RNA id: XM_039818892.1


Basic Information

Item Value
RNA id XM_039818892.1
length 2746
RNA type mRNA
GC content 0.45
exon number 2
gene id LOC120570503
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 18428988 ~ 18441372 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACGGGAGCCGAGCGGGGACCAGCTGGTtacgcagcggccgtgggtcTCCACCCGAGAGTATGGCGGCTGGGATTGCACAGGAAAGCGAGGGTGAAGCGGAGACATGCCAGAGATggtgaaaaagaaacaaagagacGCAAGTTCTTTAATTACGTGTGGAAATAGTTGTAGTTGGTGCTGTTTTCCCGAGGCGGCATCCGGCTTGAAAAACTGCGCCTGCAGTTCACTGTAGGGGCTATAAGCCAGCGTTTTACCAGTGTCCTCGATGGagcaagtttgtttttttctgattcaGACAGAGGGGTGAGCTAAGCAGATGAAAACCCGCAGGCTCCACATCATCGCGGGCGATATTTTCTTCCTCCCAGGGCACATTTTTGGACAATTGCAGTCATCGGATGCCCGTATAGCTGTCAGTGTCTGGCCTGCATGGGGGGAATTTGTACAATGAAATCCATCTTGGGGCACCGAGTCTTTGTGCTCTGCCGTAGCTGAGCAGCAGGCGAGCAGGACTGTGTTATTGACAACCCGTTCAAAATGGGACACGAATGGTGAATGTAATTCGTGCGGGAACATTTTGAGTTCATTTCAATGACGCGCGGAGATTTGATAACGTTACCTTACGACTTGATTTAAATCAACGATGCGCGAGTATAAAGTGGTGGTCCTGGGCAGCGGTGGGGTCGGGAAATCCGCCCTCACTGTGCAGTTTGTTACCGGGACGTTCATTGAGAAGTACGACCCCACTATTGAGGATTTTTACCGCAAGGAGATCGAGGTGGACTCCTCACCCTCGGTGCTGGAGATCCTTGACACCGCTGGTACCGAGCAGTTCGCGTCCATGCGGGACCTTTACATCAAAAACGGTCAAGGATTCATTCTGGTCTATAGCCTTGTCAACCAGCAAAGCTTCCAGGACATCAAGCCGATGAGGGATCAGATCATAAGAGTGAAAAGGTACGAGAAGGTTCCTGTGATCCTGGTGGGGAACAAGGTGGACCTGGAAAGCGAGAGGGAGGTATCGTCCAGCGAAGGTCAGGCCCTGGCTGAGGAGTGGGGCTGCCCGTTCATGGAGACCTCGGCCAAGAGCAAAACCATGGTAGACGAACTGTTCGCTGAGATCGTTCGGCAGATGGACTACGCCGCCCAGCCGGACAAGGATGACCCATGCTGCTCCTCTTGCAATATACAATAGCCCCGGGGGGCTCGAGGAACAGGCCAGGCAAAAAGTCTACTTAGATGAAGCTACTTCGACCCgcagcagagagacacacacttagacacacacacacatgcacatgccaATTAAACAGAAGAAAAATTCATGGTTGAACGCAATGGATTTTACTCCACAGAGCATAAAATCAGCAGTGACATGATTATTAATAACGACGTGTTagtaatgaatacattttgaatgaGGAATGCCTGGACTTTGCCACAAGAGAAAttgacaaatgacaaaaaaaggaaCATGCCCTCGCCTTATGTTACTCTCTTCTGTTGTTTGGGTTTGTTTGGATCTTTTTgagtatgggggggggggaatcatcAGCAAACAGTCACAGATCAGGATCTTTACTCTTTGGGTTGTTCTACAGTCTGTTATAAGTaagttaaatgtttattacagGAGACACATTTTTTGTTACCACGACTCGGTTGCAAGTAGCTACTGTACACAAATCCAAAACAGATTTCTGGGATCCAGTTGTTTTGAATATTGAGGAGTATTtgatttacagtatgtacaatTTTTCTCCCAGCTTATTTTGTGCAGAGGTTGGTGGGATGTTTTTTCTACTCATCACAGGGCTGAACCAAAGAGGTGACCTGAAAGCACCtccattttcttatttttttattttcccagtcgttaaaaaagcaagggAGAGAAAATGGTGGACAAGTCAGTGTCTTTCTCGAAACATTGGTGCAGTCATCTCTTTCCTACTTTCTCACTTTGAGATACAATAGAAAACAATAGCAGAGTCTTTCACATAAATGTGTGATATTTTGTTTTCCTCTCTGAGAGACTCTGACAGCAGATTGCCGAGTAGTAATATAACTAATTGCTTCATCCTGATGGGACAAAAAGTTCTTATCTTTTCAGTGTTTGAATATCTACAGACAATCTCTCTTTTCAGGAATGGGTGACATTTAAAGTGAAGATGCCAACATTTGTCctactttacattttctttttctcctccgATCAATATGAAATGAGGTGCTCAAGAGTTTCAACATCCTGATCTCATTCTGTATGTGCTCAGAGTATTCAAATCCATAGTAACAAATAGTAATGACGAAggcgatgatgatgataatgatgataataagaTTAATAAATGgtagtgtaaatattttgtattgAAAGTGCCAGCTCCTGTTAAGACACTGACTCAACACGTGGAATTGTCAACTGTATGCATGGCtagtaaacaaaaaaaggacTCTTATTGTTTGAGATAAATATAGGCTGTGGAATTGTGCAAACCAAACACATACACGTCTGGATCTGGACACTGGCTCAACTGTACATCTGTGTTGCCACGGGAACCAGACTTTCCCCGTGTAAccattttcattgttgattttatatttttttatgtgacCATTTACTCTTTATTCCCTCTCTGAGTGGTGACACTGTTACATTTGACACCTAAACAATAAAAACGTGTTCAACACTCGACTGAGGCTTCCAAGCTTAAGTGAAATGAAGTGGGTGGACTGACATgtt

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0016020 membrane cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07837 RAP2A; Ras-related protein Rap-2A

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640987.1 lncRNA downstream 217032 18208738 ~ 18211956 (-) True LOC120569840
TU168090 lncRNA downstream 336458 18092327 ~ 18092530 (-) True G125000
TU167930 lncRNA downstream 405511 18022409 ~ 18023477 (-) True G124872
XR_005640876.1 lncRNA downstream 606501 17737284 ~ 17822487 (-) False LOC120569506
TU168246 lncRNA upstream 259515 18700887 ~ 18702962 (-) False G125090
TU168251 lncRNA upstream 259515 18700887 ~ 18702696 (-) False G125090
TU168245 lncRNA upstream 260360 18701732 ~ 18702696 (-) False G125090
XR_005641073.1 lncRNA upstream 374474 18815846 ~ 18819321 (-) True LOC120570508
TU168264 lncRNA upstream 374474 18815846 ~ 18816009 (-) False LOC120570508
XM_039817990.1 mRNA downstream 9738 18352353 ~ 18419250 (-) False LOC120569851
XM_039817989.1 mRNA downstream 9738 18352353 ~ 18419250 (-) True LOC120569851
XM_039817927.1 mRNA downstream 77725 18261889 ~ 18351263 (-) False LOC120569811
XM_039817924.1 mRNA downstream 77725 18261889 ~ 18351263 (-) False LOC120569811
XM_039817923.1 mRNA downstream 78039 18262862 ~ 18350949 (-) False LOC120569811
XM_039817843.1 mRNA upstream 1162 18442534 ~ 18459117 (-) False LOC120569776
XM_039817845.1 mRNA upstream 1162 18442534 ~ 18459116 (-) False LOC120569776
XM_039817844.1 mRNA upstream 1162 18442534 ~ 18459116 (-) True LOC120569776
XM_039817846.1 mRNA upstream 1162 18442534 ~ 18459115 (-) False LOC120569776
XM_039817847.1 mRNA upstream 1162 18442534 ~ 18459115 (-) False LOC120569776
XR_005640956.1 other downstream 265239 18156732 ~ 18163749 (-) False prkra
TU168094 other downstream 313899 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other downstream 313899 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other downstream 313899 18113572 ~ 18115089 (-) False LOC120569287
TU167228 other downstream 2048223 16378609 ~ 16380765 (-) False gcgb
TU168240 other upstream 254108 18695480 ~ 18699802 (-) True G125089
TU168241 other upstream 254108 18695480 ~ 18696368 (-) False G125089
TU168243 other upstream 260276 18701648 ~ 18704552 (-) True G125090
TU168242 other upstream 261723 18703095 ~ 18704677 (-) False G125090
TU168244 other upstream 261757 18703129 ~ 18704677 (-) False G125090

Expression Profile