RNA id: XM_039818760.1


Basic Information

Item Value
RNA id XM_039818760.1
length 2830
RNA type mRNA
GC content 0.47
exon number 4
gene id gjc4b
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 8121607 ~ 8130460 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GGGAATATTCTTTGTCCTCACCCCGCAGTAGGCTACGGCACACAACTGGAGGAAGACGCAGGCTCCCCACAGGAaagaagaagtaaaaaaaaactggatggCTTGATATTATAACGGGAGggctttattttaataaagggAAAACAAGCTCTTGAAATAAGCGACAACTTCGAGGAGCCGTCGGGCGAAAGCAGAGAACCCCAAATCACAACTGAAGGTTTGAGAGCCTCCCTTCTACTGCTGAGGCAAAATGAGCTGGAGTTTCCTCACGCGCCTGTTGGACGAGATTTCCAACCACTCAACCTTCGTGGGCAAAATCTGGCTCACCCTCCTCATCGTCTTTCGCATCGTGCTGACTGCCGTCGGGGGCGAGTCAATCTACTACGATGAACAGAGTAAATTTGTGTGTAACACGCAGCAACCCGGTTGCGAGAACGTGTGCTACGATGCGTTTGCGCCGCTGTCACACATTCGCTTCTGGGTGTTTCAGGTGATCATGATCACCACCCCCACCATCATGTACCTTGGCTTTGCTATGCACAAGATTGCCCGCATGGAGGACGATGACTACCGGCCGCGGGGCCGGAAGAGGATGCCGATAGTGAGCCGCGGTGCCAACCGGGACTACGAGGAAGCGGAGGATAACGGGGAGGAGGACCCCATGATCCTGGAGGAGATTGAGCcggaaaaggaaaaggaagtCGCGGAGAAGCAGCAAAAGCACGACGGGCGCCGCCGCATCAAGCGCGACGGCCTGATGAAGGTCTACGTGTTTCAGCTGCTGTCGCGTGCCATCTTTGAGGCCTCGTTCCTGTTTGGACAGTACGTCCTTTATGGGCTGGAGGTGGTCCCGTCGTACGTATGCACGCGCTCCCCTTGCCCGCACACGGTGGATTGCTTCGTCTCGCGCCCCACAGAGAAAACCATCTTCCTGCTCATTATGTACGCCGTCAGCGCCCTGTGTCTGCTCTTCACCATGTTGGAGATCCTTCACCTCGGCATCAGCGGTATCCGAGACTGCTTTTGCGCACCGCGGCCTCAGCCGCCCACCCCCCGTCACCCGGCTCTGTCCAGCCAGAGGTCCTCCATCTGCCGCCAGCCATCTGCGCCTCCAGGCTACCACACGGCTCTGAAGAAGGACCCGTCGGGGAAAATGGGCTTCAGGGACAACCTGGGAGACTCGGGCCGCGAGTCGTTTGGCGACGAGGCTTCGTCGCGGGAGCTGGAGAGGCTGCGACGACACCTGAAACTGGCTCAGCAGCATCTGGACCTGGCTTACCAAAATGAGGAGAGCAGCCCGTCGCGCAGCAGCAGCCCAGAGTCCAACGGAACCGCGGTTGAGCAGAATAGATTAAACTTTGCCCAGGAGAAGCAGAGCAGTACATGTGAGAAAGGTCTTCGTGCGTAGGTTCTCATAAGACCAGCTGACACAAGACTAAAATTTACATCGGTGACATAAGGgaatccaagtgtgtgtgtttgtgtgtgtgtgacatgacCTTGCTTGAGGTGGATGAAGTCAGCCCAAGCCTTCCTGCATTACGGCCAGTTGTGGTGGGACAAAGAGGAGAGCGGTCGTCTCAACCAGCAATACTTGAGACGCCTGTCTGAAGATCCAAAGTGCTTACAAACTACCGTTGTGCGGCAAGAACGGTTAAGCTTATCATGTACTTCTCCCTCAGGGCAGCTAataactgtaatttttttttttttctttccatgtgtgtgtgtatatatatatttttttattacggGAGAATTTGTCCTCTTTTGGAAGTTCACAGTGAATACATCTCAAGTTTGCCTTAGATCTAAACTCTGTTTTATGGCATTTTGTAAAGGTATGGCCAAGCCAGTTGTAGTGCAAAGAACATGTTTACACCGtagaaaattacttttgtgaGGAAGTGGATCTCAGGAGTGAGATGCAAAACAAAGGTTAATGGACAAGGCACCACTCAAAACGGTACTGGAGTTATTGTCATGCTGATGAAGACATTTTGAGTTAATTTTCATACAAAGGTTTCTCTCAAGTGTGTcactatttgttttgttttttataaatggtTTTTGACAATGTTGGCACTGCACCGGTCAACATTCCCAAGCCTGGTGCTTCGATGGTAACTGGAACACACTTGGGGTGCCTCTGTCCAAAGGAATAAACAAACCTGGGTAATGCTTGAAAAACATAACTTTTGATATTGTCTTGTATCGTTTAAACATGTATTTGATACTGctctttatttttgtattagtgAGTATTGTTGTACTGAAAAGAGGCTACTGTCACTGTGGCAGACATGATTTAATTTTAAAACCACATTCTCGGTCTGCTGTCTTAGTTCCCTGATGCCTGTCCGTGGACGTGCATTCTTTTAGTTCAACTGTTTTCGGTTTCTTTTTTCAGTaagtttcaacaaaaaaaaatcaataacctGCAACTTAGTATTTACACATCGTCTCAGACCAGCAAACATTCCCTTTTTCCGTACAGATCTGGATTTAATTGTATCGTTTGCTAAAATAAGGGAAAATACTGTTTGTGTTCCATgtcgtgatttttttttttgttgggatTATCGATGTTCCAGAATCTCATTGAGGGTTGTAAAACAACATAATCATTTCAATGTAAATTCAATGCCTTGAACGCGCTGTGCGATGCCATCTTTTGTATGCTGAATCATACCCACAGTGCCACATTAGTGCCAACTCAAATATTGTCATCTCAAGTTCTTTTTGGAACAAtgctttttgtactttttatactttttgtaTTGATAGTTATTTGTGgttagtttttaaaataaattttccAACAAAAACA

Function

GO:

id name namespace
GO:0007154 cell communication biological_process
GO:0005922 connexin complex cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU165050 lncRNA upstream 63651 8057042 ~ 8057956 (+) True G122723
TU164988 lncRNA upstream 208276 7828968 ~ 7913331 (+) True G122668
XR_005640865.1 lncRNA upstream 272893 7843015 ~ 7848714 (+) True LOC120569330
XR_005640864.1 lncRNA upstream 363321 7706494 ~ 7758286 (+) True LOC120569329
TU164977 lncRNA upstream 497539 7623417 ~ 7624068 (+) True G122659
TU165084 lncRNA downstream 184733 8315193 ~ 8316693 (+) False hdac4
TU165113 lncRNA downstream 278319 8408779 ~ 8414296 (+) True G122779
TU165122 lncRNA downstream 331047 8461507 ~ 8465691 (+) True G122787
TU165209 lncRNA downstream 662987 8793447 ~ 8871109 (+) True G122847
XR_005641031.1 lncRNA downstream 861222 8991682 ~ 8992991 (+) True LOC120570217
XM_039817705.1 mRNA upstream 44004 8070678 ~ 8077603 (+) True parp9
XM_039817704.1 mRNA upstream 44004 8070767 ~ 8077603 (+) False parp9
XM_039817703.1 mRNA upstream 44004 8070767 ~ 8077603 (+) False parp9
XM_039817836.1 mRNA upstream 195086 7893880 ~ 7926521 (+) False slc39a10
XM_039817838.1 mRNA upstream 195086 7894095 ~ 7926521 (+) False slc39a10
XM_039817948.1 mRNA downstream 40240 8170700 ~ 8315898 (+) True hdac4
XM_039817949.1 mRNA downstream 40240 8170700 ~ 8315898 (+) False hdac4
XM_039817950.1 mRNA downstream 40240 8170700 ~ 8315898 (+) False hdac4
XM_039817952.1 mRNA downstream 40240 8170700 ~ 8315898 (+) False hdac4
XM_039817951.1 mRNA downstream 40240 8170700 ~ 8315898 (+) False hdac4
TU164880 other upstream 972568 7146625 ~ 7149039 (+) True G122588
TU164440 other upstream 2909759 5209133 ~ 5211848 (+) False ybey
TU164412 other upstream 2955709 5164233 ~ 5165898 (+) True G122226
TU164393 other upstream 3051476 5060001 ~ 5070131 (+) True LOC120569936
TU165208 other downstream 664993 8795453 ~ 8796746 (+) True G122846
TU165423 other downstream 1790251 9920711 ~ 9924840 (+) False umps
TU165424 other downstream 1796357 9926817 ~ 9928891 (+) False umps
TU165581 other downstream 2477024 10607484 ~ 10618696 (+) False lrp1bb
TU166170 other downstream 4919298 13049758 ~ 13279866 (+) True G123539

Expression Profile