RNA id: XM_039819030.1


Basic Information

Item Value
RNA id XM_039819030.1
length 2796
RNA type mRNA
GC content 0.42
exon number 10
gene id LOC120570610
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19338941 ~ 19349059 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

ACATGTTTTTACCAGCCCTTGGATTACCTGCGCAGGTACTCTCAACTAAATTTTGTCTAAAACCTGTCCCAACTTGTTCGAGGAAAAATAACAAGCCATGAAGGAAGACAGTTAATCTGTTTATCCCTGCTACACCTGCGACGAAGTGAAAGTAAACGGCGTATCTGCTTTCCAAAAATGGCTCGTCGTTATTTCCTGGTCTATTTCATATTTCCGTCATGTCTGGTTGCTGGACAGTCTCCAAAATATGCACTCAAGGGGCAGGAGTTCTTCTTAAAGCCAGATGTCGCTGGACACCCTGATGGAATTCTGTGGAAACATAATGGCAACAAAGTGGTGGAGTTTAATGGCAATGAGCAACATGTGTACACCCCATATGAAAACAGGATCACTCTTGATTGGGTCTCTGCAGAACTCAGTATCACTGAACTCAGATTTGAAGACAGCGGAGACTATGAATTGGAAATAGAAGTAAACAAAGAAGTGTATCGTTCAATTTATAAACTGCAGGTCATAGACAAGGTTGCCAAGCCCACCATATCCTGCAAGATGAGCAATGGCAGCAGCTCTAACAGTTCTGGACAGTTGGTGTGCTCGGCAGAGCCCAGACAACCTCAGTCTTTAATGAAGTTTGAGTGGAGAACACATGGAGGAGTGCAGCCTGGCCCAGAGCTTACAATATCTCTGGGGGAGGAACACGATGATGATGTACATGGTTGCAGTGTGAGCAACCCTCTAAGTAATGAAACAGCTACATTCACTACAAAGGATTGCTACCCAGaCCAAAGTTTATCTGTAGCAGTGATTGCCAGCATCATCGGCATCTTTGGAATTGTGCTAATTGTGCTCGTGGTTTTGGGCATACTGTTCTGCAAAGTACGCCATAAAGCGTGTTTTGCAACAGCTGATTTGGAAAAACAGTCACCACCTTGTAAAACAGACGGTTCAGATAAGAAGAAAGCTCACGGTGATGAAAAACAGCGTCTTCTTGATAGAACACCCACAATTCCCTCTCAGCAGCCACTTCGCAGTTTGGCCCAAGCAGaaccATATATGGATAAACAAGATGGGATGCCACAAGAAGGGATCGTCcaagagagaagaaagatgTTTGAGCAAAACAATGATGGACAGACAGGTTCAAAGAAGAACATAGACCAACATAAGAAAACGGTGTCTCCTCCTTCCCCTCCACGTAGTGAGTTCCCTTCTCCTCTGGATCCGAATAATCTTATTTGCAGCGACAAAGATGATGCAGAGTCAGTCGACTTCGAGCCAGAGAAAGAGGCAGATGAGGATGAGGAAGAACAGTCTGCTCCTGCCAGTGCTGAAACTACTTCTGCCGCTCAGCCACATTCCCCTTCGACCGAAAGCTGTCTAAATATGGCACCGAAGGACGCCGCTGGTGAACACAAAGAAGACGGCAGCTCAGATCAGGTCgctggaggagctgcagatgAAAATGGGGGAGAATCTGACTCATCAGGTGAAGAGGAAAGAAATGAATCAGACGACTGTATCGAGGACAAACAGCTGTCCACCGTTCCTGAACAGAAAGGTTCAGAAACATTATTACATGAGCATGATTCAAACTTATCACAGGATGAAACACAGACAAGAGAAAGCCAGCAAGAAAAAACCAAACCAGTTtctgaagatgaagatgaaagaAATAGTTTAGGTGACCGTGAAGATACAGATATGTGTGACCCGGATCTGTATTTAGCCACCTCCCAGCCACCTCAGAGCCCCACACCAACAAAAGCAGACAACACAACCGATACCTTTCAAAAGTCTCCAGACACTGCACATGCAGACCCAGATCGAGAAGAACAGGACAAGATCAGCCATGACTCAGATGAGGGTCAGTCAGATAAAGGCAAGGGTGAAACTGTTGAAGATAAAAATGAAGTCAAGTGTGACCTAAAAGAAGAAAAGCAGGGCAATGAGAGCCGTAGTCAGGATGAAGAAGGACAAAAGAAAGATGAAGCTGTTGGCCTTTAAAAAGGAAGCAGATAGTGAAAGTGAAGCTGTAAATACAACACAGCACAAAGCAAAGGGAATAAGATCAACAAAGACGTAAAGGTAAAGTTAAATGAGTGGAGGAATTTTAAGACTATCCAAATGCAGACACATAGTTGCTGTGGGATTGTAGTAAAAGTATGGAAAGATGGACATACAGTAGGAAATTAGCAGACAATGACAGTTTTGAGGTTAAAAGCAGATGAGTGGTTCATCTCTCTCTGTTgcctgtttcttttctttttttaaataaaaggccTCATAAAACCAGTAATACCAGTACCTTTCTCTTAAGATTTCCCTGACCCTCTTAATATTATTCATGTAATGTGTTGGATCAACATCTGCATTGTAAATTTCAATTTAATTGTTAGTCTTTTTAAGTGATACAAAAAACGTGTCAACTAATgaaaatacatgcatatatttttttaaatgttatgaaTCAAGCTATTATAAATAAGAAGTTATATGTTAAACTCTTATCAATTTAACAGCACTAATCCTGTAGATGTCATACTGTGATCTTACTCGTAAGAAAGACTTTCTGGTGAAATATAAATATTGTATGCTTAGTTGGACGTCCAGTGACTGTGAAGAGGTTAAAACAACCGATCTTTGCCCTTTTAGGAATCGAAACGCCTTATTGCATGTGTTGTAGGAGAGTAAAATGCTTACAAACATTAAATGATCCCTCTGGATtcataacaaaaaaatgtatgcaaTGCTGTAAGCATAGAACAAAATTAAAGTAACCCACTTTTAAAAATCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU168460 lncRNA downstream 105320 19231992 ~ 19233621 (-) False tbl1x
TU168446 lncRNA downstream 133000 19201746 ~ 19205941 (-) True G125227
XR_005640882.1 lncRNA downstream 225160 19108684 ~ 19113781 (-) False LOC120569517
TU168387 lncRNA downstream 227157 19108300 ~ 19111784 (-) True LOC120569517
TU168374 lncRNA downstream 248162 19089502 ~ 19090779 (-) True G125178
TU168536 lncRNA upstream 83005 19432064 ~ 19432431 (-) True G125293
TU168537 lncRNA upstream 86583 19435642 ~ 19436047 (-) True G125294
TU168538 lncRNA upstream 90367 19439426 ~ 19439851 (-) True G125295
TU168547 lncRNA upstream 105358 19454417 ~ 19459245 (-) True G125299
TU168559 lncRNA upstream 198656 19547715 ~ 19550418 (-) True G125311
XM_039819103.1 mRNA downstream 80095 19231987 ~ 19258846 (-) False tbl1x
XM_039819104.1 mRNA downstream 80095 19231987 ~ 19258846 (-) False tbl1x
XM_039819106.1 mRNA downstream 88707 19231987 ~ 19250234 (-) False tbl1x
XM_039819105.1 mRNA downstream 88707 19231987 ~ 19250234 (-) True tbl1x
XM_039819108.1 mRNA downstream 116996 19214753 ~ 19221945 (-) True LOC120570636
XM_039817069.1 mRNA upstream 704 19349763 ~ 19355290 (-) True klhl6
XM_039817709.1 mRNA upstream 116665 19465724 ~ 19468732 (-) True rpe
XM_039818602.1 mRNA upstream 142452 19491511 ~ 19498560 (-) True ackr3a
XM_039817121.1 mRNA upstream 202267 19551326 ~ 19556641 (-) True casq2
XM_039818776.1 mRNA upstream 208451 19557510 ~ 19559519 (-) True LOC120570428
TU168242 other downstream 634264 18703095 ~ 18704677 (-) False G125090
TU168244 other downstream 634264 18703129 ~ 18704677 (-) False G125090
TU168243 other downstream 634389 18701648 ~ 18704552 (-) True G125090
TU168240 other downstream 639139 18695480 ~ 18699802 (-) True G125089
TU168581 other upstream 246870 19595929 ~ 19597521 (-) True G125326
XR_005640980.1 other upstream 403984 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168717 other upstream 441472 19790531 ~ 19796038 (-) False LOC120570223
TU168785 other upstream 572295 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168944 other upstream 1110103 20459162 ~ 20461629 (-) True G125619

Expression Profile