881 ~ 17177640 (+) False myo3b
XR_005640989.1 other downstream 1879261 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other downstream 1879854 17860753 ~ 17880726 (+) False hoxd10a

Expression Profile