RNA id: TCONS_00006718


Basic Information

Item Value
RNA id TCONS_00006718
length 1775
lncRNA type retained_intron
GC content 0.44
exon number 8
gene id XLOC_003438
representative False

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 24034345 ~ 24044586 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGGAGCGACTCTTCAAGGAGTGCTTGAGATTGTGCCGGGGAACATCTCAGCCACTGCAGGTGAACGAAGTTCTTGCAACGCTTTCACTCTCTTACCAGTTCTTAAATATCCTCCACCATTTTACGCCATTCAAGACAGAATGTGAAAGTGAAAAAATGTGGATCAACAGGAGCATGAATAGACTTCTAACACTCTAAATAGGGAGATTGCAAGTGTCCAGGACGAGATCCCACCTCCTGACCCTGAAGAGTACAAACCTGTTCCAGAATGACCTTGCAAGGAGATGATTGCTACTTTTTCTACTATTCTACCTGTACGAAGGGTGACAGTTGCCCTTTTCGACACTGTGAGGCTGCCATGGGTAGTGAAACGGTTTGCAACCTGTGGCAAGAGCAAAGATGCTTCCGTAACGTCTGCAAGTTTCGACACATGGAAATAGATAAAAACCGAAAGGAAATTGCCTGCTATTGGGAGAATCAGCCGGCTGGATGCCAGAAGCCTCATTGTGCTTTCCATCATGAGAAGCCACGCATCATCAATGGCAACTACTTGGCTCCAGATAAGGggcaGGTAGCGCGAAAGGACAATGAAGAGGCCCCGCTTGAGGAGAAGGTGAACCAAGTCCCTGCACCCAGTGCAAACCCCACTAACCCACAGCTCAGAGGAGTCAAGAGAACTGAGACCCAAGAGAATGTGCCCAGCCCTACTCATCCACCAGTGGTCATTAACCCTGTGGATGACGATGATGAAGATGATCAGTTTTCAGAGGAAGGAGACGAATCTTTAGGAGTCTCACCCCGGAAACTGGTCTCAAGCAAACATGACTCTCTGGACTTTGGTATCCAGACGTTAGAGGAGATCAGGCTGAGGAAAGCACTTATGTCCAACCTAAAGAAAGCTAGGCAGAGCACAGTGCAAGGCTTAGCCCAAATCAGTAGACCTACTGTTGAAAAGGAAAACATTCAGTCTCTCTCACGTCTGGAAGTTAACAATGTCAAGATTGGTTCGTACTAGTGgtacaaaaatgttgttgttgttgttgttggtagaatcaaacagtttatttttctttaattttgtgCTGCAGATTCATCTGGTAAAGAAGTTGGAAAAAGACGAATTGCAGACAGGCTTGGCAAAAGAATTTTGGAAAGAGGTGTGTTTATGAAAACATTTGATTTGGTTGCATGGGTGGgcagtttttgggtgaaccaacCATTGAAGACCAGACCTACTTTCACTCTTTTGGTTGTTTTTAAGTGGACGTTACCCATAATGGGCAGCCAAAGTagcattaaaatattgtttaattatcattttcaattaaccaaaatatttttatcaatttagcACATCATTAAAGCGTTTTCAGAGatgttttcatttgatttaaGATGTCCCTGGGGAAGAAGGCCCACCTTTAAAACGAAGCCTTGCTGAACGTCTCGGTGGAGTTGTTGAATCCTCGACAGATGTGCTAACAAATAAATCTCATAAACCAGTGCACGAAAGACTTGGATTGACAACTGACATGAGTAGCGGTGACAGCGAGCCAAAATCATCCGGAGACATTCGTATAAAAACCCTAGAGGAGATTCGGCAAGAGAAGGCAGCCAAAAACCTCAGCAAAAGTAAAGTTGTTCGTGTTGTGAAAGAAGTGCCGCAGAAAGAGATCAGCCCCTCCAAAAAAAGTGTCAAACCTGTTGCTGGACCTCAAGTTAAAACTTTCTCTGAAATCCTTcacgaaaagaaaagaaaaatgcagGAGAAAAAA

Function

GO:

id name namespace
GO:0016973 poly(A)+ mRNA export from nucleus biological_process
GO:0000346 transcription export complex cellular_component
GO:0046872 metal ion binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-3272 Predicted to enable mRNA binding activity. Predicted to be involved in poly(A)+ mRNA export from nucleus. Orthologous to human ZC3H11A (zinc finger CCCH-type containing 11A).

Ensembl:

ensembl_id ENSDART00000103766

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00006714 lncRNA upstream 11228 24018401 ~ 24024576 (+) True XLOC_003436
TCONS_00008605 lncRNA upstream 13680 24015835 ~ 24022124 (+) False XLOC_003436
TCONS_00006707 lncRNA upstream 122305 23895540 ~ 23913499 (+) True XLOC_003432
TCONS_00008604 lncRNA upstream 133114 23895529 ~ 23902690 (+) False XLOC_003432
TCONS_00008603 lncRNA upstream 438133 23594349 ~ 23597671 (+) False XLOC_003430
TCONS_00006721 lncRNA downstream 21982 24061156 ~ 24083588 (+) False XLOC_003440
TCONS_00008606 lncRNA downstream 22382 24061556 ~ 24083588 (+) False XLOC_003440
TCONS_00008608 lncRNA downstream 24769 24063943 ~ 24083588 (+) False XLOC_003440
TCONS_00008607 lncRNA downstream 24769 24063943 ~ 24083588 (+) False XLOC_003440
TCONS_00008609 lncRNA downstream 24893 24064067 ~ 24083588 (+) True XLOC_003440
TCONS_00006716 mRNA upstream 3614 24027809 ~ 24032190 (+) True XLOC_003437
TCONS_00006715 mRNA upstream 6093 24027715 ~ 24029711 (+) False XLOC_003437
TCONS_00006712 mRNA upstream 27065 24001993 ~ 24008739 (+) False XLOC_003435
TCONS_00006713 mRNA upstream 27816 24002503 ~ 24007988 (+) True XLOC_003435
TCONS_00006711 mRNA upstream 35633 23993298 ~ 24000171 (+) False XLOC_003434
TCONS_00006720 mRNA downstream 7005 24046179 ~ 24056609 (+) True XLOC_003439
TCONS_00006724 mRNA downstream 211967 24251141 ~ 24299538 (+) False XLOC_003442
TCONS_00006725 mRNA downstream 250956 24290130 ~ 24297701 (+) False XLOC_003442
TCONS_00006726 mRNA downstream 259258 24298432 ~ 24310645 (+) True XLOC_003442
TCONS_00006727 mRNA downstream 274757 24313931 ~ 24331318 (+) False XLOC_003445
TCONS_00006700 other upstream 638419 23397270 ~ 23397385 (+) True XLOC_003428
TCONS_00006698 other upstream 1321673 22714015 ~ 22714131 (+) True XLOC_003425
TCONS_00006686 other upstream 2385166 21650522 ~ 21650638 (+) True XLOC_003418
TCONS_00006677 other upstream 2983460 21052228 ~ 21052344 (+) True XLOC_003409
TCONS_00006668 other upstream 4002619 20033066 ~ 20033185 (+) True XLOC_003402
TCONS_00006723 other downstream 139649 24178823 ~ 24178938 (+) True XLOC_003444
TCONS_00006731 other downstream 300188 24339362 ~ 24345423 (+) False XLOC_003446
TCONS_00006732 other downstream 300200 24339374 ~ 24345421 (+) False XLOC_003446
TCONS_00006735 other downstream 300211 24339385 ~ 24342063 (+) False XLOC_003446
TCONS_00006738 other downstream 300222 24339396 ~ 24340731 (+) False XLOC_003446

Expression Profile

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