RNA id: XM_039818771.1


Basic Information

Item Value
RNA id XM_039818771.1
length 5089
RNA type mRNA
GC content 0.47
exon number 31
gene id LOC120570426
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18611360 ~ 18651667 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTGTGCGTCCTGTAGTAATCCTGTCCTCAGTGTCTGTACAGTAGGTGTGATATTGACAGACATTGGACTTTACAGCAGCTTTACTCTCAGAGTTTTCCTCCGTTGAGTCTTTTGTCGATAGCCCCCTGCCACATAGACTGCAGAGAAAGTCCTCAGGTTGCTTTTACtgttaggggtggggggggggggcatggaACCACTGTGGAAGGAGGCGAAGGATAATCCGTCGGCTTCAGCTAATCTTCTCTCCAAGATTTTCTTCTGTTGGCTGAATCCCTTGTTCAGTATCGGGTACAAGAGGAAGTTGGAGGAAGATGACATGTATAAAGTTCTCCCAGAAGATGCATCAGATAGACTCGGAGAGGAGCTACAATGGTACTGGAACAGAGAGGTTCAACAGGCGGCAAAAGATCTGTGCCCACCCAGACTTGCCAAAGTTCTTGTTCAGTGCTATTGGAGATCATATGCACTCATTGGAATATACATCTTTATAGAGGAAGTTATCAAAGTCATTCAGCCGTTGCTACTTGGGAAGATAATTGAGTACTTTGAGAGTTATGACCCCACCAACACAGCTGCAGTCTATGAGGCCTACAGCTATGCTGCAGGCTTCTCCTTGTTAACCATCGTTCTGGCTGTCCTTCATCATCTCTATTTCTACCACGTCCAGCGGGCAGGCATGAAGATTCGTGTGGCCATGTGCCACATGATTTATCAGAAGGCTCTTTGTCTTAACAGCAAAGCATTTGCCAAAACTACCACAGGACAAATTGTGAACCTCTTATCCAATGATGTCAACAAATTTGATGAGGTAACCTTATATTTGCACTTTTTGTGGATTGGTCCTCTACAAGCAGCAACTGtaatatttttgttgatgtatGCGATTGGCCCATCATGCCTTGCGGGAATGGCTGTCTTCTTCATCCTGATGCCAGTACAGACTATGTTTGGACAGTTGTTCTCTAGTCTCAGGGCTGAAACAACAGTCTTAACAGATGACAGGATACGCACAATGAATGAAGTAATTTCTgggatccgcgttataaagatgTATGGGTGGGAAAAGCCTTTTGCTGCATTGGTGGATGAGGTCAGAAGAATGGAAATCTCCAAGATCATGAAAAGCTCCTTCCTGCGTGGCCTGAACATGGCATCTTTCTTTGTGGCCAACAAGATCATTGTCTTCATCACCGTCTGTGTCTACGTGCTGACAGGAAACCAGTTGTCTGCTAGCAGAGTGTTTATGGCTGTTTCCCTCTATGGGGCGGTCAGACTCACCATCACACTCTTCTTTCCCTTTGCCATAGAGAAGGTCTCTGAGTCTCTCATCAGCATTAGAAGGATTCAAAATTTTCTTTTGCTGGATGAAGTTGCTCCTCAGCATTTGGGGCTTCCTGTGGCAGAGAAGAAAGATTGTATGGTGAAAATTCAGGATTTAATATGCTACTGGGATAAGATGCTAGAGGCTCCAACTTTACAGAACGTGTCTTTTACAGTGAGGCCTGAGCAGCTCCTGGCAGTAATCGGACCTGTTGGGGCTGGAAAGTCCTCGCTCCTCAGTGCCATCCTGGGAGAACTGAGTCAGGAAAGTGGTGTGGTCAAGGTCAAAGGAGAGCTGACATATACTTCTCAGCTGCCTTGGATTTTACCTGGTACGATTCGGAGCAACATCCTTTTTGGCAAAGAGCTCAACCCCCAGAAGTATGATAGAGTTCTGAGAGCCTGCGCCCTCAAGAGAGACATGGACCTATTGCCAGGTGGTGACTTGGCGATAGTTGGGGACAGAGGGGCCAACCTCAGTGGAGGACAGAAGGCAAGAGTCAGCTTAGCAAGAGCAGTGTATCAGGATGCAGATATCTACTTGCTGGATGACCCTCTCAGTGCTGTGGATGCCAAGGTGGGAAGGCACCTCTTTGAAGAGTGCATTTGTGGACTTTTGAGGAAGAAGCCTCGTATCCTGGTTACTCATCAAATCCAGTATCTGAAGGCTGCAGATCAAATTGTTGTCTTAaatcagGGTAAGATGATGGCACGGGGGACCTACAATGAGTTGCAGAGCTCTGGACTCGACTTCACCACCCTGTttaagaaggaggaggaggaggaggacggccAGGAGGGGGAGAAGCAGGGCGCGACCCCCATCCCTTGGACTGTGTCCCGCTTCCCCCATACAGTCTCTGACAACTCAATATCCTCTATGTCCTCTCTCTCCGCCTCTCTGTACTCTTTGACTGATGGAGCAGAGCCACTTACAGTGGCAGTGCAACCAACGGAGGAGGAAAGCCGCTCAGAAGGAAACGTCGGCCTGCGTATGTATGTGAAGTATTTCAGGGCAGGCGCTAACTTCCTGGTCCTCTTGGTCCTCATTTTACTCAATGCCCTAGCACATATCACCTTTGTTCTACAAGACTGGTGGCTTGCTCGCTGGGCCTCTGAACAGAAGCACCTCAATGTGACAGAGCACCTCAATGGCAGCTTCTCTCGGCAGCTGGACCTTGACCTGTACCTAGGTGTTTACGCAGGTTTAACAGCCACTTCAGTAGTGTTTGGCTTCCTTCGCAGCTTGGTCTTCTTTAATGTCCTGGTGAGCTCGGCCCAAACCCTACACAACAGCATGTTTGATGCCGTCCTCCGGACCCCTGTACACTTTTTCGATATCAATCCAATTGGAAGAATCCTCAACAGGTTTTCGAAGGACATTGGTTACCTGGACTCTCTGCTCCCATGGACGTTTGTGGACTTTATCCAGGTATTTCTCCAAGTCATCGGAGTGATTGCAGTAGCTGCCGTCATCATCCCCTGGATCCTTATTCCTGTTGCTCCACTTCTTGCTGTCTTCCTGTTTCTGCGATGCTATTTCCTGCAGACCTCCAGAGACATAAAGCGCCTAGAGTCTACcactcGGAGTCCCGTTTTCTCCcacctttcttcctctctccaaGGCTTGAGCACCATCCGTGCCTTCAAGGTTCAGCAGAGGTTTCAGCAAATGTTTGATGGATATCAAGATCTTCACTCAGAGGCTTGGTTCCTGTTCCTGACTACTTCTCGCTGGTTTGCTGTACGCCTTGATGGAATTTGTTCAATTTTTGTCACCATCACTGCTTTTGGCTGCATTTACCTGGGGGATGGACTGGAACCAGGTGCAGTGGGTCTGGCTTTATCTTATTCAATGACACTTACAGGCATGTTCCAGTGGGGAGTCAGACAGAGTGCAGAGATCGAGAACATGATGACATCAGTGGAGAGAGTGGTTGAGTATGCCGAGCTGGAGAGTGAAGCACCCTGGGAGACGGACAAACAGCCTCCGCATGATTGGCCCAAGGCAGGCGCCATCACCTTTGACGGAGTCAACTTCTCTTACAGTGCCAGTGAGCGCTTGGTCCTAAAGAATCTGACTGTCGTCTTCACATCCAGAGAAAAGGTTGGCATTGTTGGACGCACTGGTGCTGGTAAAAGCTCCCTGATCTCTGCCTTGTTCCGGCTGGCAGAACCTGGGGGACGAATAATGATTGATGGTTTTCTGACTTCTGAGATCGGTCTGCACACCCTGCGTCAGAAAATGTCCATCATCCCACAGGACCCAGTTCTCTTCACTGGCACCATGAGGAAGAATCTGGACCCTTTCAGGCAGCACACAGATGAGGACCTGTGGAATGCACTCCAAGAGGTGCAGATGAAGGCCGTGGTGGAGGACCTGCCCAATAAGCTGGAGACTATGCTGACTGAGTCCGGCTCTAACTTCAGCGTGGGCCAGAGGCAGCTGGTGTGCCTGGCCAGGGCCATCCTCCGGAAAAACCGCATCCTCATCATTGATGAGGCCACAGCCAATGTGGACCCAAGAACTGATAGCCTCATCCAGCAGACTATCCGGGACAAGTTTCAAGAGTGTACCGTCCTCACCATTGCTCACAGGCTCAACACTATCATTGACTGTGACAGAATACTGGTTTTGGATGCTGGCAGGATCCAGGAGTATGACGAGCCATATGTGCTGCTCCAGAACCAGGAAGGGCTCTTTTACCAGATGGTCCAACAGACAGGCAGAGCTGAGGCCGCCTCACTGCTGCACACAGCCAAACAGGTTTACATGAACAAAAAGCGAGTGACAGACGTGCGCTGCGCCAAGGACATCTGTGCCATCTTTGAGACGTCTCTTTGACAGTTTGGAGAGTCGCTGTGGCCCTCACGCTCATCATCACTGACCAAATCTATCACCAGATATACTTAGATTCCTTCctgtttattaaaatgtattttgactCCCAGCAGGCCGCGTGTAGTATTTGATTGGCGTAGTCCTTTGGTGTGGAACAGAGGCAAGTATCTGAGGCAGGGTGTGCCTTTATTGACATCATATTACTGCATGGCTGTTTATTGATTACACCCTgctatgtttatgtatgcatgtTCTGGCCTCTTGGGTAGCTTCAATTTGGCACTAGTGCTAAAAAACTGCAGATATTGGATGTGTTTATCCTGGTGCAATGCATTATTGGTGGcttaaactattcctttaaggcaAACATTGTTTGGTTTCATTATTTGGAAAATGCTTGAAAAGACAAGGAGAACCACAGGAGACAGCGAGTGATGTTTTCAGTAATTATTGTGCCTTAATCAGACTATTGATGTTTTTTGTAATTGCACTGTTTTAATTAAGTAGTCTTCCAGCACTTTGACGATAGTGGTTTTATGTCTACCTCAGCTCTTGTTTGGAAAGAACAGTAAAGTTTAAATGTAACATGTCATGTACTGGCAATGATAATGACTAACAACAAGAAACATTTATTGCCTCTGAGAAATGTTCTCCAGTAATATCaactttctctctttattttttgaTAAATGGGCTGTTGTGGCTTTAAAAGCATAGCACTGACATGAAATTTGATATGACTATTTATAgctatgtatttatttacattgtcTAAATCTTTGcatagttttctttttaaaggtaATATTTCAGGGAGATGCACTTTGTAGTTTAGTCATAAATAAGTGATACAAATGATCACTTATAATGTAGATCAAGTAAAATTCTAATTActacataataataaaacagtatTTCTTGAA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006200 obsolete ATP catabolic process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0042626 ATPase-coupled transmembrane transporter activity molecular_function

KEGG:

id description
K05673 ABCC4; ATP-binding cassette, subfamily C (CFTR/MRP), member 4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168058 lncRNA upstream 145540 18465586 ~ 18465820 (+) True G124976
TU168047 lncRNA upstream 156733 18442288 ~ 18454627 (+) True G124966
TU167992 lncRNA upstream 313740 18234042 ~ 18297620 (+) True G124924
XR_005640983.1 lncRNA upstream 318917 18291410 ~ 18292443 (+) True LOC120569814
TU167982 lncRNA upstream 422228 18188840 ~ 18189132 (+) True G124915
TU168263 lncRNA downstream 163872 18815539 ~ 18816057 (+) True G125098
TU168268 lncRNA downstream 175088 18826755 ~ 18827121 (+) False LOC120570507
TU168266 lncRNA downstream 176193 18827860 ~ 18828360 (+) True G125101
TU168269 lncRNA downstream 177019 18828686 ~ 18828913 (+) True G125104
TU168274 lncRNA downstream 177266 18828933 ~ 18829526 (+) True G125109
XM_039817546.1 mRNA upstream 30330 18535567 ~ 18581030 (+) True uggt2
XM_039817961.1 mRNA upstream 377625 18224248 ~ 18233735 (+) True LOC120569834
XM_039817968.1 mRNA upstream 387749 18214971 ~ 18223611 (+) True LOC120569837
XM_039817969.1 mRNA upstream 387749 18216752 ~ 18223611 (+) False LOC120569837
XM_039817972.1 mRNA upstream 397549 18211953 ~ 18213811 (+) False gpr1
XM_039817076.1 mRNA downstream 23620 18675287 ~ 18677482 (+) True sox21b
XM_039818923.1 mRNA downstream 43439 18695106 ~ 18702552 (+) True dct
XM_039818899.1 mRNA downstream 167086 18818753 ~ 18827547 (+) False LOC120570507
XM_039818896.1 mRNA downstream 170910 18822577 ~ 18827547 (+) True LOC120570507
XM_039818898.1 mRNA downstream 170927 18822594 ~ 18827547 (+) False LOC120570507
XR_005640963.1 other upstream 593947 18010757 ~ 18017413 (+) False hnrnpa3
XR_005640989.1 other upstream 730634 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other upstream 730634 17860753 ~ 17880726 (+) False hoxd10a
XR_005640988.1 other upstream 730634 17860872 ~ 17880726 (+) False hoxd10a
XR_005641003.1 other upstream 1433720 17127881 ~ 17177640 (+) False myo3b
TU168229 other downstream 51361 18703028 ~ 18704528 (+) True G125079
XR_005640959.1 other downstream 1523161 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other downstream 1523161 20174828 ~ 20265148 (+) False myo16
TU168970 other downstream 1840511 20492178 ~ 20521274 (+) False G125627
TU169140 other downstream 2201422 20853089 ~ 20858910 (+) True mpc2b

Expression Profile