RNA id: XM_039818651.1


Basic Information

Item Value
RNA id XM_039818651.1
length 1672
RNA type mRNA
GC content 0.41
exon number 2
gene id LOC120570350
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 28735598 ~ 28737558 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATGGAGACACAGGTCGGAGAGGAGCTCTGCTTTCCACAACTCTTCAACACATCCTGCAGGAAGCTGACGTCTCCTTTGTTTGAAGTGATGCTCATTCACATTTTgctttcctccatctctctgctcactGTAGCTCTCAACCTGCTCGTCATCATCTCAGTCTCCCACTTCAGgcacctccacacacccaccaacatcctcctcctctctctggctgtctcagacTTTCTCGTGGGCCTCCTGCTGATACCCGGAGCAATCCTGCAAAAaacatcctgctggtttcttggtGATTTTTTGTGTTCTCTGTATTCTTATCTAGAACTTATCATTATTTCTTCCTCAGTAGGTGACATGGTGCTCATATCAGTTGACCGTTATGTGGCTATTTGTGACCCTCTGCATTACACCACCAGAATCACCATGGATAGAGTTAAATtatgtgtctatctgtgttGGCTCTGTTGTGTTTCCTACAGCCTTCTCTTTACAAAGGGTTTCCCGACTCAACCAGACAGGTATATTCCGTGTTACGGAGAATGTGTGTTGGTGGTTGGCTATATTGCAGGGATTGTGGACCTTGTTTTGACCTTTATTGTTCCAGTTACTGTCATCGTAGCTCTGTATCTGAGAATATTTGtcgtggctgtgtctcaggctcgtgccatgcgctctcacattacagctgtcacactccagATTTCAGTGACTtcaaaggcaaagaaatcagagctgaaagcagccaggactcTCGGTGTTCTTGTAGTTGTGTTTCTAATTTGTTTCAGCCCATATTACTGCATTTCTCTTGCAGCTGACAACTTGCTCACGGCCTCATATGCATCCTTTATGGTcccaatgttttattttttaaactcttgtctaaaccctgtgatctatgcctttttctacccctggtttagaaaagcagttaaACTCATTGTTACTCTTCAGATATTGCAGCCTGGCTCCTCTgaggccaacatactgtagagaggctgtggagggactgagatcagACTTGGAATGAATATGTTCCTGCTGTTCAGTGagtaaattattaaatttgaattTCAATACAGAAATTGAAAGGCCTGTGCTTCAGCTTTtgctttttgtgtatttttcctctctgatgctgctgcatTTTAGGAGTCATAAGCACCATATactgtttcttttttccccaGGAACCATATTCTTTGTGATAAGAAACATGTTAACCCAAAAGAACAAAAGGGCTACTAAAGCTTTGTATTTATGTTACTATGTTTGACCAAAGCATCTTCTCTGTGATTTGCGTCCACTTTCTTGGACAGGCCTGCTGGGCTCCTGTTccacagagaaaaaagatgcCCCTGAATAGCCACACtttcatgtatttgtatgtttccACTATAGAAAAATATCAACTATTGTGTTTCAAATTAAACTGTCCACACAAAAACATCAtgttctctttcagctaagggacAAAAGCTGCTTTAATCATTTCAGTGCAGTGCCATTCATATTTGATCCCCTGTATATCTTCTCTCTATGACACACATATTGAAAGCAGTATGAAGTCCTTTTGGCAAAAAGTTTAACAACAGCTAATTTGAAAAGATAATATTTTATAGATTATCTATCCTTCAGCGGATAATTGCAGTTACATTTCCAGAGAAACATG

Function

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU171813 lncRNA upstream 22073 28712431 ~ 28713525 (+) True LOC120570261
XR_005641042.1 lncRNA upstream 22286 28712446 ~ 28713312 (+) False LOC120570261
TU171784 lncRNA upstream 201426 28533943 ~ 28534172 (+) True G127701
TU171740 lncRNA upstream 349956 28385417 ~ 28385642 (+) True G127665
TU171692 lncRNA upstream 391800 28343492 ~ 28343798 (+) True G127623
TU171844 lncRNA downstream 155105 28892663 ~ 28893022 (+) False G127747
TU171845 lncRNA downstream 155183 28892741 ~ 28895512 (+) True G127747
TU171846 lncRNA downstream 155183 28892741 ~ 28893057 (+) False G127747
TU171842 lncRNA downstream 155646 28893204 ~ 28895512 (+) False G127747
TU171861 lncRNA downstream 178414 28915972 ~ 28916196 (+) True G127762
XM_039818347.1 mRNA upstream 26716 28707542 ~ 28708882 (+) True LOC120570124
XM_039818620.1 mRNA upstream 124114 28609691 ~ 28611484 (+) True LOC120570328
XM_039818333.1 mRNA upstream 237996 28492168 ~ 28497602 (+) True LOC120570107
XM_039818332.1 mRNA upstream 247848 28484923 ~ 28487750 (+) True LOC120570105
XM_039818805.1 mRNA upstream 285648 28414638 ~ 28449950 (+) True fer1l6
XM_039818103.1 mRNA downstream 66686 28804244 ~ 28891667 (+) False raph1a
XM_039818102.1 mRNA downstream 66687 28804245 ~ 28892620 (+) True raph1a
XM_039818104.1 mRNA downstream 66687 28804245 ~ 28892620 (+) False raph1a
XM_039818105.1 mRNA downstream 66687 28804245 ~ 28892620 (+) False raph1a
XM_039818176.1 mRNA downstream 560485 29298043 ~ 29299276 (+) False LOC120569952
XR_005641067.1 other upstream 325759 28388650 ~ 28409839 (+) True prkag3b
TU171231 other upstream 2317931 26411511 ~ 26417667 (+) False mphosph8
TU171128 other upstream 2605719 26116988 ~ 26129879 (+) True G127165
TU170822 other upstream 3076872 25630107 ~ 25658726 (+) False cacnb4a
TU171918 other downstream 291344 29028902 ~ 29041224 (+) True G127814
TU172007 other downstream 558926 29296484 ~ 29299361 (+) True LOC120569952
TU172063 other downstream 721586 29459144 ~ 29459978 (+) True G127932
TU172070 other downstream 730568 29468126 ~ 29474550 (+) False G127935
TU172092 other downstream 738554 29476112 ~ 29478950 (+) True G127938

Expression Profile