RNA id: XM_039818789.1


Basic Information

Item Value
RNA id XM_039818789.1
length 2379
RNA type mRNA
GC content 0.43
exon number 2
gene id LOC120570440
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 14969526 ~ 14973908 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ttctaaatgagagcacacatATGGTGCCTATGATGTGTCAAAGAATGAAAAGCCCTCGATCCCTCCCACTCTGGTTGTAGATTGCACCATGTTAGATAAAACCAGTGACAAAGACCAACAGTCTGAGCACTGCTCAGACTGTGGATGCATCCTTTTACAGTCTGACTCGGATTCAAGCAGCACTTCAGCTCATCCTAAACAGCAACGTGTGCACAAAGCAGTCAGTCCTTCCAAATGTCCATCCTGCCAGGCGGGCAGCAGCCTTCCAAATGGGCGTCGCCGCATCCGCCTGGACCCTCACAGCTGCAGCCTGTGCTCCAAAACCTTCATCTCCTCTGCCCACCTGGCCCTTCACCTCGCCTCTCACAAGGAGAGGAAGTTCAGATGTAGCACTTGTGGGAAGCACTTTCATCAGGCTTCCCACCTGGTGGCACACAAGATGATCCACAGCGGGGACAGGCCATTTAAATGCCCAGAGTGCGGTAAGACCTTCGGCCGCGCCTCGCATCTGAAGACCCACCGGCGGCTTCACACAGGCGAGAAGCCTTTTAAGTGCACCTACTGTGACAAGTCGTTCACACAGAAGGCTGGGCTCCTGGCACACGTCCGTCTACACACAGTGGAGCAGCCATACAAGTGTGAGCAGTGTGGTAAGGGTTTTCGCTCTTTGTCACGCCTGCTCTCTCACAAGGCCGAGGAGTCGTGTGGGCATAACAAACCAGTGTCGGCACAGGCAAAACCAGTGTCAGCACCAGCACTCAACCAGCCCAAGAAGACACAGAGTAGCCCTGAGGATCTCAAGTGTGGCGTCTGCTGTCGCACCTTTGTACGATCATCATACATCAGATTGCACATACGCCTCAACAGAGGACAGCGGCCTTATCACTGCAAAGTGTGCAACAAGACCTTTGCCAGGCTGGATACGTTTGTGAACCACTGTGATAAACACTTACGAGAGAAAGGGGATAAAAGTGTGGTAAAGGAGGTAAAAGACAAAGTTGTTAAACCTCCCTTGTTTGTCCCGCTCTCCAGGCCTCCTCCTTCTGAATCCTTATCCACTCAGCCTTTATCCTCAGAGGTCAACACACGCTCCAGAGCAAAAGCAAAGAGTAAAACAGAGCCATGACCAAGAGGAGTGCATCCACACAGACAAAAATGGTCTTTAACCAAGAAATGTGGCATAAATATTCTGCCATAGCAGATTGTAACAAATGCTGGACAGTATTGTCATGTTGATGTAATTTtcgaaaaaaaaatcccaaaacaaTACAATGATTGAAAAGTTATATgtttacaattacaatttacaaatgatcagaaaaagGGACAGAGAAAGCAAAGTTGTAGTTgaataactaaaaaaaaatactgttatgtGATTTATATCATTAGTTCACCAATTGTTAATTGGTACACTTTGtattaagttattttttatttaaaataattaatttaattttcaatGAATATCTTTGTAAGTACCACAATGTTGCTATTTTAGCCCCCGAGGCTAATTAACACTTGTAACAGTAACATTTCAATGGCGTACATTGTTCACTCTAATCtttaaatattgaaaatatAGTATCTCTAACTATTATAATTCATGGttaatgtgttgttgttgttttacccATACAAGCCTATTGGCATGTATAGCAATCAGAACAAATTacacagagtaaaaaaaaaaaaatacacataaaagCATATTGTGGAGGACTGAACCATTTCTTTTGTTGCACCTTGAGACCACAAATATCTGTTGAAAACAGTTTGTTGTTTCAATTATCAACCATTGTCTTCAATAAAGCATCTTATTCCATCTAGCCCAATGAGCATTCAAGTCAAAGTTACAGTAATGCTACACAGTTCATTCTTAGCATGTAACTTCTTTTGTTAATCTGCCCTTATGACATGGTTCATGGTGTGCCCTATCACCTGGGCCTGTAGTTATCAGGCTTAACATTTTAGGACTACATGTCCTGTCAGATGAGCTTCCTTTGGGCGTCACACTTTATTCCCAGTCAGCAGCAGCTCCCCGCTGATACCTCACTGACCCTAAACTCAACAGAAGATTTATTAGACTGTTTTCCTGTGGATCTCCATGGCTGACGGAGAATCTGTCACCTCCACATGGGGAAACTCTTTGTCCCAACCTATGGACAAAGAGAAACAAACTTTAAGGATACCATTTCCAATTTACAGGTCAAGTTAGGACTCTTGAGAGGCTAATGTTTGAACAAAGTCACATTGCATGAGAGTCACAAATGTAACCACAATGCTGTAAAAGAGAATTAAACAATCTACCACCACTTGGGCATAGTTAATGCATTAGATAAGGAGAGTACAAAGTGAAGATTAAATGTTTGCCTGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU166677 lncRNA downstream 29952 14939331 ~ 14939574 (-) True G123948
TU166611 lncRNA downstream 165194 14803514 ~ 14804332 (-) True G123889
TU166584 lncRNA downstream 239146 14726756 ~ 14730380 (-) True G123878
TU166587 lncRNA downstream 239146 14726756 ~ 14730380 (-) False G123878
TU166578 lncRNA downstream 296145 14673131 ~ 14673381 (-) True G123872
TU166696 lncRNA upstream 10106 14984014 ~ 14984415 (-) True G123959
TU166768 lncRNA upstream 141822 15115730 ~ 15123454 (-) True G124000
TU166770 lncRNA upstream 142286 15116194 ~ 15123945 (-) True G124001
TU166795 lncRNA upstream 204410 15178318 ~ 15196218 (-) True G124014
TU166949 lncRNA upstream 501350 15475258 ~ 15476148 (-) True G124136
XM_039817871.1 mRNA downstream 12748 14943125 ~ 14956778 (-) False si:dkey-67c22.2
XM_039817870.1 mRNA downstream 14041 14943125 ~ 14955485 (-) True si:dkey-67c22.2
XM_039818795.1 mRNA downstream 48877 14905104 ~ 14920649 (-) False LOC120570445
XM_039818796.1 mRNA downstream 51236 14903356 ~ 14918290 (-) True LOC120570445
XM_039818784.1 mRNA downstream 110789 14841299 ~ 14858737 (-) True LOC120570436
XM_039818097.1 mRNA upstream 22581 14996489 ~ 15078401 (-) False dip2a
XM_039818092.1 mRNA upstream 22581 14996489 ~ 15078401 (-) False dip2a
XM_039818091.1 mRNA upstream 22581 14996489 ~ 15078401 (-) False dip2a
XM_039818088.1 mRNA upstream 22581 14996489 ~ 15078401 (-) False dip2a
XM_039818089.1 mRNA upstream 22581 14996489 ~ 15078401 (-) False dip2a
TU166598 other downstream 175029 14784561 ~ 14794497 (-) True G123886
TU166600 other downstream 179620 14784561 ~ 14789906 (-) False G123886
TU166096 other downstream 2349711 12619353 ~ 12619815 (-) True G123481
TU165255 other downstream 5969403 8999462 ~ 9000123 (-) True G122878
XR_005640909.1 other downstream 6166436 8798035 ~ 8803090 (-) False ccnt2a
TU166697 other upstream 10577 14984485 ~ 14993789 (-) True G123960
unassigned_transcript_607 other upstream 443292 15417200 ~ 15417272 (-) True trnak-uuu_17
TU167157 other upstream 1125370 16099278 ~ 16101593 (-) True G124303
TU167228 other upstream 1404701 16378609 ~ 16380765 (-) False gcgb
TU168094 other upstream 3139202 18113110 ~ 18115089 (-) True LOC120569287

Expression Profile