RNA id: XM_039818911.1


Basic Information

Item Value
RNA id XM_039818911.1
length 2527
RNA type mRNA
GC content 0.52
exon number 9
gene id ildr2
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 20911765 ~ 20927324 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tatAGAAACAACACCACTAACTCTTGTGTTTCATAGAGATTGTTGGACAGGAGTTGTCAGTAGACATATATCAGATCACTGTTGTGTTTGGACTCACCTCTGTATGAAGTGGTACAGTCCCGTTAGTCGCAGTCCGTGAGTCCTGTTTACTGCAGCAGTTAGCGGACAACCAGAATGACCAACATGCGGATAAAAGGTACTATACTATAAAACGGACTATATAATGAACTTTTACCGGCTGGCTATTTTACTGGGAGTATCAGtgtgtgtgtgcgatggTGTGCATGTCACAGTGCGGGAGAAGCGGCGGTTTGCAATGCTCTTCCAGTCGGTGGTCCTCCCGTGTCAGTACCAAACAGCCTCCACTCAGACCCCGGTGGTCCAGTGGTGGTACAAGTCCTACTGTCGAGACCGCACACGAGAGTCCTTCACCGTGTCCGAGAGTCTGGGCGTCAAGTCCTCCGAGCTGGGCGCCACATCCCACCTGGAGTGCTCCGACAGCGGCCGCACAGTTCGAGTTGTGGCCTCGGCGCAGGGAGCCTCCATGACGCTGGCTGAGCACTACAAAGGAAGAGACATCGCCATCGTTAACAAAGCAGATTTACGTATTGGGGAGCTGCAGTGGGGCGACAGTGGAGTGTACTTCTGTAAAGTCATCATTTCCAATGATCTGGAGGGGAAGAATGAAGCCCAGCTGGAGTTACTGGTACTCGGCAGGACAGGTCAGCAGGACGATCTCCTACCTGAGTTTGATGTGGAGTTTATGCCAGAGTGGGCATTTGTGGGATCTGTAGTCCTAGGCAGTGTCTTGTTCCTGTTATTGATGGGGATCTGCTGGTGCCAGTGTTGTCCTCACTCCTGCTGCTGCTAtgtccgctgctgctgctgtcctgaCACCTGCTGCTGTCCACGACACCTATACGAGGCAGGGAAGATGGCAAAGAGTGGACCGCCTGCTCAAGTTGTGTATCCCTACTACATTCCCGGTGTTCCTGCTGGTATTCCTCTTGTCCCTTCATCCCATGTGGAGCCAAATATCGCCTCTATCCCCTCAGTGGAGAATAACCTGGCTGGAGCCAGTAGCCTCTCAGAGCTGAGCTCTCTTCATGATGGAGGGAATACAGACTTCAGACACACCTATCAGACGGTGCAGATGAAGGCGCTCCCGCCCATCGCAGACCTAGAAGACCAGTCAGTGCTGAGAGCAGCTCCACATACACAGAGTCGAAGGCCCAGGCGGGACAGAGGCAACCACTCAGACGACGAGCTCGACAGAAGGTGGAACCCGCGCTCAGAGCACCTGCAGAGGAAGACGTTGAGCAGAAGAGGGCGCACCGGCTCCCTGGACGAGCTGGAGGATTTCGCCCGGTCTTACGGCTCCCGGGGACGTCGCGCTGAGCCTCCAAACCGGGCCTACGAGCGGGATTACAGCCCTCCCAGGCGTTTCTACAGAGATGAAGATGATGGCTGGGGCCGCCGCAGCCCCTCACCTTTACCACAGAAGAGAAGGGACACATGGGACAGTGATCGTCCCTGTCGACTGCCCCAAAGCAAAGGATACGACGACGCCTTCCTCAGGAGCGTGCTGGACAGCAAGGCCAGGGGGCGGGGAGGGGACAGTAGTGCTTGTAGACCGGACGAGGACAGTGACACTCCCTCTAAAGGCAGCTCCAGAGGAAAGGGCAGCGATAGTTACTACAGCCGGTCGCCTAGCAACCGTCCAGAAGAGGAGGACCCTTTGCCTCCGTACTCTGAGTGGGAGGCGGAGCGGAACCGCAGGGCTGACGCAACCACAGACCGGTACCGCACTGTAGAGCCTCCCAGATCAGAGCGTTACAGGACCACTGAACCAGCCATGAGGCCTTTCTGTTACACCCGCCCCCACCAGGGAACTTCCCATACACTACAGGGGGGccgagaggagagagacaggagccGAAACCTGAGCACTGCACTGAGCAGAGGCTCTCTCATAGTGTGACAAGGTTTCCCAGCCTCGACCTGCACAGCACTGCCACTCCGTTCGTTTAAACCGTCTTCTTGCTACGCAGGAGAAGCTAACTGTTCTGCCATCAGTCACATGAAGTCTGGCTCGTCTCACTGAAAATAACTGCACCGAAAAAAACAGCGTGGATGGAAAATGCTGAGAAATGAATATGCACAAAGCAGCATGTGCAGTCATGTCTTACAACGTTTTTTAATCATGTGCATGAATTACTTCTGCATGTGTAGTCTGCAGATGTTATGTATGTGGTGTGTacatcagttttatttgttgAGTTGAGTGACTGGATTTACTGAAACCGGTgccaagatgtttttttttattattatctgcCATTTTTTCTATCTGTATAATGCCACACCCTAGTATTTTCCTACAGACTTCATATTTCTCACTCAGTACACAACACCTCAGGTTtactttgtatttgtgtttgtctgttgttgatattgtactgtatgtactgtaagtaCTGTACCTTGAATTTGTTCTGCAGAttattaaaggggaactatgcagtta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU169245 lncRNA downstream 959 20910570 ~ 20910806 (-) True G125839
TU169199 lncRNA downstream 51774 20859599 ~ 20859991 (-) True G125800
TU169197 lncRNA downstream 51832 20859599 ~ 20859933 (-) False G125800
TU169178 lncRNA downstream 152540 20757707 ~ 20759225 (-) True G125784
TU169175 lncRNA downstream 173477 20734609 ~ 20738288 (-) False LOC120570047
TU169259 lncRNA upstream 25612 20952932 ~ 20953578 (-) True G125845
TU169254 lncRNA upstream 26341 20953661 ~ 20960064 (-) True G125842
TU169255 lncRNA upstream 26685 20954005 ~ 20960064 (-) False G125842
TU169262 lncRNA upstream 46912 20974232 ~ 20976915 (-) True G125848
TU169270 lncRNA upstream 51681 20979001 ~ 20980656 (-) False LOC120569741
XM_039818907.1 mRNA downstream 3611 20900974 ~ 20908154 (-) False ildr1b
XM_039818906.1 mRNA downstream 3611 20900974 ~ 20908154 (-) True ildr1b
XM_039818902.1 mRNA downstream 12320 20885649 ~ 20899445 (-) True me3
XM_039818903.1 mRNA downstream 17248 20885649 ~ 20894517 (-) False me3
XM_039819032.1 mRNA downstream 46207 20861214 ~ 20865558 (-) True rpl24
XM_039817255.1 mRNA upstream 183 20927503 ~ 20933378 (-) True gpa33b
XM_039818219.1 mRNA upstream 32753 20960073 ~ 20967636 (-) True LOC120569994
XM_039817780.1 mRNA upstream 51704 20979024 ~ 20986633 (-) False LOC120569741
XM_039817779.1 mRNA upstream 51704 20979024 ~ 20986633 (-) True LOC120569741
XM_039817782.1 mRNA upstream 59649 20986969 ~ 20992931 (-) False dcun1d2a
XR_005641101.1 other downstream 47812 20863785 ~ 20863953 (-) True LOC120570677
TU168946 other downstream 444580 20464109 ~ 20467185 (-) True G125620
TU168944 other downstream 450136 20459162 ~ 20461629 (-) True G125619
TU168785 other downstream 988071 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168717 other downstream 1115727 19790531 ~ 19796038 (-) False LOC120570223
TU169256 other upstream 31003 20958323 ~ 20960064 (-) False G125842
TU169333 other upstream 265588 21192908 ~ 21198041 (-) True ecrg4a
XR_005640943.1 other upstream 528246 21455566 ~ 21461127 (-) False cracdla
TU169712 other upstream 1304765 22232085 ~ 22234857 (-) False LOC120569718
XR_005641037.1 other upstream 1604314 22531634 ~ 22582407 (-) False si:dkey-100n23.5

Expression Profile