RNA id: XM_039818643.1


Basic Information

Item Value
RNA id XM_039818643.1
length 4711
RNA type mRNA
GC content 0.47
exon number 7
gene id stk17b
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 4513666 ~ 4526011 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCGCATGCGCCAAGCCGTGACGTGTCGCGAAAGTGTCAAACCGAAGGATGTAAAAATGATCGAAAACACTCGAGATAAACTTACTAAGATATTTAGTAGTCGCCCACAGCGGCAGTTTGGATAACTTAACCCCTGGAGTCAGCCGTAGCTGTAAATGTGATAGACTAACCACTCCTCTTCAGTTGAGCAGAGGAAATAGGTTTAACTCACTTTTGGACCCGCGACATTGACCGTCGAGCTAACTTAGTTAGCGACAGTTGAGCTAACCGGACTCGGTGAAGTAGCCAAACTAAACAGTAGCTAGCATGGTACCGTTAACCGGCTTATTTAACATTGCCATGTAGTTAATGTGAAACTGGCAGTGTAAACGTTAGAATAGCCACTTGGTTAGTTTGGTCGTTCGTCTCTCATTTAGCTTTCAGCGCGGTGACGTTAACGTATCCAGCTGGCAAGCAGGACTGACCTACGGAGAGAAGATGTCTCGGAGGCGGCTGGACAGTCGCAGCGGGCTCGCAGCTGGTCTGCTCGGCGAAATTCAGACCCCAATCAGCACGGAGCCGATGGAAAGTGTGTATGAAATCACTGGAGAGCTTGGAAGGGGGAAGTTTGCGGTGGTCAAGCGCTGTGTGGAGAAGGCCACGGGGAAAGTGTTTGCTGCCAAGTTCCTACGGAAGAGGAGGCGAGGCCGTGACTGCCGGGCCGAAGTGATCCACGAGATGGCCGTCCTGGAGGCGGCCCGTAACAACGCCCGAGTGGTCAACCTGCACGCGGCTTACGAGACCGATCACGACATTGTCCTACTGCTGGAATATGCGGCCGGTGGAGAGATATTTGACCACTGCGTGTCTGAGGAGCTGCTGCCAGAGGCCCAGATCACTCGTCTGATCAGGCAAACACTGGAGGGAGTCCACCATCTCCACCAGAGCAGCCTGGTGCACTTAGACCTCaagCCGCAGAATATTCTCCTGACCAGCCTGTGTCCTCCAGGAGACATCAAGATCGTGGACTTTGGCCTGGCACGCAGACTGGGCGCGGTTGGAGAGCTCCGAGAGATTCTTGGCACGCCTGAATATGTGGCTCCTGAGATCCTGAATTATGAGCCAATCACGACAGCCACTGACCTATGGAGCGTGGGTGTTATAGCCTACATGCTGGTGACGGGCGAGTCTCCGTTTGTCGGGGACGACAAGCAGGAGACGTATCTGAACGTGTCCCAGGTCAACGTGGACTACAGCAGGGAGGCCTTCTCCAGGGTGTCTGAGCTGGCTGTGGACTTCATCCGCAAGCTGCTGGTCAAGACCCCCGAGGACCGGCCCAGCGCTGCGGAGTGCATGAGCCACCCCTGGCTGTGGCAGCTGTGCCTCAGCCCCGACCACACCACCGCCACCCGCACCGTCCGCGACAGGAGCTGCGGCACCAAGTGGGCAGCGCCCCCCGAGGACCCCGAAGACAAGGAGAACTTCCTGGACTCGCCCCACTCTCACGCAAAAAGGTTTCGCTTCGACGAGGAAAGGCCCGCTGCTGGAGACGGTGACTTTtgaaaacgtttaaaaaatacaaaaaaaacagggcAGGGCAGGGGATGCTCACTCCTTCCTGTGAGCTTTTAAATTCTTTTAAGCCTCCAGAAAACCAGCAGTCCACTGTCACCACTCAAAAGTACTTAGGTTGTGTTTATATTTCACTAATTTTTCAAAATTCCAAGATCGACCATCCAGACCAAAGATAACCAGCTAAAATGTTGAGATCTTTCCGTGATCCAGCGCTGTTAAGAAGTGTGGaaattgtacagtatgtcttaaTGAATGCAGTGTGTTTAACCTGAAGTGTTCAATACCTTTCATTGTTCAAACCTCTGGTATTTTCAGAGCCCACTCTGTGTTGGGGCATCGTTGATCCTGTACTGATGAGGGCTAGTGTGGAGTATTTCTGGGGAAATCTATGCAATGCTTCTCTTGTACATTTTAAATCTATTTTCCTAAAACCTTAAAGAAGTTAGCAGCGCTCCGCCTTAAGCTCGGAAGTTAAGTGTTCTTATGCTTCAGCGGAAACGTGTGAGTGTGAGAATCGAGATAAGAGGAAGTGTGATAAATGTCCTCATTTGCATGCAGAAGAGACCGAGGGACAGCTGGACAGCTGCGTCACGGGGAAACGCTTTGACTCCGATTATGTTCTCGGCGCGTGGGTACCTGTCATTCAGTCACCATTTCATGGAAAATTCATAAAACATGGCTGCTGCCTATGCCTCAGCTCTATCTCTTACTACCTGCAACATGGCTGGATTTCACATCCAAGCTGCACGTGGCCATGAAAACACCCAGCAGAGAGGCTGACTTACACACAAGCCTGAAACATTCCTTATATGTTTGTCTCCATGTCTGCAATAGCACCAGGGTTTCTATTTAGCTCAGGATTTTATAAAACTCATTTTATTAATTCCAACCTTAGCGTAGTCCCCTTCCGAACAATTCTACTTCTCCCACATttattatgaattttttcaatGCCAACATGAGCAACAAATCCCGGTATTTTCCGGCATTCTCGTAAGATAGAAACTTAAAACTGTACACcggctgaaaaaaaaataacaaaaaacacaacccaAGTTGACTCATGCAGTTTTTCACATGCCACACCTACGCTTACTCAAATGATTTCCTCACCGAGCTGCAAGTTCCTCTTCTGTTGGCCGGAAAAAGAGAAACACAACTTTAGCACTTACTTCATCATCCCGCTTGTTGAACCGCTAagcaaaaaaggggggggggggagctgtTGAtgaaagtgtgtctgtgtgcttgttCCTGAGAGGTGGCCTCTCCAAAGCCATTCAGTGTCCTTTCTCTAAACGCTCCTCCAGTCCTGTTGGCTCAGGGTGCCCAAACTTATATTCCTGTTCTCATCTCAGGGCATGCTGCTCTCTGCTCACTTTGTATTGTATTCCTAATGTTATTCTTAAaggcctattattattattattattattattattattatttatgtgcTGGACTTatactttatatttttatgtaaataatGTGCTCATGTGTCTTATTATAAGGAAGTGTTGATGACGGTGGGAGAGGATGATACCGGTGTTATGTAAACCAGCTGGTGTGGTTCTATGAAATGGGAAGGTCTGACTGCAGCGGATCGGGAAGATGAAAGCAAAGAGCAGTTTGTCGATGGTACCGGGAAGTAGAGCCAGAGAGGAGTCCGATGATTTCGGGTCAGCAGGCAGACGATGAAATACTACTCCGCAAAATGTGGAGTAGTATTTCAGTCTCAGTCTCGACCTGTCAGTCTCGAAAGAAGTGTTTAAAGGAAAATGTCGAACTAGTCCTTTTTTAAGTTGAGCGTTAAGATATGTAAGGCTTTTTGGGTGATGAGAAAGTAgaaatgatgattttttttatttaaatttttttttggtgtggttTTGAAAAAGAGACGGATGTTTGTCCCGAGAAGCGAGCCACTGTATAATATGAAATACGAGGTGCTATTGATTCACAGGATCTGCCATCTTTTGTTCGCTTgaatgagtttaaaaaaaaacaacccttcTAAAGTGCAGAACTGGCAACTCTGATTGCTCTTAATCTCCAGTGAAACATTCCGCTTTTTGTTCTGAGGTGCCAAACCCGAATAAGACCacattgtgttgtttgttgttgtcacCAGCTGGTACAATGGCCTTTGTGTGGGAGATGGGCGTCTCCAGCCACGGCCATGCTGTCATACTTAGAAAAACTGGAACACCACGCTGGAAACACTTTTCATCTCAACGAGTGATTTCATCTCGCCGAGTTAGCACATTCTACTTGAGCTTGTTGtaagatgtttgtttttttgtttttcttctaaaCAGCAGGAAAGTATAGCCAGAGAAGTCCCAGCATCTGTTTTGCTACTGTATAAGGAAATAAGCTTGAATCTCAAGAGTAAAGTACGTTCCAGTCGGTCTACTCTGCTTTTTCTAATACCTCTCCAAACAGGTGGCGGTGTCTTGAAATAATCTCAAATTCAGGCTGAGATGATGGGACTTGGCTCAGTTGTACAGAAACGAGTAAAGCTTTCCTGTTGCGTCTCTGAAAAGGCGATTTTAGGACTTGACGAGCAGCGTGATCTTGAGAGCACATTGGACTTGTTTTGCAGTGCAGTGATGTCAGGGATCTCACTTTGCAGGATGACGGAACGCTCGAATGGGTCGGACAGAGTGGCTCCTGTTAGCTGGCACTGTCTGTCCGCCACTCGAATATGACTTGTGCTGTGGTGTTGATTTCGTTATTTTCATCAGCTAGTCACTCATAGCattgggtgcgtgtgtgtgtgcgtgcgtgcgtgtgtgtgtgtgtgtgttttcattgtcTGAGCAGTGCTCAGCTGGCAGTCAGGTCGTCATCCTCACAAGGTGGAGCACCACTGATGTCACCCAACATTCCTGTTAGTTCTGTGTGAGCGCAGTGAGACTGAAGGATACTGTAGGTTACAGTCAAACCAGCCACAAGCAAATAAATGTTCCAGAGATGTATGTTTATATtgcattttatattgtttttttgttttttttaatgtatgagCACACTGATTGCATCTGaaaggacaaaaaaagacataatcCTTATCTTATTCTGATCAACTGCAGGCTAATATGTAGGCAtcacaaagcaaactgaaaaaGCTCATTAAAGGTTGTAGAAAATA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG:

id description
K08804 STK17; serine/threonine kinase 17

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU164148 lncRNA upstream 65206 4448257 ~ 4448460 (+) True G122024
TU164146 lncRNA upstream 66327 4447095 ~ 4447339 (+) True G122022
TU164142 lncRNA upstream 68539 4441617 ~ 4445127 (+) True G122021
TU164163 lncRNA downstream 56808 4582819 ~ 4583029 (+) True G122034
TU164170 lncRNA downstream 110562 4636573 ~ 4636980 (+) True G122039
TU164169 lncRNA downstream 157444 4683455 ~ 4684046 (+) True G122038
TU164171 lncRNA downstream 159129 4685140 ~ 4685581 (+) True G122040
TU164172 lncRNA downstream 161595 4687606 ~ 4687953 (+) True G122041
XM_039818640.1 mRNA upstream 1342 4450254 ~ 4512324 (+) True hecw2a
XM_039818641.1 mRNA upstream 1342 4450254 ~ 4512324 (+) False hecw2a
XM_039818912.1 mRNA upstream 77315 4416853 ~ 4436351 (+) True pgap1
XM_039819163.1 mRNA upstream 97226 4409864 ~ 4416440 (+) True maip1
XM_039817040.1 mRNA upstream 114792 4394058 ~ 4398874 (+) True LOC120569241
XM_039818644.1 mRNA downstream 40528 4566539 ~ 4575421 (+) False ftcdnl1
XM_039818647.1 mRNA downstream 40593 4566604 ~ 4575421 (+) True ftcdnl1
XM_039818645.1 mRNA downstream 40593 4566604 ~ 4575421 (+) False ftcdnl1
XM_039818646.1 mRNA downstream 40593 4566604 ~ 4575421 (+) False ftcdnl1
XM_039818649.1 mRNA downstream 40593 4566604 ~ 4575421 (+) False ftcdnl1
TU163990 other upstream 403233 4108030 ~ 4110433 (+) True G121917
TU163720 other upstream 1542334 2962205 ~ 2971332 (+) False ndufv3
TU163721 other upstream 1542334 2962205 ~ 2971332 (+) False ndufv3
TU163718 other upstream 1542334 2962578 ~ 2971332 (+) False ndufv3
XR_005641062.1 other upstream 1594917 2868580 ~ 2918749 (+) False pde9a
TU164165 other downstream 192274 4718285 ~ 4720843 (+) True G122036
TU164256 other downstream 290127 4816138 ~ 4817784 (+) False zgc:136439
TU164274 other downstream 368774 4894785 ~ 4895502 (+) True G122128
TU164284 other downstream 448845 4974856 ~ 4982979 (+) True fkbp7
TU164393 other downstream 533990 5060001 ~ 5070131 (+) True LOC120569936

Expression Profile