RNA id: XM_039818618.1


Basic Information

Item Value
RNA id XM_039818618.1
length 4599
RNA type mRNA
GC content 0.46
exon number 20
gene id pde11a
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18066018 ~ 18112342 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCAGCATCATTTGCACACAAGAAGACCCATTCGACGGTTATGTTCGGTAGTGGCTCTTTATGAGATTTCCAATGCTTGTGAATTTAGTCAACGCGAGCCTCAACTTCCTTTGCTCAGATCTGCTTTAATGTTCTTAAAATAAGTGAACGATGTGAAGATGCTGTGGAGGAATATGTTGGTGCGCAAAGGGAGTCTCCATCCATCCCCTTACAGAGTGGAAACTGGATATGTAGCCAGAGCTTCAGGGGTTATTCCAGCATAATGCATCCTGGAAGTTATGATGTTCAAATGATTCTCTACTTTAACTCTAAAGCCCCATAAATGATATTTCTCTGCGCAACTTCATGGATTTGGTTCACTGAGGACCATCTGAAGAACAGACATGGCAGTGCCAACTATGGTGTTCTCTGACGTGGAAAGTTTTCTGGACTCGCATCCCGATTTATTCGAGGACTACCTGAACAGAAAGGGGAATTTTAGCATGGTGGAGAAATGGCTCAAGAATCACCAGGCGAGCAAAAGTCCGGTGGCTGCAGCTCCTGCCGAGCCGGGAGAAGAGAAGAGCAACGCGTGCAAGAACAGCTGGGCAAGCAAATGTGATGGTCTACAAAGAAGAGCCTCGCAGAAGGAGCTGCGCAAAACTTTCGCCAGATCAAAGGTCATCAATGTCAACAGAACATACGACGAACATGTTAATTCCAGGGCCCAGGAGCCCCTAACGAGCATGAGGAGGAGAGCTCTGCTGAGGAAAGCGAGCTCTCTGCCCCCGACCACTGCGCACATACTGAGCGCACTGCTGGAGTCCAGAGTCAACATCCCCCAGTACCCGTCCACAGCCGTGGATTTTAAATATTATCTCAAAGAACACAACGAAAGAGAGTTTTTCCTGGAGCTTGTAAAAGATATATCTAACGACTTGGATCTAACGAGTCTCAGCTACAAAAtccttgtgtttgtttgtattatgGTCGATGCAGACCGGTGCTCCTTGTTTTTAGTGGAGGGAACGGGCAACAAGAAGACATTAGTGTCCAAATTATTTGATGTGCACGCGGGCACCACAGTTTTACCCTCAATGAAATCAGATGAAGTTCAAGTGCCGTGGGGGAAAGGAATCATTGGATATGTGGCTGAACACGGAGAGACAGTGAACATTTCTGACGCTTATCAGGATCGTCGGTTCAGTGATGAAATTGACAAGCTGACAGGGTACAAAACCAAGTCACTCTTGTGCATGCCCATTTGCAACAGTGATGGAGAGATAATTGGAGTTGCTCAGGCCATCAACAAGACTTCAAGTGGAGAACTCTTCACTGAAGATGATGAAAAGGTGCTGCAGATGTACCTGCCCTTCTGTGGTATTGCGATCTCCAATGCCCTACTCTTCGCAGCCTCAAGGAAGGAGTATGACAGGAGTCGGGCACTCTTGGAGGTTGTCAATGACCTGTTTGAAGAGCAGACTGACCTAGAGAAGATTGTCAGGAAGATCATGCACCGTGCCCAGACATTGCTAAAGTGCGAGCGCTGCTCTGTTCAGTTGCTGGAGGACATTGAGTCACCGGTGGTGAAGTTCACCAAGTCGTTTGAGCTACTGTCCCCTAAGTGTAGTGCAGACACTGAAAACAGTTTCAAAGACAGTATGGAGAAATCGTCTTACTCAGACTGGCTCATCAACAACAGTATCGCAGAGCTGGTAGCATCCACAGGACTCCCTGTGAACATTAGTGATGCCTATCAGGATCCTCGCTTTGATGCTGAGGCACACCAGTTCTCAGACTTCCACATCCGCTCTGTGCTTTGTGTTCCCATATGGAACAGCAACCACCAAATCATTGGTGTTGCCCAAGTGCTGAACAGGCTCGATGGGCAACCATTCAACGATGCAGACCAGCGTCTCTTTGAAGCGTTTGTGATCTTTTGTGGACTGGGCATCAACAACACCATCATGTATGACCAGGTGAAGAAATCCTGGGCCAAGCAGTCTGTGGCTTTGGATGTTCTGTCTTACCATGCCACTTGCTCCAAGACTGAAGTTGACAAATTCAAGGCAGCTAACATTCCCCTGGTTTGCGAGCTGGGCATCGATAAGCTCTACTTTGACGATTTCTCCCTGGACGTTGACGCCATGATAACGGCCGCTCTGAGAATGTTTATGGAGTTGGGAATGGTGCAGAAATTTAAGATTGACTATGAGACACTGTGCAGATGGCTGCTGACTGTCAGAAAAAACTACAGAATGGTTCTCTATCACAACTGGAGACATGCCTTCAACGTCTGCCAGTGCATGTTTGCCATGCTAACGACGGCAGGTTTCCAGGAGACTCTGACAGAGGTGGAGACCTTAGCGCTTATTGTAGGTTGTGTGTGCCATGACTTGGACCACAGGGGCACCAACAACGCTTTTCAGGCAAAgacgGGCTCAGCCCTTGCTCTGCTTTATGGGACCTCTGCTACACTGGAGCACCACCACTTCAACCATGCTGTTATGATCCTGCAGAGCGAGGGTCACAATATCTTCTCCAacctctcctccacagagtatAGCGACCTCATGCAGCTGTTGAAACAGTCGATTCTGGCCACAGACCTCACACTTTACTTTGAGAACAGAAACACTTTCTTTGAGCTGGTCAGCAAAGGAGAGTACAACTGGAATGTGAAGGCTCACAGAGACATGTGCAGATCCATGATGATGACAGCGTGTGATCTTGGTGCTGTCACTAAACCTTGGGAAATATCACGCAAGGTTGCAGAGCTGGTGACCAGCGAGTTCTTCGAGCAGGGCGACAGAGAGAGATCAGAGCTGAAGCTCACGCCCTCTGCCATCTTTGATCGAAACAGGAAAGATGAGTTGCCAGGGCTCCAGCTGGAGTGGATTGATGGAATTTGTGCGCCGCTGTACGAGaCTCTTGTCAAGTTGAATCCAAAACTTCAGCCGATGGTTGACATGATCAAAGCTAACAGGGCCAACTGGGAGGAACTGAACAGGAAAAGACAATGTGTCCAGAGTGTTTCTGCACCATCGAGCCCTTGCAGTGGAGACAGCACAGAAACAAGCGGCTGCACTGTGGCCAAAACAGGCAGCACACCCTGCTGCAGCGGCGATGCTGACGGCCCACCATCTAAACCTGTTAGTTAGCTTCTGATGCCATCTCCAAGCTGATCTCTTAGGCTTACTTCCTCTTAAATGCAGCCTGCAACAGAGGCAGTGCATGCAGAGGTTCTTGGGCTCTGCTCCTCTTCGCTTTTGCTGCTAGAGATGAGCTTTAGACTTGAGCGCGGCGCTATCATGGAGGTTTTTCGGCTCTCTTCGGCCTTCCTGTGCTGAAGGCTGACAGAGCTGTGTTTGGCGAGCTTATCGGTGCAGCTACAAATCAGCTGATGACACCACATCAGAAAGGAAGCTCAAACCACTGTGTTAACATGTCAACCAGTGAGCTAACACTAACTATTCTGGGCATTGCACAGATATTGGAGAGAGGAATGTTTGTCTCTGCTGTGGTTCGTTTTGCTCTTGGTACCTCCTCGTTGCTTGCATTTTGTCCGGGGGAACGGGgatattttttgtaaatctaTAAATAAGCTATTAAGTTATTTACAAGTGCTGTTTAAGAACATGTAAGCTCTGGATTGCAATGTGGCTGTAGAGTTTCTGAAGGATAAAGAGGTTCAGGAACAGCAAGACCTGTGACAGCGCTTGCAATGCAAATTGAGTGCTCCGCTCCCTCCCTTCCTGTGCCTTGTTTTAAGATCCTAATGAAAAATGCATGGCCTCCTCACCAAGATTCTTAGGTAGTACTGAAATCCATGTTGAACCATGACATATTTTTTGTCATAATTTATAAAAACCAATGACTGCAGTTATGTCTTGATCCCATCTTAGCCACAAAGcattactattattatattCATATAGAAATCTATTTTGCCCAATTTTATAAATGCAGGGTTTCACTtgtcacaacacaaacacacacaatgtgcCTTGATGAAGTTGTTCTAATATCACATTAATTTCTGCAGAAATTTCATCTACTGATTTAACATTGACAGCTGCAACATAAAGTAACGTTAAATTGAATATAAACTCACTAAACTACTTTGAAAAGAATAGTTTTGATATTTTAGGAAATATATTGAATTAAATGAGGAgcccactctcatatctgtctcctaaataaagctacagccagccGACAGGTaacttagcacaaagactataaacagagggaaacagcAAGCCTGGCTCTggaacaaaatccacctaccagcacctctttaattaaaatgttgtatTTAGTTTGTTTACAGAAATCTGACTATTTCTTGGACAGGACAAGCAACTTTCTGCAGCTGCccctggttgcctggcaacttgTCTGAGCCATTACCCCCTGTAAAACAACAAATTGTAATTTTTACTCTTTGGTTTTTGTACGAAGTAAACAGGatataaaatgttaatttgaGAGCTTTAGATGTGCTGCTAGGTGGATTGGTTACCTTTGTACAAAGCcaggctaagctaagctaaccagtagctttaaggcccagacacactgaccagacggctgaccctcggcagaaaaggcagttgga

Function

GO:

id name namespace
GO:0008152 metabolic process biological_process
GO:0007165 signal transduction biological_process
GO:0046872 metal ion binding molecular_function
GO:0004114 3',5'-cyclic-nucleotide phosphodiesterase activity molecular_function

KEGG:

id description
K13298 PDE11; dual 3',5'-cyclic-AMP and -GMP phosphodiesterase 11

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167930 lncRNA downstream 42541 18022409 ~ 18023477 (-) True G124872
XR_005640878.1 lncRNA downstream 243531 17737284 ~ 17822487 (-) False LOC120569506
XR_005640876.1 lncRNA downstream 243531 17737284 ~ 17822487 (-) False LOC120569506
XR_005640877.1 lncRNA downstream 243531 17737284 ~ 17822487 (-) True LOC120569506
TU167694 lncRNA downstream 715272 17347911 ~ 17350746 (-) True G124691
XR_005640987.1 lncRNA upstream 96396 18208738 ~ 18211956 (-) True LOC120569840
TU168246 lncRNA upstream 588545 18700887 ~ 18702962 (-) False G125090
TU168251 lncRNA upstream 588545 18700887 ~ 18702696 (-) False G125090
TU168245 lncRNA upstream 589390 18701732 ~ 18702696 (-) False G125090
XR_005641073.1 lncRNA upstream 703504 18815846 ~ 18819321 (-) True LOC120570508
XM_039817797.1 mRNA downstream 40810 18018079 ~ 18025208 (-) True nfe2l2a
XM_039817997.1 mRNA downstream 208966 17852869 ~ 17857052 (-) True evx2
XM_039817996.1 mRNA downstream 229932 17827078 ~ 17836086 (-) True lnpa
XM_039818977.1 mRNA downstream 333426 17730065 ~ 17732592 (-) False atp5mc3a
XM_039818978.1 mRNA downstream 333480 17730065 ~ 17732538 (-) True atp5mc3a
XM_039817109.1 mRNA upstream 1173 18113515 ~ 18115097 (-) False LOC120569287
XM_039817111.1 mRNA upstream 1173 18113515 ~ 18115092 (-) False LOC120569287
XM_039817110.1 mRNA upstream 1173 18113515 ~ 18115086 (-) False LOC120569287
XM_039817769.1 mRNA upstream 44390 18156732 ~ 18163749 (-) True prkra
XM_039817770.1 mRNA upstream 51841 18164183 ~ 18171021 (-) True casp10
TU167228 other downstream 1685253 16378609 ~ 16380765 (-) False gcgb
TU167157 other downstream 1964425 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 2648746 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 3072229 14984485 ~ 14993789 (-) True G123960
TU166600 other downstream 3276112 14784561 ~ 14789906 (-) False G123886
TU168094 other upstream 768 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 1168 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other upstream 1230 18113572 ~ 18115089 (-) False LOC120569287
XR_005640956.1 other upstream 44390 18156732 ~ 18163749 (-) False prkra
TU168240 other upstream 583138 18695480 ~ 18699802 (-) True G125089

Expression Profile