RNA id: XM_039818768.1


Basic Information

Item Value
RNA id XM_039818768.1
length 1793
RNA type mRNA
GC content 0.49
exon number 14
gene id cbsb
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20589788 ~ 20611661 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ATTTTGCACTTGTATTTCAGCCTtgtcatatttatgtttaatattGTTGTACTTTCTTTACATTTAACGTATTATTGTGAAGCTAACATTGTGGGCCCGTCTAGTTGGTGAAACGTGCTTGAGAGACTGTGAAATGACTGGCGGAATTGCATTTGacttattgtattttatgtgtttatttttcttttagttttcacGGTGTCTTACGATGAAACGtggaaataaatgaacaaaggaCATCTGTATGATGCGTGGCCTTACTCCATTGGACCAGTGTATTTACAGTGAAAACGTAACGCCAGCATGGCCAAGAGTCTAAATGGCCAAGTGCGAGTTCTTCAATGCAGGAGGCAGCGTGAAAGACAGGATCGGCCTGCGGATGGTGGAAGATGCTGAGAAAACCGGGATCCTCAAACCAGGAGACACAATCATTGAGCCCACCTCTGGCAACACAGGTATCGGCCTCGCCCTGGCAGCTGCAGTTAAAGGCTACCGCTGCATTATAACCATGCCTGAGAGGATGAGCAACGAGAAGgttGATGTGTTGAGAGCTCTCGGGGGAGAAATTGTGCGCACGCCTTCTTCTGCAGCTTTTGATTCACCAGAGTCTCACATAGTCACGGCTTGGCGTCTAAAGAGGGAGATCCCCAACTCGCACATCCTCGACCAATATCGTAATGCCAGCAACCCTCTGGCTCACTACGATACCACAGCTGAGGAGATACTGGAGCAGTGTGATGGTAAATTGGACATGTTGGTGGCGGGAGCCGGCACAGGCGGTACACTTACTGGTGTTGCTCGGAAGTTGAAGGAGAGATGCCCCAATGTCAAGaTAGTCGCTGTGGACCCTGAGGGCTCCATTCTGGGTGGCTCTAATGAAAATAAGACTTCCTTTGAAGTGGAGGGCATTGGACATGACTTTATCCCCACAGTGTTGGACagatctCTTGTTGACATGTGGTATAAATCGACTGACCTGGAGACATTCACAATGTCACGCAAGCTGGTCAGAGAGGAGGGTCTCCTGTGCGGCGGCAGCTCTGGCTCAGCCATGGCAGCAGCAGTAAAGATGGCTCGGCAGCTTGAGGCGGGACAGCGCTGTGTGGTCATCCTGGCTGACTCCGTCCGCAACTATATGTCAAAATTCCTGAGTGACAAGTGGATGTGTGAGAAGGGGTTCCTCAGCCCGGAGGagccgatggacttcaaacccTGGTGGTGGAACATGACTGTCCAGTATCTAAACCTATGCCCCCTCACTGTGTTAGCGTCTGTGTCCTGCCAGAAAACCATCGACATCCTGAAAGAGAAAGCATTTGACCAGGCCCCAGTCGTCGATAACTCAGGTGTGATCCAGGGGATGGTCACTCTGGGAACCATCCTGTCCTCTGTGTCGGCAGGGAAGGCCAAACCCTCAGATGCTATCAGCAAGGTGCTCTGCAAGCGTTACAAACAGGTGCACCTGACAGACAACCTGGGGAAGCTGTCCCAAATCCTCGAAACAGACCACTTCGTCCTGGTGGTGCATGATCACGTTCAGaATAAAGCTGATGGGTCAACTTGTCAGAAGCAGATGGTGTTTGGCATCGTGACAGCGATTGACCTCCTCAACTACATCACCACAGATGACAGCCAGGATCACTCGTAGTCTCCGTGATCACTTCCTGTTTAAGACGTGGGCGATACTGCTTGCTTGCGACTGAATCATATTTTAATTCAGTGGTTTTTGcagctacatacagtacaggccaaaagtttggacacaccttctcattcaatgcgtttcctttatt

Function

GO: NA

KEGG:

id description
K01697 CBS; cystathionine beta-synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169011 lncRNA downstream 4856 20584648 ~ 20584932 (-) True G125658
TU169009 lncRNA downstream 4856 20584696 ~ 20584932 (-) False G125658
TU168926 lncRNA downstream 259073 20330508 ~ 20330715 (-) True G125605
TU168871 lncRNA downstream 357728 20230085 ~ 20232060 (-) True G125551
TU168860 lncRNA downstream 440609 20147416 ~ 20149179 (-) True G125543
TU169059 lncRNA upstream 55385 20667046 ~ 20667405 (-) True G125694
TU169070 lncRNA upstream 72234 20683895 ~ 20684410 (-) True G125701
TU169072 lncRNA upstream 75035 20686696 ~ 20686913 (-) True G125703
TU169078 lncRNA upstream 80236 20691897 ~ 20697240 (-) True G125708
TU169091 lncRNA upstream 99204 20710865 ~ 20713149 (-) True G125720
XM_039817241.1 mRNA downstream 74585 20499453 ~ 20515203 (-) False ankrd10b
XM_039817240.1 mRNA downstream 74589 20499453 ~ 20515199 (-) True ankrd10b
XM_039817242.1 mRNA downstream 90917 20492166 ~ 20498871 (-) True ube2al
XM_039817125.1 mRNA downstream 113439 20471607 ~ 20476349 (-) True rab20
XM_039817124.1 mRNA downstream 200386 20341286 ~ 20389402 (-) True col4a1
XM_039819157.1 mRNA upstream 18429 20630090 ~ 20636605 (-) True u2af1
XM_039817757.1 mRNA upstream 37607 20649268 ~ 20664884 (-) True LOC120569729
XM_039817119.1 mRNA upstream 103925 20715586 ~ 20719763 (-) True LOC120569295
XM_039818276.1 mRNA upstream 122889 20734550 ~ 20738320 (-) True LOC120570047
XM_039818778.1 mRNA upstream 163417 20775078 ~ 20792247 (-) False srpx
TU168946 other downstream 122603 20464109 ~ 20467185 (-) True G125620
TU168944 other downstream 128159 20459162 ~ 20461629 (-) True G125619
TU168785 other downstream 666094 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168717 other downstream 793750 19790531 ~ 19796038 (-) False LOC120570223
XR_005640980.1 other downstream 821202 19753043 ~ 19768586 (-) False si:ch211-214p13.3
XR_005641101.1 other upstream 252124 20863785 ~ 20863953 (-) True LOC120570677
TU169256 other upstream 346662 20958323 ~ 20960064 (-) False G125842
TU169333 other upstream 581247 21192908 ~ 21198041 (-) True ecrg4a
XR_005640943.1 other upstream 843905 21455566 ~ 21461127 (-) False cracdla
TU169712 other upstream 1620424 22232085 ~ 22234857 (-) False LOC120569718

Expression Profile