RNA id: XM_039819101.1


Basic Information

Item Value
RNA id XM_039819101.1
length 3871
RNA type mRNA
GC content 0.46
exon number 8
gene id fancb
representative True

Chromosome Information

Item Value
chromosome id NC_053123.1
NCBI id CM020920.1
chromosome length 39440604
location 19189183 ~ 19195845 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tgcacttgGAGTGACAGGAAGCGTTCAATTTCAGTTGGCGCGCCGCTTCGAGCAGTCGCTAAGTTGGTTGAATACATAGATATGGGTTGAATACTGCTACATTTCTCTCTCACAAGTAAACTTAGCAACTAACGTTAGTCGTTCATATGTACACCTTGGTGAGACTTCTGTCGTGAAAGTGACAGCTCCAAATTTAGCAATAACGTTGACTCAAGCTGTTATAAGGAGGGATCGAACCTGGTAGGCACCCGAAGCTTCACTTTTGCATAATGGAGAAATTTAATCGGCTTTCGTTATGTGGAAAGATAATCATATTTAACTTTAAACGAGCTTCAGCCACAAATGACTGCGATCGAAGCGAGTTAATATTCTCCAGCCTCGCATTtgaacaggaagacaacacgtTCCTGAAGGCAGCTGATGGAGCAGCTATCATCAGCAGGAAAAGATCCGCGCATGTGGATattgtgaaatgtaaatgtgccaTAAATGTTCAGAAGAGAGTCACCACAGCGTGTATTTTAGTGACAAAGAAGAGTGAGAAAGGGGAAAGCTTCCAGTATAGTCTACTCACACTGAGCAGCTCGAACCGCCTGGAGCCCTGCATTGAGTTTAAACTCCCTTATCAAATGAGGGAGACTGTGTATATTCTCCATGGCCCCACAGTATTGTGGAGCCATACTGGTAATGTATTCTATGCATCTCTGCAGGCAGGAGAGGTGAGACAGATACCCATTCAGGTGTCCCACAGTGTTATTGGAGAACTTCCCCTCCACAAAGAACATGTATTTGTCCTTGGGCTGCACAACCTTTCAGATCAGTGCACTCCGTCCACAAGCCAAACCTTGGGCTATTTTGTTGAGAGTGGACAGGTGTTTGACGGCACTATGATTTTGCCTCATCCCTACATTTGCATCACACGGTGCATCTTGGTGCTGTCAGCTGAAAAAGTGGATGACGTGCTGAAATCTGCTGTGATTGCAGCAACTTCGAATCAGCAACTCGTTTATTTTGAGAATGGCATCGTGAAAGACGTATGTCAGCTCCCCTTTGAACAACCTGAAAATATTCAGGTTGTCAACACAGGTAGAAATGGCTGCTTGTTTGTCATATCTTTTCACGAGGGCCATGTATGTGCTGTGTGGAAGGAGACATTTCAGATAGCCTCCCACTGGTCAAGTGTCAGTTCTGTCCATGTGGATGACTTCCTGGGATGTGGAACAGACCAAatgctgttgttttttaagGATCAAGGCATAACAGGACAGCCTTTGGATACATTTCTCCTCACTGATCTCTGTGGTATTTCATATTCTCATGGTCAGGACAGTGCAGCCCCAAAGACACCGCCTCCCTCACCAGAGAACGATCTCCTCACTCTTCGAGCTTTAGAGTCCAGACTACAGAGTGGATTGACCGTGCTTCAAGAGCTTCAAAGAGAGGTGAGAGTGAAGGACAGAGTTCTACAGCAGTCGGTCCGAGCTCTTACCGATGTGGTCTCAGAAAGTGAAACTATTCTCACCCAGCATGAGCAGGAAGGCCTTATTGCTCTGTGGGACTGTGATGATGAGTCAAGGGACGAGGCCTTGGATGACAAGACACAAGACATGCCAGCAGTGTCTTCAAAACCTCAAATTGACAAGCTGTGGCATCGCATCACTGAGGAGCGACTGGTTGTGGGAGTGATACTAACTACTGACAGCTCAGTACCAGTGGCCAGTGTGAGCTTATCCATCCTGACAGAGACGGGTCAGAGCTCAACGCCTGCAGTCATCCAGACCCAGAGCCAAGTGTTCTGGCTCCCTGCGCCCtgctcctcatcatcatcatcctcctcctctgcataCATGTTCTCAGAGCCCGCAGCCAAGAGAAGCAAGCAGCACAATGCCGGCAGACCCAATGATCTCAACACATGCAGACTGGCTGTGACTGCTGTGACCAGGCTGACGCCTCTGTTGAACTCTGGCTGTGTCAAGTGCCATGTCATGCTCCATTACGTCCAGAGACAAGATGCTTTTGCCCTTGTGAGCAACCCAACACCGGTTGTTCTGCATTGTGGTCAATTTGCTTTAGACGTCCACAGTGATTTCCAAACCCGACTGTTGAAAAACCCAGATCTCAAAACAGATGAGGTTAAAGAGGACTTGCTGAGTCTGATGGCGGTGCTGGATCGCTGGGTCTTCCACATAGACTCTCCTGAGCACAGCTTAGGTGATATAGATAGCTGGATTCAGAAAAGAGTGGGTTGTAAGAGGATAGAAGTGAGCCCTCAGTATCTGCTGTTGAATTCTTCAGGACCATCTGCTCTCATGCTGCTGCACTGGCATCAGATAACCCCTTTCCAGGGTGAACTGTCTGTCCACTCCagCCAGTTACAGGCGCTCCAGTTTCTGGACTCTCTCTTGGCTTACCTCCCTGCGTCCTGTTCCATCCAGCCTGTCAAAGGTACAAAAGGACAGGGTGCAACTCAAATATTTTCTTTGGCACTGGAGAAAGAGATGGTGTCACTCATAGAGTGTGTGTCATCGCTACTTtgtgaagaagaagaggaggaggaggagaggaagagcctTGGACATGAGGAGACCCCCGAGCCAGGTTCTGTGAAGGGGCTCCAGAGGTGTAGGGAGGTCTTTCAGTGGGACGTGGAGAGGAGTAGGATGAGGTTGAGCCCCCTGGTGGATGTAGGGAGGTATCGTAGGCTAACCCAAAGCATGTCCAAAGCCCAGCTCGATGGGGATTTGGCAGCTCTCTTAGGCACTCGGAGAACTTTTCTCTGCTAATATGCTGTAGATGtggttgttgtaaaaaaaacaatccctTTGCAAAGTCTGGACACGCAGTTAGTATTAATGACGGTAAAGCCAACTCTTTTGTAGTGCATTGTGTCAAGTGTAATGACCAAAGACAGTACATCATGTATGTTCTTCACATTTCAACTGTACTGAGAGCCGCCCCCGTTGCTGGTTTGGTTATGTCTCTGCTGTAAAATGTCTGCTTTCTTAGTCTCTTGGGGTTTCTACCTATCTAGTGTCTGCTGCTGAGTCAGCCGATCACCTCCTGGTTTGCACAGCCTTAATCTGATACTGATGTTATACTGCTCTCTGCTCAGCTTATTCTTTTGTTCATGTCCCTGGACCCTCTGTATTCACAAATGCTCTTTaatgtctgttgttgttgttgttgctgctgctgttgctgctgtgtgCTATTCAGTAGGAGATAGACCACTTTCATCCTGGAGTGGGAAACTGTTTGTGTTATAAATAAAGGCAACAGATGATGGTTAGAGCAAGGGGGTTGTACATCTGCTCAGTGGCTGGGTTCGACTGAAAGCTTTTAGTGGTACTTTTCCACTTATGGTTCAGTTGTTTTCCTGTGAAAcgatgtaaataaaaaaaaaaattgtccttGGATTCTGTTTCTTCTGTGCTGCTGCACAGGCTGTCAGCACTGTTAGTTAAAATGCAGTTCACCCAAGTAAACATCAAATCCTAAAAGGATCTGGATACACGAGGTCTGTGGCAGCTTGACCATAGTGTTTGCTAAAATCGCTGGTGaggtttttcatattttttttttttcttctcccagTGGGGGCGGAAAAAAACGAGGATGTGCATTTTGTTTAGCTGAGctagtctgtctctgtgtagtACTCAGTCTGAGGGGAGATGAACTTCCCCTCTTTTACACCTTTTAATATGTCTTCTTCATTGCAAGTAACCTCTTCCACTGGACCCATTGCCACAGGACTCCACTGAACTTAGCTGAAACATAATTACTTCAAAGAGAGTGATATTTTTAATTGATTACTTTTGATGGTAATGCTACTGTGGGTTACATTAAATGTTccagttaaaaaata

Function

GO: NA

KEGG:

id description
K10889 FANCB; fanconi anemia group B protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_005640882.1 lncRNA downstream 75402 19108684 ~ 19113781 (-) False LOC120569517
TU168387 lncRNA downstream 77399 19108300 ~ 19111784 (-) True LOC120569517
TU168374 lncRNA downstream 98404 19089502 ~ 19090779 (-) True G125178
TU168365 lncRNA downstream 112417 19073235 ~ 19076766 (-) True G125173
TU168281 lncRNA downstream 341814 18845832 ~ 18847369 (-) True G125116
TU168446 lncRNA upstream 5901 19201746 ~ 19205941 (-) True G125227
TU168460 lncRNA upstream 36147 19231992 ~ 19233621 (-) False tbl1x
TU168536 lncRNA upstream 236219 19432064 ~ 19432431 (-) True G125293
TU168537 lncRNA upstream 239797 19435642 ~ 19436047 (-) True G125294
TU168538 lncRNA upstream 243581 19439426 ~ 19439851 (-) True G125295
XM_039817373.1 mRNA downstream 31118 19128224 ~ 19158065 (-) True gpm6bb
XM_039817372.1 mRNA downstream 46347 19128224 ~ 19142836 (-) False gpm6bb
XM_039817374.1 mRNA downstream 46351 19130925 ~ 19142832 (-) False gpm6bb
XM_039817378.1 mRNA downstream 70596 19116575 ~ 19118587 (-) True trappc2
XM_039818893.1 mRNA downstream 155994 19010827 ~ 19033189 (-) True LOC120570505
XM_039819108.1 mRNA upstream 18908 19214753 ~ 19221945 (-) True LOC120570636
XM_039819103.1 mRNA upstream 36142 19231987 ~ 19258846 (-) False tbl1x
XM_039819104.1 mRNA upstream 36142 19231987 ~ 19258846 (-) False tbl1x
XM_039819106.1 mRNA upstream 36142 19231987 ~ 19250234 (-) False tbl1x
XM_039819105.1 mRNA upstream 36142 19231987 ~ 19250234 (-) True tbl1x
TU168242 other downstream 484506 18703095 ~ 18704677 (-) False G125090
TU168244 other downstream 484506 18703129 ~ 18704677 (-) False G125090
TU168243 other downstream 484631 18701648 ~ 18704552 (-) True G125090
TU168240 other downstream 489381 18695480 ~ 18699802 (-) True G125089
TU168581 other upstream 400084 19595929 ~ 19597521 (-) True G125326
XR_005640980.1 other upstream 557198 19753043 ~ 19768586 (-) False si:ch211-214p13.3
TU168717 other upstream 594686 19790531 ~ 19796038 (-) False LOC120570223
TU168785 other upstream 725509 19921354 ~ 19923694 (-) False si:ch211-214p13.7
TU168944 other upstream 1263317 20459162 ~ 20461629 (-) True G125619

Expression Profile