RNA id: XM_039818745.1


Basic Information

Item Value
RNA id XM_039818745.1
length 1575
RNA type mRNA
GC content 0.48
exon number 11
gene id LOC120570413
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 12253104 ~ 12261257 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TAAAGTTATTTATTTCGCGCCGTTGTATCATTGCCAGCGGGCACACAGCTGGCTCGACTTTTACAGATGACATTTGCTGCATATCGATATTAACGTTACTAAGTTAATTATTGTCAATTCAGCGGCGATGGTAATGGTTAGGAAAGCCTCCAGAAATGCTGGgatctacacacagacacacaaatccCGCAAGAGGACTCATCATCGGCCCCGTCCAACCAGAACCATCATGACCCGCAGCCAGTGTAACACCAGCGGTAGCTTCTTCTACAGGCTCCCGTCAGAGGTGTTTGACATGATCCTGGATAAACTATCTGagGTGGAGATCAGTGTGTTCAGCATGGTGTCCAAGGAAATCACTAGATACATTATGAACTACATCTCCACACTGGCCTGGAAGAATAAAACGATCATTCAAAGCTTTCACCACTCCACCTGCCTTGAACAGAGATCCATTATCGGACATTACAGAGACCTGGGTTTGTTATTCAAGAGATGTACCCTGTTGCTACCAACAAAGGACAGGTTAAAGTTTATCTTTAGCAAGTTTTCACAGATTCCATGCTTCCTGTTGGAGCAGTGTTTGGCACCAGACTGCATTGGCTTCTCCAGCTACGGAGTCTTCCTCCAGACACTGATCGCAGGTTGGGATGAGCTGGAGTGCCACAGAGTCTTCAACTTCCTTTGTGACTTCGCAAATCTGCTGCAAAAAATGGAGGCAGTCATTACTGGAAAACCAGGGGTGAGGTGGTACCAAAAGCTGCAACTCCGTCTATTCTGCCGTCAGGTTCTGTTGGACCCATGGCCCAACCAGTCGGAATGTCAGTTCTGGCTAATGCAACTCCTGAAACCTTGGCCCATGGTCAGCCAGGCACACTTACTGTTCATCCTCTATGGACCTCTGCTGCCTGAGGGCTCCCTCGGTTGGCAGGATCTGGTGGAGAGGGGCCTGCCTCACAGCGCTCTGTGGGACCTGGCCAGGGCCATCCTTCTGCTTTTCAGCAAACTAGAAGTCCAAGGCCAGTGCACCAATTCGCTGCTGTCAATCTTGGAGGAGCTCATTGTCATTCCTCAGCCGTGGCATGTGGAGAATGTGGCTCGTCTGTTGGTGCTGTGTGGCAGCAGTCTCTGCTACACTGTTCTAGTCAGCAAGGCTGTCAATAGACGACTTCTTGAGACCTCCAGACTCATTGTGTACATCATACTGGTGTGTGAGAAAGACGGCTATCACATGTCCTGGGCAGTGAAAATGGTGCAGCAGATCTGCAATGTCTTCACCACGGCTCCTGAAAGGTTCGGCTTCATCCAACAACTGGAGAACATGTTTTCCGAAGTCACCAGGGAGttttttgagttttctgttgcagGGAACCATCTTGACGACAGGGAGACTTTCCAGACCCTGTGTATCCTCCTGGACTCCAGTGCTCGCTTCCACACTAAATTCCTCCACATGTTCCTCAAATAGGAATGATGCAGATTAAAAGTGACAATGGagagaaggaagaaaagaaaagaaagaaagaaagaaagaaaaaaaacgtaaaTAATGAAGGGGGTTAACGATAAACAGAT

Function

GO: NA

KEGG:

id description
K10321 FBXO47; F-box protein 47

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166040 lncRNA upstream 16813 12232683 ~ 12236291 (+) True G123439
TU165972 lncRNA upstream 39882 12114047 ~ 12213222 (+) True G123384
TU165977 lncRNA upstream 75092 12118381 ~ 12178012 (+) False G123386
TU165974 lncRNA upstream 112781 12118381 ~ 12140323 (+) True G123386
TU165975 lncRNA upstream 121652 12118381 ~ 12131452 (+) False G123386
TU166058 lncRNA downstream 510 12261767 ~ 12264331 (+) True G123453
TU166059 lncRNA downstream 2139 12263396 ~ 12264331 (+) False G123453
XR_005640888.1 lncRNA downstream 152295 12413552 ~ 12415344 (+) True LOC120569536
TU166093 lncRNA downstream 342139 12603396 ~ 12603607 (+) True G123479
TU166109 lncRNA downstream 402744 12664001 ~ 12664471 (+) True G123491
XM_039817935.1 mRNA upstream 67498 12184466 ~ 12185606 (+) True tmem223
XM_039819133.1 mRNA upstream 139841 12060670 ~ 12113263 (+) True LOC120570655
XM_039817233.1 mRNA upstream 240367 12007657 ~ 12012737 (+) False serp2
XM_039817830.1 mRNA upstream 272268 11949115 ~ 11980836 (+) False LOC120569768
XM_039817398.1 mRNA downstream 364717 12625974 ~ 12632469 (+) True stx19
XM_039818451.1 mRNA downstream 675718 12936975 ~ 12947546 (+) True zgc:152951
XM_039818452.1 mRNA downstream 675718 12936975 ~ 12947546 (+) False zgc:152951
XM_039818492.1 mRNA downstream 776567 13037824 ~ 13048644 (+) True pou1f1
XM_039817132.1 mRNA downstream 815481 13076738 ~ 13079755 (+) True vgll3
TU165581 other upstream 1634408 10607484 ~ 10618696 (+) False lrp1bb
TU165424 other upstream 2324213 9926817 ~ 9928891 (+) False umps
TU165423 other upstream 2328264 9920711 ~ 9924840 (+) False umps
TU165208 other upstream 3456358 8795453 ~ 8796746 (+) True G122846
TU164880 other upstream 5104065 7146625 ~ 7149039 (+) True G122588
TU166170 other downstream 788501 13049758 ~ 13279866 (+) True G123539
TU166270 other downstream 1092049 13353306 ~ 13354085 (+) True G123633
TU166312 other downstream 1374329 13635586 ~ 13677346 (+) False cps1
TU166397 other downstream 1972075 14233332 ~ 14234070 (+) True G123742
XR_005640926.1 other downstream 2877220 15138477 ~ 15155886 (+) False trpm2

Expression Profile