RNA id: XM_039818724.1


Basic Information

Item Value
RNA id XM_039818724.1
length 3666
RNA type mRNA
GC content 0.55
exon number 9
gene id LOC120570402
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 13177337 ~ 13270891 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgagagcGTGACCTCACCGCTTTCTGCACAGCTGctggagagaggggggagacacacagagaaaaagcgAGCAACAGAAACAcgttgagagagacagagagagagaggtacagGGGAGAACATTCACAACACCGGGGTAGCTACGCTGAGCGCGCGGGGGACTCTGTCGCGGGTCGTCCGTTGGCCGCTTCCCGCTGGTCCGCCTCCCAGAATGTTCTGTGCCCCCGGTTCATTTCTACGGTACACGAACCAGTCGCCGCGGCTTCCCCACGGACACTGAAGCCCAGATGCTCACCCTCTCCGCCGACATGGACGAGTCTTCGTCTCTGCTGGATCTACTGGAGTGCTCGGTGTGCCTGGAGCGCCTGGACACCACGGCCAAGGTGCTGCCGTGCCAGCATACCTTCTGCCGCCGCTGCCTGGAAAACATTGTCAGCTCCCGGAACGAGCTCCGCTGCCCGGAGTGCCGTATCCTGGTGGACTGCGGGGTGGACGACCTGCCGGCTAACATCCTTCTGGTTCGCCTCCTGGACGGCATTAAGCAGCGGCCCCAGCGAGGGAGCGGAGGAGGAGTAGGCGGCAGGCAGTCCCTGGCCGGGGGCTCGCTGCAGGGCTACGCAGCCGGGATATCCGCTTCTCCCCCGGGCAGTGCGATCAGAGAGCTGCCCGTAGCCGTCAGGAGCTCCCCTGTGAAGaaTATCCCAGCGCTGCCTTGCGGTAAAGCCCTCTACTCCTACGAAGGAAAAGAACCTGGCGATCTCCAATTTTCCAAGGGTGACATCATCATCCTGCGACGCAAAGTGGATGACAACTGGTACCACGGCGAGCTCAACGGTTGCCATGGTTTCTTGCCTGCTAGTTACATCCAGTTGCTGCGTCCCCTGAGCCAAACTCCGCCCCAGGGCAAAGCACTGTACGACTTTGAGGTCAAAGATAAGGACCAGGATAAAGACTGTCTGGCATTCAgcaagTTAAATGAAACAGCCAAGCAGCTGATGGAGATCGACAAGCCCACGCCAACTAATGTTCCAGGTCCGAGCTCCGAGCCAACCCCGTTGGGCCCCTGCTCTCCTGGTCCCTCCCCCAGCGCTTCCCCGTCCAATGGAAATGGCTCTGGTCATAGAAGAGGCGAAGGGAAGAAAAACGCCAAGAAGAGGCATTCATTCTCTGCACTGTCTGTCAGCCAGAGGGCCGCCCAGCTCAACAACAGGCACAGTATGGAGATCTCCCACCCGGTCCTCATCAGCTCCTCTGACCCCAGAGCTGCTGCACGCatccagGATGCATCTCACCCGGGTCCCTCTCCTTCCTCGGCAGGGGTTCTGGTTCCCCCCAAAGTGGCATCCATTACCTCTGAGCTGTTGGCCCATGCCAAGGTGCAGCTGCCACTCAACATATATCTGGCTTTATACGCCTACAAGCCCCAGAAGGCTGATGAACTTGAACTTAGGAAAGGGGAGATGTATCGGGTGACAGAGAAGTGTCAAGACGGGTGGTTCAAAGGCACCTCGCTGAGAACTGCTGCCTCTGGTGTCTTCCCAGGAAACTACGTCACTCCTGTGTCCAGGGCCCCGTTTGGAGTTGGTGCTTCTCGGGGCTCGTCTTTGTCCAGTCCAgtaggtggaggaggaggaagtgggTGTAGTAAAATCTCTGCCCCTTCGTCTCCAGGGTCCCCAGGGTCCCCGGGGCCCTCTTCGTCCCGTCCCTCCACCCCACTAGCAAACTCTGTTAACGCTGCAAATCCCGCCTCCTCTCCGCAAACTGCCGCCGCCCAGCTGAAGAACTGCCTGCGCTCCAATCAGCATACGGTTAACCAGGCACGCACCTCAATGCAGCTGGtCCACAGTCCTCCTGCTGGAAGCCCAGAGCGCTCCACAGTGGCCCTCTCCCCGCTGCGTCCTCAGAGTTCCTCCCCCTCACGCTGCCCTGGCCAATCGGGTCGTCCTCTCTCCATGGTGTCTCCAGGACCGAGCTTAGGGCCCTCACCCCTCTCATCCCCTGCCTCGAGGCCccttctccccctctcctcccctctctcctgccTCACGCCTCCCAACGTGTCAGCGGTGCTTCTCAACGGGGACCTAACTAGTCCCTTGCAGCCATCATCGTCGGGCCCCTCCCACAGCCCCACCCAAGGCGTCCTCGCACCCAAAGAGAAGAAGGAGAGGAAAGCAGGAGGTTTATTAAAGCTCTTGTCGGGTGCGGCAGCCAAAAAGAAACCTCGCTCGCCTCCCTCGTCCCCGCCCACCCACGACCCCTCGCTATCTGGCCACGGCGCCGTGGCCACCGACCCTGCCCACCATCctcaccaccatcaccaccacgcCCGCTCAGGTTCCTGTCCGATGGCGTCGCAGGGGCGAGCCGGCTCCTGTCCGATCGAGAGTGAGATGGCGGGGGCCATTGGACTGGAGCCTCTGCACAGGAAGTCCGGTTCCCTGGATACCAACTTCCCCCTGTCGCCCCCCGCGACGCGCGCTAGCAACGCTCTGATGGTCCTCCGGCCTGAACCCAAACCCCTGTCCAGAGAGagGTATCGTGTGGTGGTGCCCTACCCGCCCCAGAGCGAGGCCGAGATCGAGCTGCGGGAAGGCGACGTAGTGTTTGTGCACAAGAAGAGGGAGGACGGCTGGTACAAAGGCACCCTGCAGAGGACGGGACAGACCGGCCTATTTCCCAGCAGCTTCGTCGAGAGCTTCTGAAATGGAAGAAGTGgacaaaagaacaaaacacTGTTCCTGTTTTTGagttacaaaacacacacacacacacacacaaacacacacacacaagctttaCAGCTACATACATATGAAGAATGGACTGAAATTGGTTTCTAAGAATTATACTTTTGGATTGAAGACGGACATTGCAAAAAGAAAGCTGCTTTGATGATAGTCAGAATGCTTTCTCTAGAAGTGGAATCTGTCAAGAAACATCGATTTAATGAAATTAAAACTTAATAAATTCTGGCACAAAACATCAATAATAGTAAATGTCTTCAGAAACCCATATCAGTCCAactaattcacacacacacacacacacacacacacacacacacatagaggaAAGCTAGCCCCCACTTTGACCAGCCACACAGGAATCAGGGCAACGGTTGGATCAGACAATCGGTTGTCTGGACCCGTGATGTTGACTACTGAAGGCACACAGACTCAAAGAACACAGAAGGACAAACCCTGCCTCCCAGTTCTCCTCCTCGGCACCATCCACCAGCAAACCCTAGCACAAAAAGCATTAACTTTGCTTTCCTCTGAGACCTCAGAACTTAAATTCGGGTGCTTTCCTCGTTTGAAAAGTGCAGATTTATCGCCAGGTGATGAGGGAAGTGTGTGTCCAGTCCAGGAtcattgtaaacacatctccgTGTCTAGTTTGTGACAACAAGCACATATGTTTCATACCAACCCAATATATGTTTATAACAGTGCATGTAGCATTATTATGTTTTTCTATATATGTTGAAATAGACGTTTGTGTTGTCCCAAACTAGTCATGCTGTGATGATCTGTCACAAAACTAAAGGTGCAAAAAGTAAAACACAACTAAGGTTAATTATTCTTCTATTTATACATCTTACATACATTTATACAGCCATTTGTTTTATTAGAATTTGTCCTTTATagaccacccccccc

Function

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166126 lncRNA upstream 315514 12861554 ~ 12861823 (+) True G123505
TU166112 lncRNA upstream 499925 12677109 ~ 12677412 (+) True G123494
TU166111 lncRNA upstream 501211 12675926 ~ 12676126 (+) True G123493
TU166109 lncRNA upstream 512866 12664001 ~ 12664471 (+) True G123491
TU166093 lncRNA upstream 573730 12603396 ~ 12603607 (+) True G123479
TU166271 lncRNA downstream 101457 13372348 ~ 13377140 (+) True G123634
TU166366 lncRNA downstream 443319 13714210 ~ 13715962 (+) True G123714
TU166373 lncRNA downstream 498788 13769679 ~ 13769942 (+) True G123721
TU166380 lncRNA downstream 623389 13894280 ~ 13896128 (+) True G123725
TU166386 lncRNA downstream 890791 14161682 ~ 14162642 (+) True G123731
XM_039818979.1 mRNA upstream 55687 13105229 ~ 13121650 (+) True LOC120570582
XM_039818980.1 mRNA upstream 55687 13105229 ~ 13121650 (+) False LOC120570582
XM_039817132.1 mRNA upstream 97582 13076738 ~ 13079755 (+) True vgll3
XM_039818492.1 mRNA upstream 128693 13037824 ~ 13048644 (+) True pou1f1
XM_039818452.1 mRNA upstream 229791 12936975 ~ 12947546 (+) False zgc:152951
XM_039817385.1 mRNA downstream 17448 13288339 ~ 13293576 (+) True sowahca
XM_039817388.1 mRNA downstream 25367 13296258 ~ 13303665 (+) True akap17a
XM_039817387.1 mRNA downstream 25368 13296259 ~ 13303665 (+) False akap17a
XM_039817389.1 mRNA downstream 33957 13304848 ~ 13324568 (+) True asmt
XM_039818494.1 mRNA downstream 157887 13428778 ~ 13437457 (+) False znf148
TU165581 other upstream 2558641 10607484 ~ 10618696 (+) False lrp1bb
TU165424 other upstream 3248446 9926817 ~ 9928891 (+) False umps
TU165423 other upstream 3252497 9920711 ~ 9924840 (+) False umps
TU165208 other upstream 4380591 8795453 ~ 8796746 (+) True G122846
TU164880 other upstream 6028298 7146625 ~ 7149039 (+) True G122588
TU166270 other downstream 82415 13353306 ~ 13354085 (+) True G123633
TU166312 other downstream 364695 13635586 ~ 13677346 (+) False cps1
TU166397 other downstream 962441 14233332 ~ 14234070 (+) True G123742
XR_005640926.1 other downstream 1867586 15138477 ~ 15155886 (+) False trpm2
TU167128 other downstream 2828380 16099271 ~ 16101611 (+) False dap1b

Expression Profile