RNA id: XM_039818880.1


Basic Information

Item Value
RNA id XM_039818880.1
length 2193
RNA type mRNA
GC content 0.49
exon number 7
gene id piga
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20699231 ~ 20706004 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTAAAAGTTGTTTGCAATCCGCCATTAaataagagaagaagaagctaaCTGTTAGCTCAGGGTTAGCGAGTAGAAATGAATTTACATCTGAAAAAGAgttgtgtgtattttcactgGCTGGAACAGGATTGACATTTTTCCAAGCACTAGTGAGGTGCACAGCCAAACAAGGCATCTACAATGGGCCAACGAAGGCAAGCAGCAGCTGTGAATAACCCTTCACCTCAGAGAGTCTCTGGAGCTCGTGCAGAGGTTTGCGGGGTCCCCAGCAGGAAGCACAACATCTGCATGGTGTCCGACTTCTTCTATCCAAATATGGGAGGAGTAGAAAGTCACATTTACCAGCTATCCCAGTGTTTGATTGAAAAGGGACACAAGGTGGTAATTGTCACCCATGCCTATGGCAGGAGGAAGGGTGTCAGGCACCTGACCAATGGACTGAAGGTCTACTACCTCCCCCTGCAGGTGATGTACAACCAGTCCACAGCCACCACCTGCTTTCACAGTCTCCCACTGATGCGCTGTGTGTTTGTAAGGGAACGCATCACTGTGGTGCATGCACACAGCTCGTTCTCCGCCATGGGCCATGATGCACTGTTCCACGCTAAGACCATGGGCCTTAACACGGTGTTCACTGACCACTCACTCTTTGGCTTTGCTGATGTGAGCTCCGTGCTGACCAACAAGCTTCTGACCGTGTCACTGTGTGACACCAACCACACTGTGTGCGTGTCGTACACCAGTAAGGAGAACACGGTGCTCCGTGCAGCCCTCAACCCAGAGATAGTGTCTGTTATCCCCAACGCTGTCGACCCTACGGACTTCACCCCTGACCCCTCCCAGCGCCTAGACGACAGGATCACTATTGTTGTGATCAGCCGTCTTGTCTACCGCAAAGGAATCGATCTTCTTGGTGGAATAATTCCAGAGCTCTGCCTCAAACACCCAGATCTGCACTTCCTAATCGGTGGAGAGGGACCTAAGAGACTTGTGCTGGAGGAAGTAAGGGAGAAGTACCAACTACATGACAGGGTTCGCCTGCTGGGGGCTTTGGAGCACAAAGATGTTCGTGGAGTTTTGGTGCAGGGTCACATCTTCCTCAACACATCTCTGACTGAAGCGTTCTGCATGGCCATACTAGAAGGAGCCAGCTGTGGACTGCAGGTGGTTAGCACCCGTGTGGGGGGCATTCCTGAGGTGTTGCCTGAGGAGTTGATTACCATGTGTGAGCCTAATGTGCGGGCGTTGTGTGCTGGTCTGGAGACGGTCATTGCCCAGCAGCGTTCAGGGTCTGTCCCCTCCCCCGCCTCCATCCATGCACGTGTGCAAAACCTCTACACCTGGAGAAATGTTGCTGAGAGGACTGAAAAGGTGTACGACCGAGTGGCTGGAGAAGAGGTGCTTCCCCTTGACAGACGGTTACGGAGGCTGAGGGCCCACTGCGGCCCTGTGGCTGGCTCCATCTTTGCATTCGTTGCTGTTTTAGACTTCCTCTTCCTGCTGCTTCTGCAGTGGTGGGTGCCAGATCGGGTCATGGATGTCGCTGTGGACGCCACCGGCCCTCACGGACTGTGGAGGCAGGTACCCAGCAGTAAAGTAGGAGCTCATTCTAAAAGTGCCATGAAGCGAGCAGTAGTGTCAACATTGTGATCGCTCCATACCTCTGCCTCACTTCTAGCTGCTTAAATGGTGTTGTATGTCTATCTCTTTGGGGTGCCAGTTGACATATGAAACACTGAATGCTGAATGTGCTCATGGCAACCCTGAACATTGTTTACATTTACTTATCAAAAAGGGACCTTGTGTGAAAGCATTTTATCTAAAAATTGGGAGCAGCATTGTTTCATACTTAATGATTAAAATGGAAACCTGTGTAATTCCTTGGAgctttataaagcacttttttaatatttagtaTAGATTGCACCAAGTGTGTAAGGTGTAAACAGCAGTAACCTATTTTCAGTTGGATGCACACTTCATTTTGAACAATGGTTTTGTCGGTAAAGGTCACAGTTTGTGCAAAGCTGTAATTATATCAGTGCAAATTCCTTTGTTTGCCTATTTTTATATCATCAATGCTACTTTTTTGTTGCATAATTTGAAATGTGACACCTGGGAGTTTTTTCAGATGATCGTGTGTCTTCCAGACAATCCATTCTGGAAAATAAAGCATACTTTCTCATGTTTCA

Function

GO:

id name namespace
GO:0006506 GPI anchor biosynthetic process biological_process

KEGG:

id description
K03857 PIGA, GPI3; phosphatidylinositol N-acetylglucosaminyltransferase subunit A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169071 lncRNA upstream 12184 20686697 ~ 20687047 (+) True G125702
TU169064 lncRNA upstream 20155 20667680 ~ 20679076 (+) False LOC120570651
TU169060 lncRNA upstream 20155 20669408 ~ 20679076 (+) False LOC120570651
TU169061 lncRNA upstream 20155 20669768 ~ 20679076 (+) False LOC120570651
TU169063 lncRNA upstream 20155 20672049 ~ 20679076 (+) True LOC120570651
TU169089 lncRNA downstream 6402 20712406 ~ 20713194 (+) True G125718
TU169119 lncRNA downstream 89041 20795045 ~ 20825545 (+) True G125738
TU169132 lncRNA downstream 126490 20832494 ~ 20835754 (+) True G125749
XR_005641074.1 lncRNA downstream 197990 20903994 ~ 20911358 (+) True LOC120570516
TU169214 lncRNA downstream 204819 20910823 ~ 20911178 (+) False LOC120570516
XM_039817758.1 mRNA upstream 50065 20641212 ~ 20649166 (+) False gabpa
XM_039817759.1 mRNA upstream 50065 20641400 ~ 20649166 (+) True gabpa
XM_039818459.1 mRNA upstream 144877 20544377 ~ 20554354 (+) True sik1
XM_039817239.1 mRNA upstream 208722 20485226 ~ 20490509 (+) True ing1
XM_039818591.1 mRNA upstream 214170 20479271 ~ 20485061 (+) True naxd
XM_039817120.1 mRNA downstream 1237 20707241 ~ 20710700 (+) True asb11
XM_039818275.1 mRNA downstream 18856 20724860 ~ 20734285 (+) True xk
XM_039818569.1 mRNA downstream 32788 20738792 ~ 20774655 (+) True sytl5
XM_039818570.1 mRNA downstream 32788 20738792 ~ 20774655 (+) False sytl5
XM_039818571.1 mRNA downstream 32789 20738793 ~ 20774655 (+) False sytl5
TU168970 other upstream 177957 20492178 ~ 20521274 (+) False G125627
XR_005640959.1 other upstream 433993 20174828 ~ 20265238 (+) False myo16
XR_005640960.1 other upstream 434083 20174828 ~ 20265148 (+) False myo16
TU168229 other upstream 1994703 18703028 ~ 18704528 (+) True G125079
XR_005640963.1 other upstream 2681818 18010757 ~ 18017413 (+) False hnrnpa3
TU169140 other downstream 147085 20853089 ~ 20858910 (+) True mpc2b
TU169142 other downstream 154148 20860152 ~ 20865442 (+) True G125757
XR_005641085.1 other downstream 913344 21619348 ~ 21627452 (+) False sox1a
XR_005641000.1 other downstream 949127 21655131 ~ 21688802 (+) False LOC120569986
TU169945 other downstream 2101189 22807193 ~ 22815102 (+) True G126363

Expression Profile