RNA id: XM_039819081.1


Basic Information

Item Value
RNA id XM_039819081.1
length 4356
RNA type mRNA
GC content 0.49
exon number 18
gene id ppp1r9ala
representative False

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 17432590 ~ 17458368 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

atgaTCAAAGCGGAAAGCAAAGGAGGCGAGAGGACCTTGAGGAGCGCATCCCCTCACAGAAATGCATACAAGTCTGACTTCCACGCCATTAAGTGCTCTTTTGATGGGTCAAAGTCCGACGGCGACTCATATGCAAATGGTTCCAGTGACACCCGGGAGGACTCCAGGGGTAGGCCTTTTGGGACCAGAGTGAACAAGATAAAGAACATATTCCTACAGATGGATGGTCAGCAGCAGGAATGCCAAGAGGGCAAAGTGACTTTAAAGCCTGATGTGTCCCCAGTGTCCCCACCAAAGCTGCAACTTCCAGTCAACACTCACAGAGTTAACCTCAGCACTGCCACAAGCCCAGAATCACTCAATTTAGATAAAACACCCAAGGGGGAAGATGTTGAGATTGACAAAGTGGCTTTGGCAGAGAAGTTTTCTGTGACCAGAAAACTCTTTGAAAGGGGCATCAAAGAGCAGCCTGCAGCTGAAAAACAGTCTCCAAACAGAGTAGTAAATCGTTTGTCCCTTGGAAGTTCCTCTGATGAGGGGAAAAGCTCAAGAAGAGTATCAGGATCCTCTGAGACCACTGTCAAATCAGAGCAAATTCCTACATCAACAGTTAAATGTCAACTGGATGAGAAGGCTGATAGTGAGAAAAAGCATGTGTCTAGAGTGTCATTGAATTCAGGACCCATGTCCAAAAGGTTGGAGAATTACATGGCCGAGAATGACTCGGAAGACAACAACACAGCTGCTGGAATAGGAGGAACTGTGTCTGCTAAACAACGGAGTACCACTGAAACCTTACTGCCTTCCTCCCCAACAAGTGACAACTTACAAACATCTACTTCTCCTGTTAAAGTTGCCACTAACTCTACCACTGTGATTGATGCCactaacaaaaatacattccaGACGGCGTGTGTCATTAATAAACCTACATTGTTGGGGTCGAGTATTAAACCAACATTTCCAGTTACCAATGCAGCATACAAATCTAATTCTCCAACAACTGATGCCACTCACAAACCCCTCTCGCCAGAGCCAACAACCCCGGTTAGCCAAGGCTACAAACACTCCTCATCATCCAGTGATGGATTTAGTAGGACATCTGTTGGTGGGGATGAAGGCAAGCCACATAGTCCGCCCCCAGGGGATGTGAAGCAGCCTCCTCCATCAGCTGGTGGGTTTCAGAACACCAACCGGGATAAATGCCCGGAAAAAGCCAGAAGTAATGACAGCATGGTACATAGACCTACCAGGGACAAACCATCCAGCCAGACCTCCTCACTGGACTCCAGAGGGGTGGGCGTGGTACGGGCAGAACTGGTTGTGGTTCAGAATGAATCCTCAGAGAGTGAGGAGAATGATGATGAGAAAGTTGAAGATAATGTGTTTGAGGAACAGAAGGTGCAAAGCCCCAAAGACGACCTACTAACAGACCTGAAAAGAACCTCTCCACCAGAAAAACACAACTGCAACCCTGCTCATCATGTCTTAGCGAGAGATGCCTCAAAAGAGACCCAAAGGATAGCAgagactgtggaggaaggtagAGTCTTTGAGGACAATGAGCGATTTGGGTtgaaaagggagagacaggACAGTTCAGTTGTGAATCAAGATGGTGATGATAATCGTGAGGAAGATGATGAGGTagcagaggaggagagtgaACTGGAGGTGCAGGTGGGCCATAGCGTCCTGAATAGAGCCTCACCAGTAGTGTACGGTATTGAGAATGCAGCATTTGTGGATGACAGAGATGTAGACCAGATCCtcagggaagaggaggaggaggaggaggaggaggaggaagaagaagaagaggaggaagatcaAATGTATATGGATTATGACGACTGTTATGAGACTACTGGTCTGTCGGATGAGGAGCCTCCCCCAAAGAGGAAAATCAAGTTCTCCACAGACCCCATTCAGGTCTTCAGTACCTTCTCCAACGAGGAATATGATCGCCGCAATGATGATGTGGATCCAGTCGCAGCGTCTGCAGAGTATGAGCTGGAGAAGAGAGTGGAGAAGATGGATGTGTTCCCTGTGGAGATTGAGAAAGGAGACAATGGACTTGGCATCAGTATTATAGGAATGGGAGTGGGAGCTGACCAGGGTCTTGAGAAGCTGGGAATTTTTGTGAAAACCATAACAGAGCGAGGAGCAGCTGAAAACGATGGACGCATACAGGTGAATGACCAGATAGTGGAGGTGGATGGTATCAGTCTGGTGGGTGTCACCCAACTGTTTGCTGCAACAGTCCTGAAAAACACCAAAGGCACAGTGAGCTTCCTGATTGGACGGGAGAAGCCAGGGACGCAAAGTGAGGTAGCCCGCCTCATAAGCGAGACACTAGAGCAGGAGAAGAACCAACAGCAAGAGCAACAACACCTGGATGACCCCTATGAACACTCTACAGAGGAGGAGGAGCGCTATGAGGAGGAGGACGGAGTGGATGAGAGGATCCTATGCTCTAATTTCTCTCCAGGGCAGAACGTAGAGCTGTTTCAGCTGCCTGATTCAGAGGCTTTATTTATGCCGAGCAACATGGACAGCTCTCAGATGGTCTTCAAGTTCAAAGAGTTGCAGCTCAAGCACAGCATTGCTGCAGctgaaataaatcaactaaaGGAAAAGCTAAGGGCTTCTGAGGAGGACAGATCATTGTGGGAAGCCAGGGAGTCTGCACTGGAGCAAAAGATTGAGGATAGCAACGACAAAATCCTGAAGTTGGAGAGTTACTGGCTGGAAGCCCAGGGTCTGTGTAAGACTGTGAATGAACAATTAGCTGAGTCTCAGGCCCAGCATGAGACCCTGGACAAGAAGTATAACAAGGCCAAAAAACTGCTCAAGGACTACCAGCAGAAAGAAATAGACTTTgtgaagaaagaggaggagctGAAAAGAATTCTAGATGAAAAAGACAAGTGTTACAGGGAGCAGCTGGAGAGCTTGCAGGACCGGATAGCTGTCCTGGAGTCCAGAGGGGCCTCAGATGTGGAGCGTCAGAGTGGTCTGGACTCAGCAGCAGATAAGAGATTAATTGGCCAAGATCCAGTCACCAACACACAATCTGTTGACTCGCTACTAGAACAAGGCTGGAGTGAGTTGGTCCCTGAGACTGAGCGCTTGGACACCAGTGCACACAGAGCAAAAGGCCTGCTGGCTCAGAAGGCCAAACGTCAGCCTCCATCTCGGAACAAACTGAAGGAGAGCCTCGCTGTGGCTTCAAGTCACTCGCAGGAaactgaagaagaggaggagcaggaggagcaggAATCTCCCAGGAGGAGGAGGTCGATCCAGGAGAGCCTGTCCCTCCCAGTGCCTGTCTGCTATCCTGGGAATGGACAGAAAGATGTTCCAGGAGAGAATAAAGATGGATCCAGGAGTCAGGCAGAGCTCTCCAGCAGCCCATCTTTGTCACTATCACAGGGAGACAGTGTTGAAAGCAGCGGAAGTCCTTCTTTTTCCCTTCCAAAAGACACCTTGTCGCCACATTCCCCCTCTGGATTCATGCACAATGTCAAGAAGAGGGAATCAAAAGGAAAGAGCAAAGAGGAGCTAAATGAGGCCTCATCAGCAGGAAAACCTAAAAGACGATTTCCAGACTTTGGAGGCCTCCGGAAGTCAGGTGGCAAAGGAAAAAAACACGACAAGGAGGCGATGAGATCTTCTTTGGACAGCAGGGGATCAGCAGAGTTACTGGAGGAGTCTGGAGGGAACCTGTCTCCTGCAGATTCAATGACTTCCATCCCCACCTGTATGCCCTTCTCCTGGTTTGGAGACAAAgacagggacagagacagagagcccTCCTCTTCCAGCAGCAGTCTGCCATACGCTGCAACGGAGACCAGCAGTGAGCAAAGCCAGGACCGCAAGAATAAGAGTTTTTCAGTCATAGATGATTCTAGCCCTGCCAGTCCCAGTTCAGACATCTCTGGGTTAGTTGCTGAACCCAATCTGTCTGGGCGCTCACACACTTTAATCTTCTCTTCCAGCGAGACTTTGGATGATGAACCAGCTGCAGGAAAAGAGTATCATTGGCAGAACCGGCCTGTCTCTGAATGGACCAATCAACAAGTCTGTCACTGGTTGATGGGCATGAATATGGACCAATACACACCTGAATTCACAGCTAAGGGAGTGGACGGCCCGCAGCTCTTGTACTTGGACAGTGACAAgttgaagGCACTCGGTGTGTCAAGTCAGAGCGACCGTTCAACTATCAAGAAAAAGCTGAAGGAAATGCGTAAGGcccaggagaagctggagaaacagagagagaaaagagagaaggaggtccGACGCAGCGGGAGACTTCCAGTCAGTACTGACTCTGTCTGCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU167694 lncRNA downstream 82913 17347911 ~ 17350746 (-) True G124691
TU167666 lncRNA downstream 95399 17248369 ~ 17338260 (-) True G124673
TU167700 lncRNA downstream 139019 17291927 ~ 17294640 (-) True G124695
TU167696 lncRNA downstream 143221 17287949 ~ 17290438 (-) True G124693
TU167672 lncRNA downstream 203543 17227899 ~ 17230116 (-) True G124679
XR_005640878.1 lncRNA upstream 279814 17737284 ~ 17822487 (-) False LOC120569506
XR_005640876.1 lncRNA upstream 279814 17737284 ~ 17822487 (-) False LOC120569506
XR_005640877.1 lncRNA upstream 279814 17737284 ~ 17822487 (-) True LOC120569506
TU167930 lncRNA upstream 564939 18022409 ~ 18023477 (-) True G124872
TU168090 lncRNA upstream 634857 18092327 ~ 18092530 (-) True G125000
XM_039819086.1 mRNA downstream 9330 17421867 ~ 17424329 (-) True nup62l
XM_039818549.1 mRNA downstream 46660 17384763 ~ 17386999 (-) True dlx2a
XM_039817855.1 mRNA downstream 109071 17304771 ~ 17324588 (-) True slc25a12
XM_039818212.1 mRNA downstream 155776 17271740 ~ 17277883 (-) True mettl8
XM_039818005.1 mRNA downstream 162617 17250382 ~ 17271042 (-) True tlk1a
XM_039818790.1 mRNA upstream 109947 17567417 ~ 17575561 (-) True sp3a
XM_039817412.1 mRNA upstream 124000 17581470 ~ 17629519 (-) True LOC120569548
XM_039817413.1 mRNA upstream 124000 17581470 ~ 17604682 (-) False LOC120569548
XM_039817421.1 mRNA upstream 179329 17636799 ~ 17642646 (-) True cir1
XM_039817414.1 mRNA upstream 190673 17648143 ~ 17658404 (-) True gpr155a
TU167228 other downstream 1052894 16378609 ~ 16380765 (-) False gcgb
TU167157 other downstream 1332066 16099278 ~ 16101593 (-) True G124303
unassigned_transcript_607 other downstream 2016387 15417200 ~ 15417272 (-) True trnak-uuu_17
TU166697 other downstream 2439870 14984485 ~ 14993789 (-) True G123960
TU166600 other downstream 2643753 14784561 ~ 14789906 (-) False G123886
TU168094 other upstream 655640 18113110 ~ 18115089 (-) True LOC120569287
TU168092 other upstream 656040 18113510 ~ 18115089 (-) False LOC120569287
TU168093 other upstream 656102 18113572 ~ 18115089 (-) False LOC120569287
XR_005640956.1 other upstream 699262 18156732 ~ 18163749 (-) False prkra
TU168240 other upstream 1238010 18695480 ~ 18699802 (-) True G125089

Expression Profile