RNA id: XM_039818984.1


Basic Information

Item Value
RNA id XM_039818984.1
length 7042
RNA type mRNA
GC content 0.53
exon number 27
gene id tanc1b
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 16105436 ~ 16207591 (+)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGATTCCCTGCCCTCTGTGTATGTGCCTCCCTAGATGACCTCAtgcggggaggaggaggaggaggaggaaccaGCGTCCCGTAGCCTACCTTGGTGGATCAAGTGGGGATTGAGTTCGTTTGGAGATACGCTGGAAGACTGGGAAAACTTTTTTGGTACTTTCATGTCCATGCCATTTATTAGGGGCCCTACAGAGAGGCCTGCAGGAATCTCGCCATGTTCAAATCAGTGCTGAAGAAGAACAGAGATGGAGGCAAGGGGAGCAAGAAGGATTCAGGTGATGTCCACAGCCACAGTGCCCAAAGAAGATTCCCCCCTGAGGGAAACCCTCAACTCCAGGGGCCTGGCAGCGGTCACCCTAATGTCCCGGATGATGTTTTCAGATTGAGCCTGGCCAAAGGAGTGTCCATGTCTCTTCCATCCTCACCTCTCCTGCCACGACAGTCCTACATGATGCCCTTACGCCAGAGCAAGAGATCACCAGGTCCAATCAGGAAGCCCAAATATGTGGAGAGTCCTCGCATTCCTTCTGATGCCATCGTTTCAGCACTGAGGAAGGTGGCCGATAACAAGGAGTCCTCAAACAATGAGCTGCAAGCAGATAAACAACCAagctcctcctcccctgccacTCAGGAACTGATGACAAGGCTGGGCTTTTTACTAGGAGAAGGGATCCCGGGTACGGCACGCATACCTATGGACGACAAGAATGAAAAGaagTGCTCTGTGACTAGCCAGGGTATCAGCCCCTGCTCTACACTGACCAGCAGCACGGCATCTCCCAGCACTGACAGCCCATGTTCCACGCTCAACAGCACGACTAGCCACCCCCCTCTCAGCTGCTCCAGCCCCTGCGGGACCATCACAAGCCCCAGCTCCACACTTGAGAGCAAAGACAGTGGGATCATAGCCACCATCACTAGTTCTTCGGAGAATGATGACCGCAGTGGCTCCAGTCTGGAGTGGAGTAAGGATGGCAGCCTGAGAGGCAGCGGGCGCCATGGCCTGGCACAGAGTGTGCGGGCTGACACCTGCTCTCCCGTGGCCGAAGAAGACTCCAACAGTGCCACAGCAACGCCAGCCGACACACCATCCAGGACAGACCAGCAGCAGTCAAACACATCAGCAGGGGCACCGCAGCCTCCAAGTCACTCACCTGAGGGACCCATTGCATACCCATCACAGACATCTTCTGCCCTCATGATGCCAAGGCCGAACTCTGTAGCAGCGACCAGTTCCACAAAGCTGGAAGACCTGAGCTTTCTTGATGAACAGCGGAACACCCCCCTGCGGACATCTATTCGTCTACCATGGCATAATACAGGAGGAAGGCCACCTCAGGACTCTAAAGCTCGTTTTGCTCCCTACAAACCCGTGGACATCATGCTCAAGCCCTTGCTGTTTGAGGTGCCCAGCATCACTACAGACTCTGTGTTCGTGGGCCGAGATTGGCTCTTTCAGGAGCTGGAAAATGTCCTAAAGGCCATTGAGTCCACAGAGAACCACGGCGTTGTAGTGGTGGGCAGCGTTGGTTATGGGAAGACAGCCATTATCTCCCGGCTAGTAGCACTGAGCTGCCACGGAGGCCGAATGCGCCAGATCGCCTCCAACAGTCCCAGTGCCTCCCCAAAAAGTGGTGGGGGACCAAGCACAGAACTTCCTCTCAGCCAGCCACCACAGCCCACTCCACCTGCCAGTGCAACCAACACACTGAGGACCAACAGCTGCCCGGGGACCCCCGAGATGCAGCGACGTAGGGAGGAGGCTGTCAAACGCTTGGCTGCAAAGGTGGTGGCATATCACTACTGCCAGGCGGATAACACGTACACTTGCCTGGTACCAGAGTTTGTTCATAGTATCGCTGCCCTGCTGTGCAGAGCACACCAACTCAGTGCGTACCGGGAGCTGTTGCTGAAAGAGCCCCACCTCCAGAGCATGCTGAGCCTGCGCTCCTGTGTCCAGGACCCCATGGCCGCTTTCCGGAGGGGGGTCCTTGAGCCACTAGCCAACCTTCGTAAAGAGCGGAGGATTCCAGAGGAGGACCACATCATCTTGATAGACGGGCTGAACGAAGCGGAGTTCCATAAGCCTGACTACGGAGACACCATTGCCTCTTTCATCACGAAGATCATTGCCAAGTTCCCCTCCTGGCTTAAACTGGTGGTCACTGTCCGGGTCAATTTACTGGAGATCACCAGCCTTCTGCCCTTCTCCAAGATCTCCCTAGATGACTTTTCCAACAACATAGAGATAAGCAACGACCTCAATGCGTATATCCAGTACCGTATCAATGGCAGCAAGGATATCATGAACAATATTAGCCTGAATGGCAAGGCCGACCCTATCACAGTCGGCAAGCTCAGTAGCCACCTGATCTCCCGCAGCCAGGGTTCCTACCTGTATCTTAAGCTCACCCTGGATCTGTTTGAGAGAGGTCACCTGGTGATCAAGAGTGCCAGCTACAAAGTCGTGCCCGTCTCGCTGGCTGAGCTCTACCAGTTACAGTGCAACATGAAGTTCATGACCAATTCAGCCTTTGAGCGCTCACTGCCCATCCTCAATGTGGCGCTTGCCTCACTGCACCCCATGACTGACGAACAGCTGTTCCAGGCCATCAACGCCGGCTTCATCCAAGGGGAGCTGCAATGGGAGGACTTCCAACAACGCATGGAGTTGCTCTCATGCTTCCTCATCAAACGGCGGGACAAGACGCGCATGTTTTGCCACCCTTCATTCAGAGAGTGGCTTGTGTGGAGAGCTGATGGAGAGAGTACAGACTTCCTCTGTGACCCCAGGACTGGCCATGCTCTTATGGCTTTCATGCTTTCCCGCCAAGAGGGGAAACTGAATCGTCAACAGACCATGGAGCTGGGGCACCACATCCTCAAAGCACACATCTTCAAGggccTCAGTAAGAGAACAGGTGTGTCATCCAGTGTGCTGCAGGCTTTGTGGATTAGCTGCAGTGCCGATGGCCTTTCTGCAGCCTTGGCCTCCCTGAGGAATCTCTACACACCCAACGTTAAGGTGAGCCGCCTGCTGATGCTGGGTGGGGCAAACGTGAACTACCGTACTGAGGTCCTGAACAACGCGCCAGTGCTTTGCGTCCAGTGCCACCTCGGTCATCAGGAAATTGCCTCCCTGCTGCTCGAGTTTGGGGCCAGTGTAGATGTGGTGTCTGAAAATGGCATGAACCCCCTCTGCTTCTCAGCCGCTGCAGGGCACTTGGGACTAGTCATGCTGCTCTGtaagagggggggcaagGTTAATCATGTAGATAAGAGTGGTCAGTGTGCACTGGTCCATGCCGCTCTCCGAGGACACCCAGAGATTATCCAGTACCTGCTGGAGCTAGAATGGAGTGCTGAGGGGCAGCAGCAGGACTGCGCTCTGAAGAACAAAGCTCTTCAGCAGGCTTTAATAGCAGCCTCCAGCATGGGACACACACAGGTTGTGAGAGGCTTGCTGGTGTTGAATAATGAGCATGCTGTGCAAGTTGATAGCCACGACACTCTGTGGGGAGAGACAGCCTTGACGGCAGCAGCAGGCAGGGGGAAGATGGAGGTATGCAGCTTCCTGCTGGAGCAGGGGGCATTGGTGCAGCAGGTCAACCGGCGGGGGGTGTCTCCTCTATTCTGCGCTGTCAGACAGGGACACTGGCAGATTGCAGAGCTACTGTTGCAGCACGGTGCTGATATTAACATCAGCGACAAGCAGGGCAGGACCCTACTCATGGTGGCTGCCTGTGAGGGTCACCTGAGCACTGTAGAGTTTCTGCTTTCTAAAGGTGCATCTTTGACTTCGATGGACAAGGAGGGACTGACACCCCTGAGCTGGGCATGTTTAAAAGGACATAAGAACGTAGTGCAGTTTTTGGTGGAGAAAGGTGCGGTCATCGACCATACGGACAAAAACGGACGAACTCCACTGGACCTCGCTGCCTTCTATGGAGATGCCGAGATTGTCCAGTATTTGGTGGAGAGAGGAGCAGTGATAGAGCATGTGGACTACAGTGGGATGAGGCCTCTGGACCGGGCCATAGGCTGTCGGAACACGTCGGTGGTGGTGACTCTGCTGAAGAAAGGGGCCAAGCTGGGCTACAGAACGTCACCTTACGATCGATCAGGGAACGCCGCGTGGGCTATGGCTACTTCCAAGCCAGATATCCTGATCATCCTCCTTCAGAAGCTGATGGAGGAGGGAAACCTACTTTACAAGAAAGGGAAGATGAAGGAGGCAGCCCAGAGGTACCAGTACGCCCTGAGGAAGTTTCCTAGAGAAGGCTTTGGCGATGACCTGAAGGCATTTAAAGACCTGAGGGTCTCTCTGTACCTTAATCTCTCCCGCTGTCGCAGAAAAACCAACGATTTTGGGATGGCTGAGGAGTTTGCAACAAAAGCACTGGAGCTGAAACCCAAATCCTATGAGGCCTTCTATGCCCGTGCAAGAGCTAAAAGAAGCAGCAGGCAGTTTTCGGCAGCCTTGGCGGACCTGCACGAAGCAGCCAAGCTGTGCCCCAATAACCGGGAAATCCGTCGTCTGCTTGCTCGAGTAGAGGACGAGTGTAAACAGATGCAGCGCAGCCAGATCAAAGGTGGCCTCGCTGGGGCTGCAGCTGCTTCCAGCCAGGCGTCAGGAGGCCACGAGTCTGACCAGGAGCAAGACGAAGGACAGGAGGACTCTTCAGAGCACTGTCGTGCCAGGAGGGTGGAAGGACAAAGAGACATCctggaagaggaagaagacgaGGAGGCCTCGCTGCACGACAGGACAACCGATGCCTGCTGGTCACAGCACAGTTATTCCTACAACAGAGTCTTACCCTCTGAGCCCATCAGCAACAGTTTGGGACATCAGAGTCAGAGCCCCAGCTCCCCCCCAGGCCCCGGCAGACTCCCCCTCCACCGTTACCCTCGAGAGCACCGGGAGGAGCTGGCCCAACAGGGCCTGGTCCTGCAGCCCACCAAGCAGGCCCAGATAGTCAAGACCAACCAGCATATGAGCTCCATGGGGGGAGGGTCCAAATCTCAGTACGCTCCCTCCAGTCCCTTACCGAGCAGACACATGTCCAGTATGCTGAAGCCGGGCCCAGGTATCGACATCAGCCCTCTGCCGCCCCCAGCTGATGAGCCTGTATACGGGAACCGCATGTCGCTGGCAGCTGTCTCCACCTCCATGGGTCACAGTTGTGAAAATGAGAGCCTCCATTCCTCCCAGGCTTCCTACTTATCATGCAGCAGCTCCAAGGGTCTGGGGCAAGACAGGTTGTCAGCCCACTCCGCATCCTCCCTGGATGGATTGGCCTGCTCTGGTCCCGGACCCCAGGGAAACCACACTGAGCCAGGAAAGGATGGGATGTGTGGTGCAACAGGATCACAGGGAGGAGGCAGCAGCATGCGCGTGTCCAGTTCTACCAGTAGCCTGGCGTCCAGCAGCAGCCTATCAGACAGCGGCAAGCTGGGACCTGATGTCCGCACCAAGATCTCTGACAAAACAAAGCACAGCCAACAGGCCAGTTCTGCATCAGAGTACAAACCCAGACCCTTCATGGGCATAACTGACAAGACCGCACGCTTTctccaacagcagcagcaaattcaacagcagcagcagccccacGGCTTGCAAAGTCACCCGAGCCTGCAGTCTGCCGGCCGCGGCTGGCTGAACCACTCGTCTGACGGTCTGGTGTGTCACAACACGTCAGCAATGGCCCTGTTGCCTGTCGACTGTGAGCTGCCTTACGCCAAAACAGTGAGCACTTACCAGGAGCAGCACAAACCTCCACCACCTCAGGGTGCTATGGCAATGAGTAGCTTACAAAACGGCATGCACGCCAAGGAATTGACAGAGAAGTTCTGCCAAGCCACCAACTGTTACAAAGAGTCCAAGCCAGCTCTGGCGATGCCACACACGTTCATGGACAGTAAGCCCAAGCAGCCTGGCCTAGCCCGAGATAATCCTGCCATTCACGTAGCTTCAATGAAACCAAAGCGATCATTTATAGAGTCAAATGTGTAGAGAGGTTTGTTTTATCTCTCATAAAGTCCACAATGCACACAAGCAAAAATCTAAAGAGTGAGGAGttgtttcaattttttttaaaccaaacccAATAGTCCCACTTTTAAGCCTGTAAGAAGTACACTTTGCAAGCAGTTTGTTTTCCTGTGTGAATACAGACTGCAGGCAGTGCACCGAATGCTCCAAATTGTTTTCCTCCCAACCTGTCGCTTGTGGCTGTCAGCTTCTGTTACATGACAACATGTCCGCCGTCATTCAGCCAAGCTGGAGACATTGCACTGAAGGAAGTATTTGGACATGTAGTGTACAGTCCTCATCGACACAATGGTGACAGTGAGCACTTTATACACACACTTAGGCCGCTCAAGTTAAACTTAAACAACATATTCAGCTACAGCATAATGTTATTACAGAATAGTTCTGAACGAGTGAAATGGGGTTTGAACTGTGTTCATTACGTCCATGGTGCTGAGACAGGAGAAATAAAGAAGAGAAAGTGCTCAGTGAAGGTGTAAGAAAGTCTAAAAGGACGGGCATTCCTGTGTTTTACAAAGGATGTTATAGATCCTCTGgtgtatattatataaatagTTTTCCCTCTTTTCAGTGAAGATCTATGTTGTAGTGTGTTGACAAGTTCAGACTTGTGTATTTTGAGTTTTATGCACAATGTTTAAATGGTGTTAAAAGTTCTAAAAAAGCATTTGTTAATgtgttatacattatataaatCACCATTAACATTGGATTCCTTTCTGTATCTGCTTGTTGTTGCTGtctagtttaatttatttacagCGCCAATGGCTTGGTTAATTGTAAAagcaatatattttatatagttATTTTTGCACAGCTATTAAGACATTTAAGGATTCTCAATAATGTTGAATTTGCGTATGCTACAATTGCAGTTTATATTACAGAGACAAAtctataaaaacaaatggtttTGGGGCACAGTGCCATCAGCTCTATTTTAATATGTACATTAAATGCAATTGTTGCCATGTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167099 lncRNA upstream 127582 15970982 ~ 15977854 (+) False LOC120570321
TU167069 lncRNA upstream 193008 15912215 ~ 15912428 (+) True G124229
XR_005640866.1 lncRNA upstream 214430 15888137 ~ 15891006 (+) True LOC120569337
XR_005641030.1 lncRNA upstream 365478 15715606 ~ 15739958 (+) True LOC120570206
TU167012 lncRNA upstream 444577 15659407 ~ 15660859 (+) False galnt13
TU167186 lncRNA downstream 73008 16280599 ~ 16280878 (+) True G124323
TU167189 lncRNA downstream 73353 16280944 ~ 16285287 (+) True G124325
XR_005640929.1 lncRNA downstream 97172 16304763 ~ 16310641 (+) True LOC120569637
TU167209 lncRNA downstream 173656 16381247 ~ 16381693 (+) True G124339
TU167248 lncRNA downstream 207018 16414609 ~ 16416452 (+) True G124371
XM_039818861.1 mRNA upstream 3794 16099276 ~ 16101642 (+) True dap1b
XM_039818606.1 mRNA upstream 9099 16013565 ~ 16096337 (+) True LOC120570318
XM_039818611.1 mRNA upstream 124537 15978286 ~ 15980899 (+) True upp2
XM_039818612.1 mRNA upstream 127562 15973261 ~ 15977874 (+) True LOC120570321
XM_039817601.1 mRNA downstream 109783 16317374 ~ 16322778 (+) False tank
XM_039817602.1 mRNA downstream 109972 16317563 ~ 16322778 (+) True tank
XM_039818487.1 mRNA downstream 129618 16337209 ~ 16341623 (+) True tbr1b
XM_039818484.1 mRNA downstream 136444 16344035 ~ 16377228 (+) True slc4a10b
XM_039818485.1 mRNA downstream 136444 16344035 ~ 16377228 (+) False slc4a10b
TU167128 other upstream 3825 16099271 ~ 16101611 (+) False dap1b
XR_005640926.1 other upstream 949550 15138477 ~ 15155886 (+) False trpm2
TU166397 other upstream 1871366 14233332 ~ 14234070 (+) True G123742
TU166312 other upstream 2428090 13635586 ~ 13677346 (+) False cps1
TU166270 other upstream 2751351 13353306 ~ 13354085 (+) True G123633
TU167490 other downstream 790190 16997781 ~ 16999532 (+) False col28a2a
XR_005641003.1 other downstream 920290 17127881 ~ 17177640 (+) False myo3b
XR_005640989.1 other downstream 1652569 17860160 ~ 17880726 (+) False hoxd10a
XR_005640990.1 other downstream 1653162 17860753 ~ 17880726 (+) False hoxd10a
XR_005640988.1 other downstream 1653281 17860872 ~ 17880726 (+) False hoxd10a

Expression Profile